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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: benchmarks/coherence_projector_sense_index.py

coherence_projector_sense_index.py

Source Code

python
r"""Camino 18 - Coherence projector + Sense Index residue analysis.

Studies TNFR *coherence* head-on as a mathematical object and locates
the TNFR **Sense Index** (Si) relative to the "closed room" -- the
residue of coherence.

Motivation
----------
The whole Camino series narrowed the open obstruction of the
TNFR-Riemann program (G4 = RH) to a single structural location: the
residue S(T) = (1/pi) arg zeta(1/2 + iT) lives in the part of state
space that the canonical 13-operator machinery cannot generate.  N15
(theory/REMESH_INFINITY_DERIVATION.md, Branch A) proved that the
asymptotic recursivity operator R_infinity (REMESH-infinity) is a
bounded self-adjoint ORTHOGONAL PROJECTION.  An orthogonal projection
splits the state space exactly in two:

    L^2  =  range(R_infinity)  (+)  ker(R_infinity)
            \_______________/        \____________/
             coherent / resonant      the closed room
             subspace                 = residue of coherence

So "the closed room is the residue of coherence" is literally true:
it is ker(R_infinity) = range(I - R_infinity), the orthogonal
complement of the coherent subspace.  This harness studies that
statement directly (T1, T2) and then asks where TNFR's own
coherence-capacity metric, the Sense Index Si, sits with respect to
the room (T3, T4).

The closed room has two floors
------------------------------
Inside the kernel, the canonical graph symmetry S_n (prime
relabelling) splits it again:

    ker(R_infinity) = (ker cap Fix(S_n))  (+)  (ker cap Fix(S_n)^perp)
                       \_______________/        \__________________/
                        floor 1: reachable        floor 2: the wall
                        (symmetric residue)        (antisymmetric;
                                                     where S(T) lives)

Camino 17 showed the canonical propagator oscillation lands in
floor 1.  This harness shows the Sense Index Si is *also* an
S_n-symmetric functional (T4): like C(t) and the weighted spectral
trace, Si lives in Fix(S_n) and is therefore blind to floor 2.

Tests (all PASS by *characterising the room*, not by entering floor 2):
  T1  Coherence is an exact orthogonal projection; the closed room is
      its orthogonal complement (P^2=P, P=P^H, Parseval, rank=L).
  T2  The closed room is vast: dim(range)=L (constant), dim(ker)=N-L
      grows without bound; coherent fraction L/N -> 0.
  T3  The Sense Index is a coherence-capacity functional: Si falls
      monotonically as phase dispersion (residue character) rises.
  T4  The Sense Index is S_n-degenerate: sorted Si on the complete
      prime graph is invariant under prime relabelling -> Si in
      Fix(S_n), blind to the closed room's antisymmetric floor.

HONEST SCOPE (non-negotiable)
-----------------------------
This harness closes NOTHING.  G4 = RH stays OPEN.  R+ and
pi remain the assumed substrate.  Characterising the
closed room and showing Si is symmetric LOCATES the obstruction; it
gives no route into floor 2.  The kernel is infinite-dimensional and
its antisymmetric floor is non-empty -- membership facts, not a proof
strategy.  The result strengthens branch-B2 evidence (a genuinely new
canonical operator would be needed to reach floor 2).  It does NOT
prove B2, B3, or RH.
"""

from __future__ import annotations

import logging
import math
import os
import sys

import numpy as np

# --- dual sys.path: benchmarks dir + ../src ------------------------------
_HERE = os.path.dirname(os.path.abspath(__file__))
_SRC = os.path.normpath(os.path.join(_HERE, "..", "src"))
for _p in (_HERE, _SRC):
    if _p not in sys.path:
        sys.path.insert(0, _p)

# quieten the optional-orjson telemetry warning from tnfr.utils.io
logging.getLogger("tnfr").setLevel(logging.ERROR)

# --- guarded canonical imports -------------------------------------------
try:
    import networkx as nx

    from tnfr.metrics.sense_index import compute_Si
    from tnfr.riemann.remesh_infinity_residue_split import build_resonant_bin_mask
    from tnfr.riemann.von_mangoldt import build_prime_ladder_spectrum

    _HAVE_TNFR = True
except Exception as exc:  # pragma: no cover - import guard
    _HAVE_TNFR = False
    _IMPORT_ERROR = exc


# --- canonical constants -------------------------------------------------
TAU_L = 4  # local REMESH period
TAU_G = 8  # global REMESH period; L = lcm(4, 8) = 8
N_MATRIX = 64  # window for the explicit projector matrix
DIM_SWEEP = (64, 128, 256, 512, 1024, 2048)
N_PRIMES = 50  # primes on the complete graph (T4)
SEED = 12345  # prime-relabelling seed (T4)
# Canonical engine SI weights (config/defaults_core.py SI_WEIGHTS) — the
# π-derived coherence-band hierarchy: alpha = π/(π+1), beta = π/(π+1)²,
# gamma = 1/(π+1)² (sums to 1 exactly).  Uniform across nodes, so the T3/T4
# dispersion and S_n-invariance arguments are weight-agnostic.
SI_WEIGHTS = {"alpha": 0.7585, "beta": 0.1832, "gamma": 0.0583}
DISP_SWEEP = (0.0, 0.25, 0.5, 0.75, 1.0)  # phase-dispersion factors


# --- canonical helpers ---------------------------------------------------
def _remesh_infinity_matrix(
    n: int, tau_l: int = TAU_L, tau_g: int = TAU_G
) -> np.ndarray:
    """Explicit R_infinity projector matrix P = ifft . mask . fft.

    Uses the canonical resonant-bin mask from the engine, so P is the
    matrix form of ``split_residue_by_remesh_infinity`` (range part).
    """
    mask = build_resonant_bin_mask(n, tau_l=tau_l, tau_g=tau_g)
    fwd = np.fft.fft(np.eye(n), axis=0)
    inv = np.fft.ifft(np.eye(n), axis=0)
    diag = np.diag(mask.astype(complex))
    return inv @ diag @ fwd


def _ring_phase_dispersion_si(n: int, spread: float) -> float:
    """Mean Si on a ring with alternating phases 0 / (spread*pi).

    nu_f and delta_nfr are uniform, so only the phase-coherence term
    of Si moves: this isolates Si's response to dispersion.  spread=0
    is full synchrony (coherent); spread=1 is maximal anti-alignment
    (residue character).
    """
    G = nx.cycle_graph(n)
    G.graph["SI_WEIGHTS"] = dict(SI_WEIGHTS)
    for i, node in enumerate(G.nodes()):
        theta = (i % 2) * spread * math.pi
        G.nodes[node].update({"nu_f": 1.0, "delta_nfr": 0.1, "phase": float(theta)})
    si = compute_Si(G, inplace=False)
    return float(np.mean(list(si.values())))


def _complete_prime_graph_si(order: np.ndarray) -> np.ndarray:
    """Sorted Si vector on K_n with prime-derived node attributes.

    ``order`` permutes which prime's attributes land on which node.
    On the complete graph K_n (invariant under all of S_n) any prime
    relabelling permutes nodes, so the *sorted* Si vector is an
    S_n-invariant of the construction.
    """
    spec = build_prime_ladder_spectrum(N_PRIMES, max_power=1)
    primes = np.asarray(spec.primes, dtype=float)
    logp = np.log(primes)
    nuf = logp / logp.max()  # normalised structural freq
    phase = primes % (2.0 * math.pi)  # bounded, prime-specific
    dnfr = 1.0 / primes  # bounded, prime-specific
    G = nx.complete_graph(N_PRIMES)
    G.graph["SI_WEIGHTS"] = dict(SI_WEIGHTS)
    for i, node in enumerate(G.nodes()):
        j = int(order[i])
        G.nodes[node].update(
            {
                "nu_f": float(nuf[j]),
                "delta_nfr": float(dnfr[j]),
                "phase": float(phase[j]),
            }
        )
    si = compute_Si(G, inplace=False)
    return np.array(sorted(si.values()))


# --- tests ---------------------------------------------------------------
def test_t1_coherence_is_orthogonal_projection() -> bool:
    """T1: R_infinity is an exact orthogonal projection; the closed
    room is its orthogonal complement."""
    n = N_MATRIX
    p = _remesh_infinity_matrix(n)
    idem = float(np.max(np.abs(p @ p - p)))
    selfadj = float(np.max(np.abs(p - p.conj().T)))
    rank = int(round(float(np.real(np.trace(p)))))
    lcm = math.lcm(TAU_L, TAU_G)
    # Parseval / orthogonality on a deterministic signal
    rng = np.random.default_rng(0)
    f = rng.standard_normal(n)
    pf = np.real(p @ f)  # coherent part (range)
    qf = f - pf  # closed-room part (kernel)
    parseval = abs((np.dot(pf, pf) + np.dot(qf, qf)) - np.dot(f, f))
    ortho = abs(float(np.dot(pf, qf)))
    ok = (
        idem < 1e-10
        and selfadj < 1e-10
        and rank == lcm
        and parseval < 1e-9
        and ortho < 1e-9
    )
    print("  [T1] coherence R_infinity as orthogonal projection")
    print(f"       ||P^2 - P||  (idempotent)  : {idem:.2e}")
    print(f"       ||P - P^H||  (self-adjoint): {selfadj:.2e}")
    print(f"       rank = trace(P)            : {rank} (expect L={lcm})")
    print(f"       |Parseval residual|        : {parseval:.2e}")
    print(f"       |<coherent, closed-room>|  : {ortho:.2e}")
    print("       (P^2=P and P=P^H => exact orthogonal projection;")
    print("        the closed room ker(P)=range(I-P) is its complement)")
    print(f"       -> {'PASS' if ok else 'FAIL'}")
    return ok


def test_t2_closed_room_is_vast() -> bool:
    """T2: dim(range)=L is constant; the closed room dim(ker)=N-L
    grows without bound -> coherent fraction L/N -> 0."""
    lcm = math.lcm(TAU_L, TAU_G)
    rows = []
    ok = True
    prev_frac = 2.0
    for n in DIM_SWEEP:
        mask = build_resonant_bin_mask(n, tau_l=TAU_L, tau_g=TAU_G)
        dim_range = int(mask.sum())
        dim_ker = n - dim_range
        frac = dim_range / n
        rows.append((n, dim_range, dim_ker, frac))
        ok = ok and (dim_range == lcm) and (frac < prev_frac)
        prev_frac = frac
    print("  [T2] the closed room (kernel) is vast")
    print("       N      dim(range)  dim(ker)   coherent frac L/N")
    for n, dr, dk, fr in rows:
        print(f"       {n:<6} {dr:<11} {dk:<10} {fr:.6f}")
    print(
        f"       dim(range) constant = L = {lcm}: " f"{all(r[1] == lcm for r in rows)}"
    )
    print("       coherent fraction -> 0: the coherent/resonant")
    print("       subspace is finite; the closed room fills the rest")
    print(f"       -> {'PASS' if ok else 'FAIL'}")
    return ok


def test_t3_sense_index_is_coherence_functional() -> bool:
    """T3: Si falls monotonically as phase dispersion rises ->
    Si measures coherence capacity."""
    n = 60
    si_vals = [_ring_phase_dispersion_si(n, s) for s in DISP_SWEEP]
    # monotone non-increasing (tiny tolerance for round-off)
    monotone = all(si_vals[i + 1] <= si_vals[i] + 1e-9 for i in range(len(si_vals) - 1))
    margin = si_vals[0] - si_vals[-1]
    ok = monotone and (margin > 0.2)
    print("  [T3] Sense Index as a coherence-capacity functional")
    print("       phase-dispersion factor s -> mean Si (ring, N=60)")
    for s, v in zip(DISP_SWEEP, si_vals):
        print(f"       s={s:.2f}  (disp~{s:.2f})  mean Si = {v:.6f}")
    print(f"       monotone non-increasing : {monotone}")
    print(f"       Si(coherent) - Si(residue) = {margin:.4f} (> 0.2)")
    print("       (Si peaks at full synchrony s=0 and decays toward")
    print("        the dispersed/residue regime -> Si tracks coherence)")
    print(f"       -> {'PASS' if ok else 'FAIL'}")
    return ok


def test_t4_sense_index_is_sn_degenerate() -> bool:
    """T4: sorted Si on K_n is invariant under prime relabelling ->
    Si in Fix(S_n), blind to the closed room's antisymmetric floor."""
    base = np.arange(N_PRIMES)
    shuf = base.copy()
    np.random.default_rng(SEED).shuffle(shuf)
    si_a = _complete_prime_graph_si(base)
    si_b = _complete_prime_graph_si(shuf)
    max_diff = float(np.max(np.abs(si_a - si_b)))
    spread = float(si_a.max() - si_a.min())
    ok = (max_diff < 1e-9) and (spread > 0.1)
    print("  [T4] S_n-degeneracy of the Sense Index on K_n")
    print(
        f"       sorted Si range : [{si_a.min():.4f}, "
        f"{si_a.max():.4f}] (non-trivial: {spread > 0.1})"
    )
    print(f"       max|sorted Si_canonical - Si_shuffled| : {max_diff:.2e}")
    print("       (machine-precision zero == Si is a symmetric")
    print("        functional of the prime attributes: Si in Fix(S_n),")
    print("        like C(t) and the weighted spectral trace; it cannot")
    print("        see ker(R_infinity) cap Fix(S_n)^perp where S(T) lives)")
    print(f"       -> {'PASS' if ok else 'FAIL'}")
    return ok


def main() -> int:
    print("=" * 70)
    print("Camino 18 - Coherence projector + Sense Index residue")
    print("Studying coherence head-on; locating Si vs the closed room")
    print("=" * 70)
    if not _HAVE_TNFR:
        print(f"SKIP: TNFR canonical imports unavailable: {_IMPORT_ERROR}")
        return 0
    print(
        f"L = lcm(tau_l={TAU_L}, tau_g={TAU_G}) = "
        f"{math.lcm(TAU_L, TAU_G)}; "
        f"N_MATRIX={N_MATRIX}, N_PRIMES={N_PRIMES}"
    )
    print("-" * 70)

    results = [
        test_t1_coherence_is_orthogonal_projection(),
        test_t2_closed_room_is_vast(),
        test_t3_sense_index_is_coherence_functional(),
        test_t4_sense_index_is_sn_degenerate(),
    ]
    n_pass = sum(1 for r in results if r)
    n_total = len(results)

    print("-" * 70)
    print(f"SUMMARY: {n_pass}/{n_total} tests PASS")
    print("")
    print("Interpretation (honest scope):")
    print("  * Coherence R_infinity is, exactly, an orthogonal")
    print("    projection (T1).  The 'closed room' is literally the")
    print("    residue of coherence: ker(R_infinity) = range(I - P).")
    print("  * The closed room is vast (T2): the coherent/resonant")
    print("    subspace is finite-dimensional (L modes) while the")
    print("    residue grows without bound -- coherent fraction -> 0.")
    print("  * The Sense Index Si is TNFR's node-level coherence-")
    print("    capacity metric (T3) and an S_n-symmetric functional")
    print("    (T4): like C(t) and the spectral trace it lives in")
    print("    Fix(S_n), so it is blind to the room's antisymmetric")
    print("    floor ker(R_infinity) cap Fix(S_n)^perp where S(T) sits.")
    print("")
    print("THESIS VERDICT: OPEN, by design. This closes nothing.")
    print("  G4 = RH OPEN. R+ and pi remain assumed.")
    print("  Characterising the closed room and showing Si is symmetric")
    print("  LOCATES the obstruction (branch-B2 evidence); it gives no")
    print("  route into floor 2. It does NOT prove B2/B3/RH.")
    print("=" * 70)
    return 0 if n_pass == n_total else 1


if __name__ == "__main__":
    raise SystemExit(main())