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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: benchmarks/emergent_shell_cardinals.py

emergent_shell_cardinals.py

Emergent Shell Cardinals: magic numbers as dynamical-symmetry irrep cardinals (the DEEP layer), not spatial-ball modes (the superficial one).

DIAGNOSIS (benchmarks/emergent_shell_ordering.py was too superficial): we mapped "atom" -> a ball of points in R^3 + k-NN -> a spatial Laplacian, and got the spherical well 2, 8, 18, 20. That IMPORTS R^3 and the rotation group SO(3) (we built the symmetry in geometrically) and -- worse -- the spatial radial split BREAKS the larger dynamical degeneracies.

THE TNFR-NATIVE LAYER (emergent_integers_symmetry): an integer emerges as the DIMENSION of an irreducible representation of the symmetry group of the structural dynamics. So a shell and its magic number are NOT spatial counts; they are CARDINALS of a symmetry. The periodic table's numbers are, in standard physics, the cumulative cardinals of a chain of DYNAMICAL symmetry groups:

text
SO(3)   geometric rotations     -> irrep dims 2l+1
SO(4)   Coulomb (Runge-Lenz)    -> level degeneracy n^2 (hydrogen)
U(3)    3D isotropic oscillator -> level deg (N+1)(N+2)/2
SO(4,2) the "Madelung group"    -> the (n+l) period structure

THE CONCRETE RESULT (measured below): the atomic "10" (Ne closure) that the spatial ball and the Phi_s self-consistency could NEVER produce is exactly the SO(4) cardinal -- the n=2 Coulomb shell (2s + 2p DEGENERATE = 8, so the cumulative is 2 + 8 = 10). The spatial ball broke SO(4) -> SO(3) (it split 2s from 2p), giving 2, 8 instead of 2, 10. So the "10" is a SYMMETRY cardinal, not a two-body force.

HONEST SCOPE: the representation theory of SO(3)/SO(4)/U(3)/SO(4,2) is STANDARD external mathematics -- the comparison framework, exactly as emergent_integers_symmetry cites L-commutes-with-Aut(G). The TNFR contribution is (i) the reading "magic number = emergent cardinal (irrep dim)", at the same ontological level as the number-theory program, and (ii) the diagnosis that the spatial-ball mapping sat at the BOTTOM of the symmetry chain and broke the dynamical degeneracies. The genuinely emergent home of these cardinals is the integrable-OSCILLATOR substrate (symplectic_substrate.py: H_sub is a sum of decoupled oscillators with a U(2) dynamical symmetry, action-angle / Bohr-Sommerfeld). Deriving WHICH dynamical group the full nonlinear operator dynamics realises (and whether it reaches SO(4,2) / Madelung) is the open deep program; this benchmark does NOT claim it.

Run: python benchmarks/emergent_shell_cardinals.py

Theoretical anchor: AGENTS.md (emergent geometry; discrete-mode regime); benchmarks/emergent_integers_symmetry.py (cardinals = irrep dims); benchmarks/emergent_shell_ordering.py (the spatial-ball mapping it deepens). Status: RESEARCH (falsifier / reframing).

Source Code

python
"""
Emergent Shell Cardinals: magic numbers as dynamical-symmetry irrep cardinals
(the DEEP layer), not spatial-ball modes (the superficial one).
=============================================================================

DIAGNOSIS (benchmarks/emergent_shell_ordering.py was too superficial): we
mapped "atom" -> a ball of points in R^3 + k-NN -> a spatial Laplacian, and got
the spherical well 2, 8, 18, 20. That IMPORTS R^3 and the rotation group SO(3)
(we built the symmetry in geometrically) and -- worse -- the spatial radial
split BREAKS the larger dynamical degeneracies.

THE TNFR-NATIVE LAYER (emergent_integers_symmetry): an integer emerges as the
DIMENSION of an irreducible representation of the symmetry group of the
structural dynamics. So a shell and its magic number are NOT spatial counts;
they are CARDINALS of a symmetry. The periodic table's numbers are, in standard
physics, the cumulative cardinals of a chain of DYNAMICAL symmetry groups:

    SO(3)   geometric rotations     -> irrep dims 2l+1
    SO(4)   Coulomb (Runge-Lenz)    -> level degeneracy n^2 (hydrogen)
    U(3)    3D isotropic oscillator -> level deg (N+1)(N+2)/2
    SO(4,2) the "Madelung group"    -> the (n+l) period structure

THE CONCRETE RESULT (measured below): the atomic "10" (Ne closure) that the
spatial ball and the Phi_s self-consistency could NEVER produce is exactly the
SO(4) cardinal -- the n=2 Coulomb shell (2s + 2p DEGENERATE = 8, so the
cumulative is 2 + 8 = 10). The spatial ball broke SO(4) -> SO(3) (it split
2s from 2p), giving 2, 8 instead of 2, 10. So the "10" is a SYMMETRY cardinal,
not a two-body force.

HONEST SCOPE: the representation theory of SO(3)/SO(4)/U(3)/SO(4,2) is
STANDARD external mathematics -- the comparison framework, exactly as
emergent_integers_symmetry cites L-commutes-with-Aut(G). The TNFR
contribution is (i) the reading "magic number = emergent cardinal (irrep
dim)", at the same ontological level as the number-theory program, and
(ii) the diagnosis that the spatial-ball mapping sat at the BOTTOM of the
symmetry chain and broke the dynamical degeneracies. The genuinely emergent
home of these cardinals is the integrable-OSCILLATOR substrate
(symplectic_substrate.py: H_sub is a sum of decoupled oscillators with a
U(2) dynamical symmetry, action-angle / Bohr-Sommerfeld). Deriving WHICH
dynamical group the full nonlinear operator dynamics realises (and whether
it reaches SO(4,2) / Madelung) is the open deep program; this benchmark
does NOT claim it.

Run:
    python benchmarks/emergent_shell_cardinals.py

Theoretical anchor: AGENTS.md (emergent geometry; discrete-mode regime);
benchmarks/emergent_integers_symmetry.py (cardinals = irrep dims);
benchmarks/emergent_shell_ordering.py (the spatial-ball mapping it deepens).
Status: RESEARCH (falsifier / reframing).
"""

from __future__ import annotations

import pathlib
import sys

import networkx as nx

_SRC = pathlib.Path(__file__).resolve().parents[1] / "src"
if str(_SRC) not in sys.path:
    sys.path.insert(0, str(_SRC))
_BENCH = pathlib.Path(__file__).resolve().parent
if str(_BENCH) not in sys.path:
    sys.path.insert(0, str(_BENCH))

from emergent_shell_ordering import solid_ball_graph  # noqa: E402
from tnfr.physics.emergent_chemistry import (  # noqa: E402
    structural_eigenmodes,
)

# Observed references (post-hoc identification only)
ATOMIC_NOBLE = [2, 10, 18, 36, 54, 86]  # SO(4,2) / Madelung
NUCLEAR_MAGIC = [2, 8, 20, 28, 50, 82]  # oscillator + spin-orbit


def closures(degeneracies: list[int], spin: int = 2) -> list[int]:
    """Cumulative shell closures = running sum of (spin x level degeneracy).

    This is the magic-number rule of a dynamical symmetry: each level is an
    irrep whose dimension is the structural degeneracy; the doublet factor
    ``spin=2`` is the per-mode capacity (the +/- phase-winding pair).
    """
    out: list[int] = []
    total = 0
    for d in degeneracies:
        total += spin * d
        out.append(total)
    return out


def so3_ladder(n: int = 5) -> list[int]:
    """SO(3) angular ladder: irrep dims 2l+1 (one radial node per l)."""
    return closures([2 * ell + 1 for ell in range(n)])


def so4_coulomb(n: int = 5) -> list[int]:
    """SO(4) Coulomb: level n has degeneracy n^2 (all l of n DEGENERATE)."""
    return closures([k * k for k in range(1, n + 1)])


def u3_oscillator(n: int = 5) -> list[int]:
    """U(3) 3D isotropic oscillator: level N degeneracy (N+1)(N+2)/2."""
    return closures([(N + 1) * (N + 2) // 2 for N in range(n)])


def ball_closures(G: nx.Graph) -> list[int]:
    """Measured closures of the spatial-ball mapping (the superficial one)."""
    shells = structural_eigenmodes(G, max_modes=40, gap_factor=4.0)
    out: list[int] = []
    total = 0
    for sh in shells:
        total += 2 * sh.multiplicity
        out.append(total)
    return out


def main() -> None:
    print("=" * 70)
    print("EMERGENT SHELL CARDINALS (dynamical-symmetry irreps, not a ball)")
    print("=" * 70)

    so3 = so3_ladder()
    so4 = so4_coulomb()
    u3 = u3_oscillator()

    # -- M1: magic numbers ARE cumulative dynamical-symmetry cardinals -------
    print("\n[M1] Magic numbers as cumulative irrep cardinals (2 x dim):")
    print(f"     SO(3) angular ladder (2l+1) : {so3}")
    print(f"     SO(4) Coulomb (n^2)         : {so4}")
    print(f"     U(3) 3D oscillator          : {u3}")
    assert so3 == [2, 8, 18, 32, 50], so3
    assert so4 == [2, 10, 28, 60, 110], so4
    assert u3 == [2, 8, 20, 40, 70], u3
    print("     -> PASS: each dynamical symmetry gives an EXACT magic-number")
    print("        family as cumulative irrep dimensions.")

    # -- M2: the atomic '10' is the SO(4) cardinal the spatial ball broke ----
    ball = ball_closures(solid_ball_graph(4, 16, 8))
    print("\n[M2] The atomic '10' (Ne) is the SO(4) n=2 cardinal:")
    print(f"     SO(4) Coulomb              : {so4[:4]}  (10 = 2 + [2s+2p=8])")
    print(f"     spatial ball (spherical)   : {ball[:5]}")
    print(f"     atomic noble gases         : {ATOMIC_NOBLE}")
    assert so4[1] == 10, "SO(4) n=2 closure is not 10"
    assert ball[:2] == [2, 8] and 10 not in ball[:5], "ball kept SO(4)"
    print("     -> PASS: SO(4) (2s+2p degenerate) gives 2, 10; the ball")
    print("        broke SO(4) -> SO(3) (split 2s/2p): 2, 8 -- no '10'.")
    print("        The '10' is a SYMMETRY CARDINAL, not a two-body force.")

    # -- M3: the symmetry chain (the spatial ball sat at the bottom) ---------
    print("\n[M3] The dynamical-symmetry chain (the deep layer climbs it):")
    print(f"     SO(3) box (spatial ball)   : {ball[:4]}   least symmetry")
    print(f"     SO(4) Coulomb              : {so4[:4]}   recovers the 10")
    print(f"     SO(4,2) Madelung (atomic)  : {ATOMIC_NOBLE[:4]}   periods")
    print(f"     U(3) oscillator (nuclear)  : {u3[:3]} -> nuclear "
          f"{NUCLEAR_MAGIC[:3]}")
    assert u3[:3] == NUCLEAR_MAGIC[:3], "U(3) != lower nuclear magic"
    print("     -> PASS: U(3) reproduces the lower nuclear magic 2, 8, 20")
    print("        (spin-orbit adds 28, 50, 82). The substrate is the")
    print("        integrable-oscillator home of these cardinals.")

    print("\n" + "=" * 70)
    print("VERDICT")
    print("=" * 70)
    print(
        "Magic numbers are CARDINALS of a dynamical symmetry (cumulative\n"
        "  irrep dimensions) -- the TNFR-native 'numbers are emergent'\n"
        "  layer (emergent_integers_symmetry), the SAME ontological level\n"
        "  as the number-theory program, NOT spatial counts of a ball.\n"
        "THE SUPERFICIALITY, DIAGNOSED: the spatial-ball mapping sat at\n"
        "  the BOTTOM of the symmetry chain (geometric SO(3) + a box) and\n"
        "  BROKE the dynamical degeneracies -- it split 2s from 2p, so it\n"
        "  gave 2, 8, 18, 20 and could never produce the atomic '10'.\n"
        "  That '10' is the SO(4) Coulomb cardinal (the n=2 shell, 2s+2p\n"
        "  degenerate); we hunted it as a two-body screening force when\n"
        "  it was a SYMMETRY cardinal all along.\n"
        "THE CHAIN: SO(3) box (ball) < SO(4) Coulomb (2,10,28) < SO(4,2)\n"
        "  Madelung (2,10,18,36,54,86, atomic); U(3) oscillator (2,8,20)\n"
        "  is the nuclear branch. Each level is an EXACT cardinal family.\n"
        "THE DEEP HOME: the integrable-oscillator substrate (H_sub = sum\n"
        "  of decoupled oscillators, U(2) dynamical symmetry, action-\n"
        "  angle / Bohr-Sommerfeld) is where these cardinals live -- not\n"
        "  a spatial Laplacian. OPEN: derive WHICH dynamical group the\n"
        "  full nonlinear operator dynamics realises, and whether it\n"
        "  reaches SO(4,2) / Madelung."
    )


if __name__ == "__main__":
    main()