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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: benchmarks/remesh_infinity_riemann_baseline.py

remesh_infinity_riemann_baseline.py

R∞-1a — REMESH global asymptotic limit baseline (Riemann side).

Scope (honest)

This benchmark tests a falsifiable numerical question about the naive form of branch B1 of the REMESH global reframe (see theory/TNFR_RIEMANN_RESEARCH_NOTES.md §13vicies-novies and /memories/repo/tnfr-riemann-program-status.md):

text
Q: Does the canonical operator ``apply_network_remesh``, applied
   with τ_g → ∞ to a stationary oscillatory EPI field whose
   component frequencies are the prime-ladder structural
   frequencies ``νf = k·log(p)``, produce a perturbation whose
   deviation from the time average carries structured
   (non-time-averaged) information that could, in principle,
   encode the oscillatory residual

       r_n = γ_n - γ̃_n = π · S(γ̃_n)

   between true Riemann zeros γ_n and the P28/P30 smooth targets
   γ̃_n?

Hypothesis under test (naive B1)

H1: REMESH^τ_g[EPI] retains structured non-trivial τ_g-dependence distinct from the time-average projection. This would be necessary (not sufficient) for REMESH-∞ to have any chance of encoding S(T)-like oscillatory information.

Falsification criterion

F1: If ‖REMESH^τ_g[EPI] - time_average(EPI)‖ → 0 monotonically as τ_g increases, then REMESH global on stationary dynamics is just a Cesàro-style projection onto the time mean. Naive B1 is refuted: such an operator cannot encode oscillatory residuals beyond what is already present in the time average. Pivot required.

Prior expectation (honest)

The canonical mixing law is

text
EPI_new = (1-α)·EPI_now + α·EPI[t-τ_l]
EPI_new = (1-α)·EPI_new + α·EPI[t-τ_g]

with α = 0.5. This is linear in the snapshots, so for a stationary process the expectation of REMESH^τ_g approaches a fixed convex combination of past expectations, which equals the time-average. The agent therefore expects F1 to trigger in this baseline test.

A positive (non-falsified) result would force re-examination of the mixing law's interaction with deterministic oscillatory snapshots versus stationary stochastic ones, and would justify R∞-1b (NS side) plus R∞-2 (analytical derivation of the τ_g → ∞ limit operator).

What R∞-1a does NOT do

  • Does NOT prove or disprove the Riemann Hypothesis.
  • Does NOT prove or disprove branch B1 in its general form (only the naive stationary-dynamics version tested here).
  • Does NOT touch the canonical engine; it only consumes apply_network_remesh and build_prime_ladder_graph.
  • Does NOT modify any operator semantics.

Status: EXPERIMENTAL — TNFR-Riemann R∞-1a (May 2026).

Source Code

python
"""R∞-1a — REMESH global asymptotic limit baseline (Riemann side).

Scope (honest)
--------------
This benchmark tests a **falsifiable** numerical question about the
naive form of branch B1 of the REMESH global reframe (see
``theory/TNFR_RIEMANN_RESEARCH_NOTES.md`` §13vicies-novies and
``/memories/repo/tnfr-riemann-program-status.md``):

    Q: Does the canonical operator ``apply_network_remesh``, applied
       with τ_g → ∞ to a stationary oscillatory EPI field whose
       component frequencies are the prime-ladder structural
       frequencies ``νf = k·log(p)``, produce a perturbation whose
       deviation from the time average carries structured
       (non-time-averaged) information that could, in principle,
       encode the oscillatory residual

           r_n = γ_n - γ̃_n = π · S(γ̃_n)

       between true Riemann zeros γ_n and the P28/P30 smooth targets
       γ̃_n?

Hypothesis under test (naive B1)
--------------------------------
H1: ``REMESH^τ_g[EPI]`` retains structured non-trivial τ_g-dependence
    distinct from the time-average projection.  This would be
    **necessary** (not sufficient) for REMESH-∞ to have any chance
    of encoding S(T)-like oscillatory information.

Falsification criterion
-----------------------
F1: If ``‖REMESH^τ_g[EPI] - time_average(EPI)‖ → 0`` monotonically
    as τ_g increases, then REMESH global on stationary dynamics is
    just a Cesàro-style projection onto the time mean.  Naive B1 is
    refuted: such an operator cannot encode oscillatory residuals
    beyond what is already present in the time average.  Pivot
    required.

Prior expectation (honest)
--------------------------
The canonical mixing law is

    EPI_new = (1-α)·EPI_now + α·EPI[t-τ_l]
    EPI_new = (1-α)·EPI_new + α·EPI[t-τ_g]

with α = 0.5.  This is linear in the snapshots, so for a stationary
process the expectation of REMESH^τ_g approaches a fixed convex
combination of past expectations, which equals the time-average.
The agent therefore expects **F1 to trigger** in this baseline test.

A positive (non-falsified) result would force re-examination of the
mixing law's interaction with deterministic oscillatory snapshots
versus stationary stochastic ones, and would justify R∞-1b (NS side)
plus R∞-2 (analytical derivation of the τ_g → ∞ limit operator).

What R∞-1a does NOT do
----------------------
* Does NOT prove or disprove the Riemann Hypothesis.
* Does NOT prove or disprove branch B1 in its general form (only the
  naive stationary-dynamics version tested here).
* Does NOT touch the canonical engine; it only consumes
  ``apply_network_remesh`` and ``build_prime_ladder_graph``.
* Does NOT modify any operator semantics.

Status: EXPERIMENTAL — TNFR-Riemann R∞-1a (May 2026).
"""

from __future__ import annotations

import json
import math
from collections import deque
from pathlib import Path
from typing import Any

import numpy as np

from tnfr.alias import get_attr, set_attr
from tnfr.constants.aliases import ALIAS_EPI
from tnfr.operators.remesh import apply_network_remesh
from tnfr.riemann.prime_ladder_hamiltonian import build_prime_ladder_graph

# ---------------------------------------------------------------------------
# Configuration
# ---------------------------------------------------------------------------

N_PRIMES: int = 10
MAX_POWER: int = 4
DT: float = 0.05  # Synthetic temporal step
TAU_LOCAL: int = 4
ALPHA: float = 0.5
TAU_GLOBAL_SWEEP: tuple[int, ...] = (4, 8, 16, 32, 64, 128, 256, 512)


# ---------------------------------------------------------------------------
# Helpers
# ---------------------------------------------------------------------------


def synthetic_epi_snapshot(G, t: float) -> dict:
    """Stationary oscillatory EPI field at time ``t``.

    For each node (p, k) the canonical structural frequency is
    νf = k · log(p).  The synthetic field is

        EPI(p, k; t) = (log(p) / k) · cos(νf · t)

    The amplitude log(p)/k reproduces the canonical von Mangoldt
    weighting Λ(p^k) = log(p) attenuated by the echo index k.  The
    cosine carries the canonical phase.  Mean over t equals 0.
    """
    out: dict = {}
    for node in G.nodes():
        p, k = node
        log_p = math.log(p)
        nu_f = k * log_p
        out[node] = (log_p / k) * math.cos(nu_f * t)
    return out


def populate_history(G, n_steps: int) -> None:
    """Pre-load ``_epi_hist`` with deterministic oscillatory snapshots.

    The most recent snapshot is also written into the live EPI
    attribute so that ``apply_network_remesh`` sees a consistent
    "present" state.
    """
    hist: deque = deque(maxlen=n_steps + 10)
    for step in range(n_steps):
        t = step * DT
        hist.append(synthetic_epi_snapshot(G, t))
    G.graph["_epi_hist"] = hist
    last = hist[-1]
    for n, nd in G.nodes(data=True):
        set_attr(nd, ALIAS_EPI, last[n])


def snapshot_epi(G) -> dict:
    return {n: float(get_attr(nd, ALIAS_EPI, 0.0)) for n, nd in G.nodes(data=True)}


def restore_epi(G, snap: dict) -> None:
    for n, nd in G.nodes(data=True):
        set_attr(nd, ALIAS_EPI, snap[n])


def time_average_field(G) -> dict:
    hist = G.graph["_epi_hist"]
    nodes = list(G.nodes())
    avg: dict = {n: 0.0 for n in nodes}
    for snap in hist:
        for n in nodes:
            avg[n] += snap[n]
    inv = 1.0 / len(hist)
    return {n: v * inv for n, v in avg.items()}


def vec(d: dict, nodes: list) -> np.ndarray:
    return np.asarray([d[n] for n in nodes], dtype=float)


# ---------------------------------------------------------------------------
# Main protocol
# ---------------------------------------------------------------------------


def run_track_A_single_application(
    G,
    nodes,
    baseline_epi: dict,
    avg_vec: np.ndarray,
    baseline_to_avg: float,
) -> list[dict[str, Any]]:
    """Track A — single application of REMESH at sweeping τ_g.

    Tests the *naive* notion of REMESH-∞ as one-shot operator with
    τ_g → ∞.  Expected (and confirmed empirically in the first run):
    no well-defined limit — output depends on the phase of the specific
    past snapshot sampled at lag τ_g.
    """
    G.graph["REMESH_TAU_LOCAL"] = TAU_LOCAL
    G.graph["REMESH_ALPHA"] = ALPHA
    baseline_vec = vec(baseline_epi, nodes)

    results: list[dict[str, Any]] = []
    for tau_g in TAU_GLOBAL_SWEEP:
        G.graph["REMESH_TAU_GLOBAL"] = tau_g
        restore_epi(G, baseline_epi)
        apply_network_remesh(G)
        post = snapshot_epi(G)
        post_vec = vec(post, nodes)
        dist_to_avg = float(np.linalg.norm(post_vec - avg_vec))
        relative_to_avg = dist_to_avg / (baseline_to_avg + 1e-12)
        delta = post_vec - baseline_vec
        results.append(
            {
                "tau_g": tau_g,
                "dist_to_time_average": dist_to_avg,
                "relative_to_baseline_avg_distance": relative_to_avg,
                "delta_l2": float(np.linalg.norm(delta)),
                "delta_max": float(np.max(np.abs(delta))),
                "delta_var": float(np.var(delta)),
            }
        )
    return results


def run_track_B_iterated(
    G,
    nodes,
    baseline_epi: dict,
    avg_vec: np.ndarray,
    baseline_to_avg: float,
    tau_g_fixed: int = 16,
    n_iter_max: int = 64,
) -> list[dict[str, Any]]:
    """Track B — iterated REMESH at fixed τ_g.

    Tests the *canonical* operationalization of REMESH-∞ as
    REMESH^N in the N → ∞ limit, with τ_g held fixed.  After each
    application, the new EPI snapshot is appended to ``_epi_hist``
    so that the next iteration sees an updated past.  This is the
    natural Banach iteration of the REMESH map; if the map is a
    contraction the iterates converge to a fixed point (attractor).

    Restores the history to its initial state at the end (the
    benchmark must not have side effects on the caller's view of
    ``G``).
    """
    import copy

    G.graph["REMESH_TAU_LOCAL"] = TAU_LOCAL
    G.graph["REMESH_TAU_GLOBAL"] = tau_g_fixed
    G.graph["REMESH_ALPHA"] = ALPHA

    hist_backup = deque(
        copy.deepcopy(list(G.graph["_epi_hist"])), maxlen=G.graph["_epi_hist"].maxlen
    )
    restore_epi(G, baseline_epi)

    iter_log: list[dict[str, Any]] = []
    prev_vec = vec(baseline_epi, nodes)
    for n_iter in range(1, n_iter_max + 1):
        apply_network_remesh(G)
        post = snapshot_epi(G)
        # Feed the new state into the history so the next iteration
        # is genuinely iterated (otherwise REMESH always sees the
        # same fixed past snapshot).
        G.graph["_epi_hist"].append(post)

        post_vec = vec(post, nodes)
        step_delta = float(np.linalg.norm(post_vec - prev_vec))
        dist_to_avg = float(np.linalg.norm(post_vec - avg_vec))
        relative_to_avg = dist_to_avg / (baseline_to_avg + 1e-12)
        iter_log.append(
            {
                "n_iter": n_iter,
                "step_delta_l2": step_delta,
                "dist_to_time_average": dist_to_avg,
                "relative_to_baseline_avg_distance": relative_to_avg,
                "norm": float(np.linalg.norm(post_vec)),
            }
        )
        prev_vec = post_vec

    # Restore history & EPI so subsequent tracks see clean state.
    G.graph["_epi_hist"] = hist_backup
    restore_epi(G, baseline_epi)
    return iter_log


def run() -> dict[str, Any]:
    G = build_prime_ladder_graph(n_primes=N_PRIMES, max_power=MAX_POWER)
    nodes = list(G.nodes())
    n_nodes = len(nodes)

    max_tau = max(TAU_GLOBAL_SWEEP)
    populate_history(G, n_steps=max_tau + 20)

    G.graph["REMESH_TAU_LOCAL"] = TAU_LOCAL
    G.graph["REMESH_ALPHA"] = ALPHA

    baseline_epi = snapshot_epi(G)
    time_avg = time_average_field(G)

    baseline_vec = vec(baseline_epi, nodes)
    avg_vec = vec(time_avg, nodes)
    baseline_to_avg = float(np.linalg.norm(baseline_vec - avg_vec))

    # -----------------------------------------------------------------
    # Track A: single application, sweeping τ_g
    # -----------------------------------------------------------------
    track_A = run_track_A_single_application(
        G, nodes, baseline_epi, avg_vec, baseline_to_avg
    )

    # -----------------------------------------------------------------
    # Track B: iterated REMESH at fixed τ_g (canonical Banach iteration)
    # -----------------------------------------------------------------
    track_B = run_track_B_iterated(
        G,
        nodes,
        baseline_epi,
        avg_vec,
        baseline_to_avg,
        tau_g_fixed=16,
        n_iter_max=512,
    )

    # -----------------------------------------------------------------
    # Track C: spectral diagnostic of the Track B late-time state
    # -----------------------------------------------------------------
    # Re-run a short iteration to recover the late state and analyse
    # its spectral content along the νf-ordered axis.  If the iterated
    # operator carries any prime-ladder oscillatory structure, the
    # power spectrum of the late state (ordered by νf = k·log(p))
    # should show non-trivial peaks beyond the DC component.
    import copy

    hist_backup = deque(
        copy.deepcopy(list(G.graph["_epi_hist"])), maxlen=G.graph["_epi_hist"].maxlen
    )
    G.graph["REMESH_TAU_GLOBAL"] = 16
    restore_epi(G, baseline_epi)
    for _ in range(256):
        apply_network_remesh(G)
        G.graph["_epi_hist"].append(snapshot_epi(G))
    late_state = snapshot_epi(G)
    G.graph["_epi_hist"] = hist_backup
    restore_epi(G, baseline_epi)

    late_vec = vec(late_state, nodes)
    nu_f = np.asarray([n[1] * math.log(n[0]) for n in nodes])
    order = np.argsort(nu_f)
    late_ordered = late_vec[order]
    # Subtract mean to isolate oscillatory content
    late_demean = late_ordered - np.mean(late_ordered)
    spectrum = np.fft.rfft(late_demean)
    power = np.abs(spectrum) ** 2
    total_power = float(np.sum(power))
    dc_fraction = float(power[0] / (total_power + 1e-12)) if total_power > 0 else 0.0
    top3_idx = np.argsort(power)[-3:][::-1].tolist()
    top3_power = [float(power[i]) for i in top3_idx]
    top3_fraction = [float(p / (total_power + 1e-12)) for p in top3_power]

    track_C_spectral = {
        "iterations": 256,
        "tau_g_fixed": 16,
        "ordered_axis": "nu_f = k * log(p)",
        "total_oscillatory_power": total_power,
        "dc_fraction_post_demean": dc_fraction,
        "top3_freq_bins": top3_idx,
        "top3_power": top3_power,
        "top3_power_fraction": top3_fraction,
        "late_state_l2_norm": float(np.linalg.norm(late_vec)),
        "late_state_mean": float(np.mean(late_vec)),
    }

    results = track_A  # Backward-compatible alias

    # ---------------------------------------------------------------
    # Falsification check (F1) — Track A
    # ---------------------------------------------------------------
    rel_seq = [r["relative_to_baseline_avg_distance"] for r in results]
    monotone_decreasing = all(
        rel_seq[i] >= rel_seq[i + 1] for i in range(len(rel_seq) - 1)
    )
    final_rel = rel_seq[-1]
    F1_triggered = monotone_decreasing and final_rel < 0.1

    # ---------------------------------------------------------------
    # Convergence check (F2) — Track B
    # ---------------------------------------------------------------
    # F2: REMESH^N converges to a fixed point (step delta → 0).
    # If F2 triggers, the iterated operator has a well-defined limit
    # and the question becomes: does the fixed point carry any
    # oscillatory residual information?  If F2 fails, iterated REMESH
    # diverges or orbits and a different operationalization is needed.
    final_step_delta = track_B[-1]["step_delta_l2"]
    initial_step_delta = track_B[0]["step_delta_l2"]
    step_decay_ratio = (
        final_step_delta / initial_step_delta
        if initial_step_delta > 1e-12
        else float("nan")
    )
    F2_triggered = final_step_delta < 1e-6 or step_decay_ratio < 0.01
    track_B_final_rel = track_B[-1]["relative_to_baseline_avg_distance"]

    summary = {
        "config": {
            "n_primes": N_PRIMES,
            "max_power": MAX_POWER,
            "n_nodes": n_nodes,
            "dt": DT,
            "alpha": ALPHA,
            "tau_local": TAU_LOCAL,
            "tau_global_sweep": list(TAU_GLOBAL_SWEEP),
            "track_B_tau_global_fixed": 16,
            "track_B_n_iter": 512,
        },
        "baseline_to_time_average_distance": baseline_to_avg,
        "track_A_single_application": track_A,
        "track_B_iterated": track_B,
        "track_C_spectral": track_C_spectral,
        "falsification": {
            "F1_criterion": (
                "REMESH single-application sweep → time_average "
                "(monotone decreasing distance, final < 10% of baseline gap)"
            ),
            "F1_monotone_decreasing": monotone_decreasing,
            "F1_final_relative_distance": final_rel,
            "F1_triggered": F1_triggered,
            "F1_interpretation": (
                "Naive single-application B1 REFUTED (Cesàro projection)"
                if F1_triggered
                else "Naive single-application B1 NOT refuted by F1"
            ),
            "F2_criterion": (
                "REMESH^N iterated converges to fixed point "
                "(step delta → 0 or decay ratio < 1%)"
            ),
            "F2_step_decay_ratio": step_decay_ratio,
            "F2_final_step_delta": final_step_delta,
            "F2_triggered": F2_triggered,
            "F2_track_B_final_rel_to_avg": track_B_final_rel,
            "F2_interpretation": (
                "Iterated REMESH has well-defined fixed point — " "examine its content"
                if F2_triggered
                else "Iterated REMESH does NOT converge to fixed point "
                "within tested horizon"
            ),
        },
    }
    return summary


def print_table(summary: dict[str, Any]) -> None:
    print("=" * 78)
    print("R∞-1a — REMESH global asymptotic baseline (Riemann side)")
    print("=" * 78)
    cfg = summary["config"]
    print(
        f"Prime-ladder: n_primes={cfg['n_primes']}, max_power={cfg['max_power']}, "
        f"n_nodes={cfg['n_nodes']}"
    )
    print(f"α = {cfg['alpha']}, τ_l = {cfg['tau_local']}, dt = {cfg['dt']}")
    print(
        f"Baseline-to-time-average distance: "
        f"{summary['baseline_to_time_average_distance']:.6e}"
    )
    print()
    print("--- Track A: single application, τ_g sweep ---")
    print(
        f"{'τ_g':>6} {'dist→avg':>14} {'rel→avg':>10} "
        f"{'δ_L2':>12} {'δ_max':>12} {'δ_var':>12}"
    )
    print("-" * 78)
    for row in summary["track_A_single_application"]:
        print(
            f"{row['tau_g']:>6} "
            f"{row['dist_to_time_average']:>14.6e} "
            f"{row['relative_to_baseline_avg_distance']:>10.4f} "
            f"{row['delta_l2']:>12.6e} "
            f"{row['delta_max']:>12.6e} "
            f"{row['delta_var']:>12.6e}"
        )
    print()
    print(f"--- Track B: iterated REMESH at τ_g={cfg['track_B_tau_global_fixed']} ---")
    print(
        f"{'N':>4} {'step_delta':>14} {'dist→avg':>14} {'rel→avg':>10} "
        f"{'‖EPI‖':>12}"
    )
    print("-" * 78)
    # Print first 5, every 8th, and last 3 to keep output readable
    rows = summary["track_B_iterated"]
    indices = sorted(
        set(
            list(range(5))
            + list(range(7, len(rows), 8))
            + list(range(len(rows) - 3, len(rows)))
        )
    )
    for i in indices:
        if 0 <= i < len(rows):
            row = rows[i]
            print(
                f"{row['n_iter']:>4} "
                f"{row['step_delta_l2']:>14.6e} "
                f"{row['dist_to_time_average']:>14.6e} "
                f"{row['relative_to_baseline_avg_distance']:>10.4f} "
                f"{row['norm']:>12.6e}"
            )
    print()
    fals = summary["falsification"]
    print("--- Falsification summary ---")
    print(
        f"F1 (single-application Cesàro): triggered={fals['F1_triggered']} | "
        f"monotone={fals['F1_monotone_decreasing']} | "
        f"final_rel={fals['F1_final_relative_distance']:.4f}"
    )
    print(f"  → {fals['F1_interpretation']}")
    print(
        f"F2 (iterated fixed point):      triggered={fals['F2_triggered']} | "
        f"step_decay={fals['F2_step_decay_ratio']:.4e} | "
        f"final_step_delta={fals['F2_final_step_delta']:.4e}"
    )
    print(f"  → {fals['F2_interpretation']}")
    print(f"  Track B final rel→avg: {fals['F2_track_B_final_rel_to_avg']:.4f}")

    spec = summary["track_C_spectral"]
    print()
    print("--- Track C: spectral diagnostic of late-iterated state ---")
    print(
        f"After {spec['iterations']} iterations at τ_g={spec['tau_g_fixed']}, "
        f"late state ordered by νf = k·log(p):"
    )
    print(
        f"  ‖late_state‖_L2 = {spec['late_state_l2_norm']:.4e}, "
        f"mean = {spec['late_state_mean']:.4e}"
    )
    print(
        f"  Total oscillatory power (post-demean): {spec['total_oscillatory_power']:.4e}"
    )
    print(f"  DC fraction post-demean: {spec['dc_fraction_post_demean']:.4e}")
    print(f"  Top-3 freq bins: {spec['top3_freq_bins']}")
    print(
        f"  Top-3 power fractions: "
        f"{[f'{f:.4f}' for f in spec['top3_power_fraction']]}"
    )
    print("=" * 78)


def main() -> None:
    summary = run()
    out_dir = Path("results") / "remesh_infinity"
    out_dir.mkdir(parents=True, exist_ok=True)
    out_path = out_dir / "remesh_infinity_riemann_baseline.json"
    with out_path.open("w", encoding="utf-8") as f:
        json.dump(summary, f, indent=2, default=str)
    print_table(summary)
    print(f"JSON output: {out_path}")


if __name__ == "__main__":
    main()