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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: benchmarks/u2_destabilization_irreversibility.py

u2_destabilization_irreversibility.py

U2 destabilization-irreversibility test -- validated instrument + pre-registered falsification record.

WHAT THIS IS

A TNFR-MOTIVATED empirical test and its honest outcome. TNFR grammar rule U2 ("a destabilizer requires a stabilizer"), derived from the convergence requirement of the nodal equation

text
d EPI/dt = vf * dNFR,   coherence persists  <=>  integral(vf*dNFR) dt < inf,

predicts that in a persistently coherent signal, sustained destabilization (a run of consecutive drops in a coherence proxy c(t)) should be SUPPRESSED relative to a baseline that preserves all linear structure. This module tests whether that signature is a universal EXTERNAL empirical regularity.

IMPORTANT SCOPE. This is TNFR-motivated (the statistic derives from U2) but NOT TNFR-mechanistic: earthquakes, markets, rivers, heart-rate are NOT TNFR networks; c(t) is a proxy. U2 remains canonically true INSIDE TNFR regardless of the outcome here (it is a theorem of the nodal equation). This module only asks whether U2's qualitative signature generalizes outward.

STATISTIC (pre-registered): overload_D(L=3, W=4) = number of length-4 windows of the increment-sign sequence of c(t) containing >= 3 drops. Uses only the SIGN of increments, hence invariant to any monotone rescaling of c (only the DIRECTION of coherence matters).

NULL (pre-registered): IAAFT surrogates (preserve the power spectrum AND the marginal distribution => preserve all linear autocorrelation; destroy only nonlinear / higher-order / time-irreversible structure). This is exactly what standard linear tools (ARMA/GARCH/spectral) already capture, so a significant result = structure those tools do NOT predict. Two-sided: p_lower => SUPPRESSION (U2-like), p_upper => AMPLIFICATION (anti-U2).

INSTRUMENT VALIDATION (reproducible below, no network needed)

  1. CALIBRATION: false-positive rate ~ alpha on linear / time-reversible processes (iid, AR(1), AR(2), ARMA) -- the test must NOT fire on these.
  2. POWER: an injected, tunable U2 constraint (rho) is detected with rising power; rho=0 -> ~alpha, rho>=0.25 -> ~1.0. This proves a U2 constraint leaves a signature BEYOND linear autocorrelation (it is not linearly absorbable) and the test sees it.

PRE-REGISTERED REAL-DATA RESULT (recorded; needs network + pyedflib/wfdb/yfinance)

Six domains, directions fixed from domain physics BEFORE running, IAAFT null, 500 surrogates, Bonferroni alpha = 0.05/6 = 0.0083:

text
domain         field        pred           observed        z       match
EQ-magnitude   geophysics   SUPPRESSION    SUPPRESSION    -3.79    yes
RR-interval    physiology   SUPPRESSION    AMPLIFICATION  +2.69    no
EQ-interevent  geophysics   AMPLIFICATION  none (ns)      -1.70    --
FIN-equity     markets      AMPLIFICATION  AMPLIFICATION  +2.71    yes
FIN-alt        markets      AMPLIFICATION  SUPPRESSION    -4.16    no
STREAMFLOW     hydrology    AMPLIFICATION  AMPLIFICATION  +23.9    yes

VERDICT: the structural sign hypothesis is FALSIFIED. 3/6 ~ chance, and -- decisively -- FIN-equity (stock indices) AMPLIFIES while FIN-alt (crypto/FX/commodity) SUPPRESSES under the same operationalization (c = -|log-return|): markets contradict themselves, so the sign is NOT a clean dynamical-character property (it is idiosyncratic / data-microstructure sensitive, e.g. equity weekend/overnight gaps vs 24/7 crypto). EQ-interevent failed because Omori clustering lives in the LINEAR autocorrelation, which IAAFT preserves.

CONCLUSION: U2's suppression is NOT a universal external regularity; there is no demonstrated TNFR-specific cross-domain empirical law here. What survives is (i) a calibrated + powered nonlinearity / time-irreversibility instrument (NOT TNFR-exclusive -- it is a standard surrogate-data test) and (ii) a clean pre-registered negative that prevents overclaiming. EQ-magnitude suppression and streamflow amplification are genuine but are known seismology / hydrology, not TNFR.

Source Code

python
"""U2 destabilization-irreversibility test -- validated instrument + pre-registered
falsification record.

WHAT THIS IS
------------
A TNFR-MOTIVATED empirical test and its honest outcome. TNFR grammar rule U2
("a destabilizer requires a stabilizer"), derived from the convergence requirement
of the nodal equation

    d EPI/dt = vf * dNFR,   coherence persists  <=>  integral(vf*dNFR) dt < inf,

predicts that in a persistently coherent signal, *sustained destabilization*
(a run of consecutive drops in a coherence proxy c(t)) should be SUPPRESSED
relative to a baseline that preserves all linear structure. This module tests
whether that signature is a universal EXTERNAL empirical regularity.

IMPORTANT SCOPE. This is TNFR-*motivated* (the statistic derives from U2) but NOT
TNFR-*mechanistic*: earthquakes, markets, rivers, heart-rate are NOT TNFR networks;
c(t) is a proxy. U2 remains canonically true INSIDE TNFR regardless of the outcome
here (it is a theorem of the nodal equation). This module only asks whether U2's
qualitative signature generalizes outward.

STATISTIC (pre-registered): overload_D(L=3, W=4) = number of length-4 windows of the
increment-sign sequence of c(t) containing >= 3 drops. Uses only the SIGN of
increments, hence invariant to any monotone rescaling of c (only the DIRECTION of
coherence matters).

NULL (pre-registered): IAAFT surrogates (preserve the power spectrum AND the marginal
distribution => preserve all linear autocorrelation; destroy only nonlinear /
higher-order / time-irreversible structure). This is exactly what standard linear
tools (ARMA/GARCH/spectral) already capture, so a significant result = structure those
tools do NOT predict. Two-sided: p_lower => SUPPRESSION (U2-like), p_upper =>
AMPLIFICATION (anti-U2).

INSTRUMENT VALIDATION (reproducible below, no network needed)
------------------------------------------------------------
1. CALIBRATION: false-positive rate ~ alpha on linear / time-reversible processes
   (iid, AR(1), AR(2), ARMA) -- the test must NOT fire on these.
2. POWER: an injected, tunable U2 constraint (rho) is detected with rising power;
   rho=0 -> ~alpha, rho>=0.25 -> ~1.0. This proves a U2 constraint leaves a signature
   BEYOND linear autocorrelation (it is not linearly absorbable) and the test sees it.

PRE-REGISTERED REAL-DATA RESULT (recorded; needs network + pyedflib/wfdb/yfinance)
---------------------------------------------------------------------------------
Six domains, directions fixed from domain physics BEFORE running, IAAFT null, 500
surrogates, Bonferroni alpha = 0.05/6 = 0.0083:

    domain         field        pred           observed        z       match
    EQ-magnitude   geophysics   SUPPRESSION    SUPPRESSION    -3.79    yes
    RR-interval    physiology   SUPPRESSION    AMPLIFICATION  +2.69    no
    EQ-interevent  geophysics   AMPLIFICATION  none (ns)      -1.70    --
    FIN-equity     markets      AMPLIFICATION  AMPLIFICATION  +2.71    yes
    FIN-alt        markets      AMPLIFICATION  SUPPRESSION    -4.16    no
    STREAMFLOW     hydrology    AMPLIFICATION  AMPLIFICATION  +23.9    yes

VERDICT: the structural sign hypothesis is FALSIFIED. 3/6 ~ chance, and -- decisively --
FIN-equity (stock indices) AMPLIFIES while FIN-alt (crypto/FX/commodity) SUPPRESSES under
the *same* operationalization (c = -|log-return|): markets contradict themselves, so the
sign is NOT a clean dynamical-character property (it is idiosyncratic / data-microstructure
sensitive, e.g. equity weekend/overnight gaps vs 24/7 crypto). EQ-interevent failed because
Omori clustering lives in the LINEAR autocorrelation, which IAAFT preserves.

CONCLUSION: U2's suppression is NOT a universal external regularity; there is no
demonstrated TNFR-specific cross-domain empirical law here. What survives is (i) a
calibrated + powered nonlinearity / time-irreversibility instrument (NOT TNFR-exclusive --
it is a standard surrogate-data test) and (ii) a clean pre-registered negative that
prevents overclaiming. EQ-magnitude suppression and streamflow amplification are genuine
but are known seismology / hydrology, not TNFR.
"""

from __future__ import annotations

import numpy as np


# --------------------------------------------------------------------- apparatus
def iaaft(x, rng, iters=40):
    """Iterative amplitude-adjusted Fourier transform surrogate: preserves power
    spectrum (all linear autocorrelation) AND marginal distribution."""
    x = np.asarray(x, float)
    n = len(x)
    amp = np.abs(np.fft.rfft(x))
    srt = np.sort(x)
    s = rng.permutation(x)
    for _ in range(iters):
        S = np.fft.rfft(s)
        s = np.fft.irfft(amp * np.exp(1j * np.angle(S)), n=n)
        s = srt[np.argsort(np.argsort(s))]
    return s


def overload_drop(c, L=3, W=4):
    """#length-W windows of the increment-sign sequence with >= L drops (c decreasing)."""
    d = (np.diff(np.asarray(c, float)) < 0).astype(int)
    m = len(d)
    if m < W:
        return 0
    cs = np.cumsum(d)
    wsum = cs[W - 1 :] - np.concatenate([[0], cs[: m - W]])
    return int(np.sum(wsum >= L))


def iaaft_test(signals, L=3, W=4, n_sur=500, seed=0, iters=40):
    """Two-sided IAAFT surrogate test pooled over a list of signals."""
    rng = np.random.default_rng(seed)
    real = sum(overload_drop(c, L, W) for c in signals)
    null = np.empty(n_sur)
    for i in range(n_sur):
        null[i] = sum(overload_drop(iaaft(c, rng, iters), L, W) for c in signals)
    mu, sd = float(null.mean()), float(null.std())
    return {
        "real": int(real),
        "null_mean": round(mu, 1),
        "z": round((real - mu) / (sd + 1e-12), 2),
        "p_lower": round(float(np.mean(null <= real)), 4),
        "p_upper": round(float(np.mean(null >= real)), 4),
    }


# --------------------------------------------------------------------- generators
def _ar(rng, n, coeffs, sd):
    x = rng.standard_normal(n)
    p = len(coeffs)
    for t in range(p, n):
        x[t] = (
            sum(c * x[t - 1 - j] for j, c in enumerate(coeffs))
            + sd * rng.standard_normal()
        )
    return x


def gen(kind, n, rng):
    if kind == "iid":
        return rng.standard_normal(n)
    if kind == "ar1_0.5":
        return _ar(rng, n, [0.5], np.sqrt(1 - 0.25))
    if kind == "ar1_0.9":
        return _ar(rng, n, [0.9], np.sqrt(1 - 0.81))
    if kind == "ar2":
        return _ar(rng, n, [0.6, 0.3], 0.5)
    if kind == "arma":
        e = rng.standard_normal(n)
        x = np.zeros(n)
        for t in range(1, n):
            x[t] = 0.7 * x[t - 1] + e[t] + 0.4 * e[t - 1]
        return x
    raise ValueError(kind)


def gen_u2(n, rng, phi=0.9, rho=0.5, L=3):
    """AR(1) base with an injected U2 constraint: a run of L-1 consecutive drops is,
    with probability rho, prevented from extending. Nonlinear and time-irreversible."""
    x = np.empty(n)
    x[0] = 0.0
    sd = np.sqrt(1 - phi * phi)
    drops = 0
    for t in range(1, n):
        nx = phi * x[t - 1] + sd * rng.standard_normal()
        if nx < x[t - 1]:
            if drops >= L - 1 and rng.random() < rho:
                nx = x[t - 1] + (x[t - 1] - nx)
                drops = 0
            else:
                drops += 1
        else:
            drops = 0
        x[t] = nx
    return x


def power(rho, n=4000, reps=20, n_sur=150, phi=0.9, alpha=0.05, n_sig=6, iters=18):
    hits = 0
    for r in range(reps):
        rng = np.random.default_rng(1000 + r)
        sigs = [gen_u2(n, rng, phi=phi, rho=rho) for _ in range(n_sig)]
        hits += (
            iaaft_test(sigs, 3, 4, n_sur, seed=7000 + r, iters=iters)["p_lower"] < alpha
        )
    return hits / reps


def main():
    print("U2 irreversibility instrument -- self-contained validation (synthetic).\n")
    print("(1) CALIBRATION (false-positive ~ alpha; p_lower in [.025,.975] = ok)")
    for kind in ("iid", "ar1_0.5", "ar1_0.9", "ar2", "arma"):
        rng = np.random.default_rng(0)
        sigs = [gen(kind, 3000, rng) for _ in range(6)]
        r = iaaft_test(sigs, 3, 4, 250, seed=0, iters=20)
        ok = "ok" if 0.025 < r["p_lower"] < 0.975 else "FIRES"
        print(f"    {kind:9} z={r['z']:>6} p_lower={r['p_lower']:<6} {ok}")
    print("\n(2) POWER to detect an injected U2 constraint (rho):")
    for rho in (0.0, 0.5, 1.0):
        print(f"    rho={rho:>3}  power(p_lower<0.05) = {power(rho):.2f}")
    print("\nSee module docstring for the pre-registered real-data result (FALSIFIED).")


if __name__ == "__main__":
    main()