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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: docs/STRUCTURAL_FIELDS_TETRAD.md

STRUCTURAL_FIELDS_TETRAD.md

TNFR Structural Field Tetrad (Canonical)

Status: CANONICAL (Updated 2025-11-12)

This guide centralizes the physics, math, implementation, telemetry, and usage of the four structural fields that characterize TNFR networks across scales. It is the single canonical source for formal definitions of Φ_s, |∇φ|, K_φ, and ξ_C; other documents SHOULD reference this file instead of restating the equations.

  • Structural Potential (Φ_s): Global potential from ΔNFR distribution (inverse-square law analog)
  • Phase Gradient (|∇φ|): Local phase desynchronization (stress proxy)
  • Phase Curvature (K_φ): Geometric confinement/torsion
  • Coherence Length (ξ_C): Spatial correlation scale of local coherence

References (single sources of truth):

  • Theory: TNFR.pdf (§1–2), UNIFIED_GRAMMAR_RULES.md (§U1–U6)
  • Canonical status and thresholds: AGENTS.md (Structural Field Tetrad)
  • Implementation: src/tnfr/physics/fields.py
  • Research background: docs/STRUCTURAL_FIELDS_TETRAD.md (this document)
  • Physics module overview: src/tnfr/physics/README.md (unified, expandable)

1. Physics Basis

Nodal equation (core TNFR dynamics):

[\frac{\partial EPI}{\partial t} = \nu_f, \Delta NFR(t)]

Integrated form and boundedness (U2):

[EPI(t_f) = EPI(t_0) + \int_{t_0}^{t_f}! \nu_f(\tau),\Delta NFR(\tau), d\tau,\quad \text{require } \int \nu_f, \Delta NFR, dt < \infty]

Operator grammar enforces convergence via stabilizers (IL, THOL) around destabilizers (OZ, ZHIR, VAL) and requires phase-verification for coupling (U3). Telemetry fields below are read-only; they do not mutate EPI.


2. Canonical Field Definitions

All functions live in tnfr.physics.fields and accept a NetworkX graph G with the following node attributes when applicable:

  • theta or phase (float in [0, 2π))
  • delta_nfr or dnfr (float; structural pressure proxy)
  • Optional coherence (float ∈ (0,1]) for ξ_C estimation

2.1 Structural Potential Φ_s (Global)

Definition (α = 2 by default):

[\Phi_s(i) = \sum_{j\neq i} \frac{\Delta NFR_j}{d(i,j)^\alpha}]

  • Long-range, global potential derived from ΔNFR distribution
  • Safety criterion (telemetry-based): per-node |Φ_s| < π/4 ≈ 0.785 (quarter phase-wrap) and drift ΔΦ_s < π/2 ≈ 1.571 (half phase-wrap). These are π-derived, tying the confinement bound to the one genuine structural scale (π).
  • Implementation: compute_structural_potential(G, alpha=2.0)

Linear response: Perturbation analysis confirms |r| = 1.000 (Pearson correlation) between DNFR changes and Phi_s response, validating its 0th-order position in the operator-derivative tower. See example 39.

2.2 Phase Gradient |∇φ| (Local stress)

Wrapped neighbor differences (circular topology):

[|\nabla\varphi|(i) = \operatorname{mean}_{j\in N(i)} \big|\operatorname{wrap}(\varphi_j-\varphi_i)\big|]

  • Early warning for fragmentation via local desynchronization
  • Kinematic bound: |∇φ| ≤ π — a mean of WRAPPED phase angles, the SAME bound as K_φ (π scales the whole phase sector). γ/π ≈ 0.1837 is a heuristic early-warning level, not a derived bound: the measured sync-onset is ≈ 0.29 and σ-dependent.
  • Implementation: compute_phase_gradient(G)

2.3 Phase Curvature K_φ (Geometric confinement)

Deviation from circular neighbor mean:

[K_\varphi(i) = \varphi_i - \frac{1}{\deg(i)} \sum_{j\in N(i)} \varphi_j]

  • Use circular mean (unit vectors) and wrap deltas to (−π, π]
  • Local threshold: |K_φ| ≥ 2.8274 flags confinement/fault zones (classical: 90% of theoretical maximum π)
  • Multiscale behavior: var(K_φ) ~ 1/r^α with α≈2.76 (asymptotic freedom)
  • Implementation:
    • compute_phase_curvature(G)
    • compute_k_phi_multiscale_variance(G, scales)
    • fit_k_phi_asymptotic_alpha(var_by_scale)
    • k_phi_multiscale_safety(G, alpha_hint=2.76)

2.4 Coherence Length ξ_C (Spatial correlations)

Local coherence: (c_i = 1 / (1 + |\Delta NFR_i|)) and spatial autocorrelation (C(r) = \langle c_i c_j\rangle) for pairs at distance r. Fit exponential decay:

[C(r) \sim \exp(-r/\xi_C)]

  • Critical point behavior: ξ_C diverges near I_c (phase transitions)
  • Safety cues: ξ_C > system diameter (critical), ξ_C > π × mean_distance (watch, π≈3.1416), ξ_C < mean_distance (stable)
  • Implementation:
    • estimate_coherence_length(G, coherence_key='coherence')
    • fit_correlation_length_exponent(Is, xi_vals, I_c, min_distance)

3. Contracts, Units, and Invariants

  • Read-only telemetry: No EPI mutation; fields compute from current node attributes
  • Units: ν_f in Hz_str; do not mix with physical Hz (Invariant #2)
  • Phase coupling requires explicit verification |Δφ| ≤ Δφ_max (U3)
  • Valid sequences must satisfy U1 initiation/closure and U2 boundedness
  • Nested EPIs require stabilizers at each level (U5)

Edge cases:

  • Isolated nodes: return 0.0 for gradients/curvature; ignore in Φ_s sums
  • Missing attributes: functions attempt sensible defaults; callers should initialize at least theta/phase and delta_nfr/dnfr

4. API Summary (tnfr.physics.fields)

  • compute_structural_potential(G, alpha: float = 2.0) -> dict[int,float]
  • compute_phase_gradient(G) -> dict[int,float]
  • compute_phase_curvature(G) -> dict[int,float]
  • compute_k_phi_multiscale_variance(G, scales: tuple[int,...]) -> dict[int,float]
  • fit_k_phi_asymptotic_alpha(var_by_scale: dict[int,float]) -> dict
  • k_phi_multiscale_safety(G, scales=(1,2,3,5), alpha_hint=2.76, tolerance_factor=2.0, fit_min_r2=0.5) -> dict
  • estimate_coherence_length(G, coherence_key='coherence') -> float
  • fit_correlation_length_exponent(Is: array, xi_vals: array, I_c: float, min_distance=0.01) -> dict
  • measure_phase_symmetry(G) -> dict
  • path_integrated_gradient(G, path: list[int]) -> float

Each function documents parameters and return types inline in fields.py.


5. Validation and Safety Thresholds

Canonical telemetry thresholds (only the π phase-wrap bounds are genuine; the rest are empirical/heuristic):

  • Φ_s: maintain ΔΦ_s < 2.0 (escape threshold, empirical) — see AGENTS.md (U6)
  • |∇φ|: kinematic bound |∇φ| ≤ π (phase wrap); γ/π ≈ 0.1837 is only a HEURISTIC early-warning level (not derived), track spikes
  • K_φ: flag |K_φ| ≥ 2.8274 (= 0.9π, phase wrap — genuine) as hotspots; assess multiscale decay var(K_φ) ~ 1/r^α
  • ξ_C: monitor divergence around I_c; the ξ_C scale is set by the spectral gap (ξ_C ∝ 1/√λ₂)

Minimum tests (see tests/ and AGENTS.md):

  • Coherence monotonicity under IL
  • Dissonance-triggered bifurcation with handlers present
  • Resonance propagation increases phase synchrony
  • Silence preserves EPI
  • Mutation threshold crossing changes phase label
  • Multiscale nested EPIs maintain coherence
  • Seed reproducibility

6. Workflows and Tooling

  • Integrated study: benchmarks/integrated_force_regime_study.py (six-task harness)
  • Methods comparison: benchmarks/grammar_2_0_benchmarks.py and summaries
  • Plotting: benchmarks/plot_force_study_summaries.py → saves to results/plots/*.png
  • Notebook: notebooks/Force_Fields_Tetrad_Exploration.ipynb (end-to-end)
  • Static report: results/reports/Force_Fields_Tetrad_Exploration.html
  • VS Code tasks: .vscode/tasks.json
    • “Export TNFR tetrad HTML report”
    • “Generate force study plots”

Artifacts:

  • results/integrated_force_study_summary.json
  • results/field_methods_battery_summary.json
  • results/plots/*.png

7. Minimal Example

python
import networkx as nx
from tnfr.physics.fields import (
    compute_structural_potential,
    compute_phase_gradient,
    compute_phase_curvature,
    estimate_coherence_length,
)

G = nx.watts_strogatz_graph(60, k=4, p=0.2, seed=42)
# Initialize minimal telemetry
for n in G.nodes():
    G.nodes[n]['theta'] = 0.1 * (n/59.0)
    G.nodes[n]['delta_nfr'] = 0.1

phi = compute_structural_potential(G, alpha=2.0)
grad = compute_phase_gradient(G)
kphi = compute_phase_curvature(G)
xi = estimate_coherence_length(G, coherence_key='coherence')  # if provided

8. Governance and Traceability

  • Physics-first: all field definitions derive from nodal equation semantics
  • No ad-hoc mutations: fields are telemetry-only; EPI changes go through operators
  • Units and invariants preserved (see AGENTS.md invariants 1–6)
  • Canonical docs: this page + UNIFIED_GRAMMAR_RULES.md are the reference

9. Further Reading

  • AGENTS.md — Canonical invariants and field promotions (Φ_s, |∇φ|, K_φ, ξ_C)
  • UNIFIED_GRAMMAR_RULES.md — U1–U6 derivations and constraints
  • SHA_ALGEBRA_PHYSICS.md — Supporting mathematical apparatus

10. FAQ

Q1. What node attributes are required to compute each field?

  • Φ_s: requires delta_nfr or dnfr on nodes; uses graph distances.
  • |∇φ| and K_φ: require theta or phase on nodes (float in [0, 2π)).
  • ξ_C: optionally uses coherence on nodes; if absent, it estimates from delta_nfr via c_i = 1/(1+|ΔNFR_i|).

Q2. Why are phase differences wrapped? Can I just subtract angles?

  • Phases live on the circle. Direct subtraction misinterprets, e.g., 0 and 2π as far apart. We compute circular means (via unit vectors) and wrap differences to (−π, π] to preserve correct geometry.

Q3. How should I choose α in Φ_s?

  • α = 2.0 is canonical (inverse-square analog) and validated across topologies. Deviations are research-only; if you change α, document and justify the physics in your application.

Q4. Are the tetrad thresholds universal?

  • No. Only the π phase-wrap bounds are genuine and exact: |∇φ| ≤ π and |K_φ| < 0.9π ≈ 2.8274 (both phase derivatives are wrapped angles). The Φ_s bounds are empirical (no closed form), and |∇φ| < γ/π ≈ 0.1837 is a heuristic early-warning level, NOT a derived threshold (the measured sync-onset is ≈ 0.29 and σ-dependent). ξ_C is set by the spectral gap (ξ_C ∝ 1/√λ₂). Treat the non-π thresholds as heuristic safety guidance, not derived constants.

Q5. What graphs are supported? Weighted? Directed?

  • Implementations are designed for undirected, unweighted graphs. Φ_s currently uses unweighted shortest-path distances. If your graph is weighted or directed, pre-process to an appropriate undirected/unweighted view or extend the distance routine consistently with TNFR physics.

Q6. What happens if attributes are missing?

  • Functions fall back conservatively (e.g., 0.0 for empty neighborhoods) but you should initialize at least theta/phase and delta_nfr/dnfr. For ξ_C, if coherence is missing, it infers local coherence from ΔNFR magnitudes.

Q7. ξ_C returned NaN/inf. What does that mean?

  • Near criticality, an exponential fit may be ill-posed (flat or noisy C(r)). Re-run with more samples, verify coherence distribution, or widen the r-range. If the system is truly at/near I_c, very large ξ_C is expected; treat it as a warning for imminent system-wide reorganization.

Q8. How does the tetrad relate to C(t) and Si?

  • C(t) is a global coherence scalar; Si measures stable reorganization capacity. The tetrad provides complementary structure: Φ_s (global field), |∇φ| (local stress), K_φ (geometric confinement), ξ_C (spatial correlation scale). Use them together for a complete picture. Note: the primary C(t) = 1/(1 + mean|ΔNFR| + mean|dEPI|) is a global aggregate (its scale-invariant dispersion variant 1 − σ_ΔNFR/ΔNFR_max makes the blind spot explicit); |∇φ| often captures early local stress better.

Q9. Performance tips for large graphs?

  • Φ_s requires many distance evaluations; on large graphs, consider limiting to a radius, sampling source nodes, or caching all-pairs shortest paths if topology is static. |∇φ| and K_φ are O(E) and scale well. ξ_C can subsample pairs at each distance bin.

Q10. What should I do when safety flags trigger?

  • Apply stabilizers (IL, THOL), verify phase-compatibility before coupling (U3), reduce destabilizer intensity (OZ, ZHIR, VAL), and monitor ΔΦ_s, |∇φ|, and K_φ decay across scales. Ensure ν_f units remain in Hz_str and do not mutate EPI outside operators.

Q11. Reproducibility and randomness?

  • Set seeds (Python, NumPy) before generating telemetry or randomized structures. The same seed must yield identical trajectories and telemetry (Invariant #8).

Q12. Can I extend these fields or add new ones?

  • Yes, but only with physics-first justification. Derive from the nodal equation, preserve invariants, map to operators where applicable, and add tests and documentation. Experimental fields must be clearly labeled non-canonical until validated.

Q13. How do individual operators affect the tetrad?

  • Each operator produces a unique fingerprint across (Phi_s, |grad_phi|, K_phi, xi_C). Coupling (UM) modifies all four fields (strongest Phi_s at -73.7%); Silence (SHA) is tetrad-neutral; Coherence (IL) and Dissonance (OZ) share identical perturbation magnitudes despite opposite physics (IL-OZ symmetry). The complete causal chain is: Operator -> (vf, DNFR) -> dEPI/dt -> Tetrad -> (E, Q). See STRUCTURAL_OPERATORS.md S17 and example 37.

Appendix: Topological winding (Q) — complementary telemetry

While not part of the field tetrad, the topological winding number around a closed loop provides a complementary invariant for identifying phase defects and vortex-like structures:

Definition: Q = round( (1 / 2π) · Σ wrap(φ_{i+1} − φ_i) ) over a closed cycle.

  • Implementation: tnfr.physics.fields.compute_phase_winding(G, cycle_nodes)
  • Usage: helpful to distinguish plane-wave-like (Q≈0) from vortex-like (Q=±1) configurations in pattern studies.
  • Related initializations: tnfr.physics.patterns.apply_vortex, apply_plane_wave, apply_quark_triplet_cluster.

This metric is telemetry-only and preserves all canonical invariants.