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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: examples/02_physics_regimes/33_complex_field_unification.py

33_complex_field_unification.py

Example 33: Complex Field Unification (Psi = K_phi + i*J_phi).

Demonstrates the fundamental discovery that phase curvature K_phi and phase current J_phi are dual aspects of a single complex geometric field:

Psi = K_phi + i * J_phi

Key results shown:

  1. K_phi-J_phi anticorrelation: r ~ -0.854 to -0.997 across topologies
  2. Complex field Psi: magnitude, phase, polar decomposition
  3. Emergent derived fields: chirality (chi), symmetry breaking (S), coherence coupling (C)
  4. Tensor invariants: energy density (E), topological charge (Q)
  5. Energy decomposition: T (kinetic/transport) + V (potential/geometric)
  6. Action density and cross-sector coupling

Physics basis: The near-perfect anticorrelation r(K_phi, J_phi) implies that increasing phase curvature (confinement) suppresses phase current (transport). Static confinement and dynamic transport are dual aspects — they trade off within the unified complex field Psi. See: theory/EXTENDED_FIELDS_AND_DERIVED_QUANTITIES.md ss 2-3 See: theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 4-6

Source Code

python
"""Example 33: Complex Field Unification (Psi = K_phi + i*J_phi).

Demonstrates the fundamental discovery that phase curvature K_phi and
phase current J_phi are dual aspects of a single complex geometric field:

  Psi = K_phi + i * J_phi

Key results shown:
  1. K_phi-J_phi anticorrelation: r ~ -0.854 to -0.997 across topologies
  2. Complex field Psi: magnitude, phase, polar decomposition
  3. Emergent derived fields: chirality (chi), symmetry breaking (S),
     coherence coupling (C)
  4. Tensor invariants: energy density (E), topological charge (Q)
  5. Energy decomposition: T (kinetic/transport) + V (potential/geometric)
  6. Action density and cross-sector coupling

Physics basis:
  The near-perfect anticorrelation r(K_phi, J_phi) implies that
  increasing phase curvature (confinement) suppresses phase current
  (transport). Static confinement and dynamic transport are dual
  aspects — they trade off within the unified complex field Psi.
  See: theory/EXTENDED_FIELDS_AND_DERIVED_QUANTITIES.md ss 2-3
  See: theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 4-6
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.physics.extended import compute_dnfr_flux, compute_phase_current
from tnfr.physics.fields import (
    compute_complex_geometric_field_arrays,
    compute_emergent_fields,
    compute_phase_curvature,
    compute_phase_gradient,
    compute_structural_potential,
    compute_tensor_invariants,
    estimate_coherence_length,
)
from tnfr.physics.unified import (
    compute_chirality_field,
    compute_complex_geometric_field,
    compute_field_magnitude,
    compute_field_phase,
    compute_symmetry_breaking_field,
)


def _build_graph(n: int, topology: str, seed: int = 42) -> nx.Graph:
    """Build a TNFR-initialized graph of the given topology."""
    rng = np.random.default_rng(seed)
    if topology == "WS":
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)
    elif topology == "BA":
        G = nx.barabasi_albert_graph(n, 2, seed=seed)
    elif topology == "Grid":
        side = int(math.sqrt(n))
        G = nx.grid_2d_graph(side, side)
        mapping = {node: i for i, node in enumerate(G.nodes())}
        G = nx.relabel_nodes(G, mapping)
    elif topology == "Complete":
        G = nx.complete_graph(n)
    elif topology == "Ring":
        G = nx.cycle_graph(n)
    else:
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)

    inject_defaults(G)
    for node in G.nodes():
        G.nodes[node]["phase"] = rng.uniform(0, 2 * math.pi)
        G.nodes[node]["theta"] = G.nodes[node]["phase"]
        G.nodes[node]["delta_nfr"] = rng.uniform(-0.5, 0.5)
        G.nodes[node]["nu_f"] = rng.uniform(0.8, 1.2)
    return G


def _evolve_step(G: nx.Graph, dt: float = 0.05) -> None:
    """One diffusion step: phase alignment + DELTA_NFR smoothing."""
    for n in G.nodes():
        neighbors = list(G.neighbors(n))
        if neighbors:
            mean_phase = np.mean([G.nodes[nb]["phase"] for nb in neighbors])
            G.nodes[n]["phase"] += dt * (mean_phase - G.nodes[n]["phase"])
            G.nodes[n]["theta"] = G.nodes[n]["phase"]
            mean_dnfr = np.mean([G.nodes[nb]["delta_nfr"] for nb in neighbors])
            G.nodes[n]["delta_nfr"] += dt * (mean_dnfr - G.nodes[n]["delta_nfr"])


# ---------------------------------------------------------------------------
# 1. K_phi - J_phi anticorrelation
# ---------------------------------------------------------------------------


def demo_anticorrelation() -> None:
    """Verify strong anticorrelation between K_phi and J_phi."""
    print("=" * 65)
    print("  1. K_phi - J_phi ANTICORRELATION across Topologies")
    print("=" * 65)

    topologies = [
        ("WS (N=50)", "WS", 50),
        ("BA (N=50)", "BA", 50),
        ("Grid (7x7)", "Grid", 49),
        ("Ring (N=50)", "Ring", 50),
        ("Complete (N=15)", "Complete", 15),
    ]

    print(f"\n  Expected: r(K_phi, J_phi) in [-0.997, -0.854]")
    print(
        f"\n  {'Topology':<20}  {'r(K_phi, J_phi)':>16}  {'Mean |Psi|':>10}  {'Verdict':>10}"
    )
    print("  " + "-" * 62)

    for name, topo, n in topologies:
        G = _build_graph(n, topo)
        # Evolve a few steps for realistic field distributions
        for _ in range(10):
            _evolve_step(G)

        k_phi = compute_phase_curvature(G)
        j_phi = compute_phase_current(G)

        k_arr = np.array([k_phi[n] for n in sorted(G.nodes())])
        j_arr = np.array([j_phi[n] for n in sorted(G.nodes())])

        # Pearson correlation
        if np.std(k_arr) > 1e-10 and np.std(j_arr) > 1e-10:
            corr = np.corrcoef(k_arr, j_arr)[0, 1]
        else:
            corr = 0.0

        psi = compute_complex_geometric_field(G)
        mean_mag = np.mean([abs(v) for v in psi.values()])

        verdict = "STRONG" if corr < -0.7 else ("MODERATE" if corr < -0.3 else "WEAK")
        print(f"  {name:<20}  {corr:16.4f}  {mean_mag:10.4f}  {verdict:>10}")

    print(f"\n  Physical mechanism:")
    print(f"    Increasing K_phi (confinement) -> suppresses J_phi (transport)")
    print(f"    They are dual aspects of unified complex field Psi")


# ---------------------------------------------------------------------------
# 2. Complex field Psi decomposition
# ---------------------------------------------------------------------------


def demo_complex_field() -> None:
    """Show Psi = K_phi + i*J_phi decomposition."""
    print("\n" + "=" * 65)
    print("  2. COMPLEX GEOMETRIC FIELD  Psi = K_phi + i*J_phi")
    print("=" * 65)

    G = _build_graph(30, "WS")
    for _ in range(10):
        _evolve_step(G)

    psi = compute_complex_geometric_field(G)
    magnitudes = compute_field_magnitude(psi)
    phases = compute_field_phase(psi)

    nodes = sorted(G.nodes())[:10]  # show first 10

    print(f"\n  Node decomposition (first 10 nodes, WS N=30):")
    print(
        f"  {'Node':>6}  {'K_phi':>8}  {'J_phi':>8}  {'|Psi|':>8}  {'arg(Psi)':>10}  {'Psi':>20}"
    )
    print("  " + "-" * 68)

    k_phi = compute_phase_curvature(G)
    j_phi = compute_phase_current(G)

    for n in nodes:
        print(
            f"  {n:6d}  {k_phi[n]:8.4f}  {j_phi[n]:8.4f}  {magnitudes[n]:8.4f}  "
            f"{math.degrees(phases[n]):10.2f} deg  {psi[n].real:+.4f}{psi[n].imag:+.4f}j"
        )

    # Array version
    arrays = compute_complex_geometric_field_arrays(G)
    print(f"\n  Array API summary:")
    print(f"    Psi array shape: ({len(arrays['psi_real'])},)")
    print(f"    Mean |Psi|: {np.mean(arrays['psi_magnitude']):.4f}")
    print(f"    Std |Psi|:  {np.std(arrays['psi_magnitude']):.4f}")
    print(f"    Mean arg(Psi): {np.mean(arrays['psi_phase']):.4f} rad")


# ---------------------------------------------------------------------------
# 3. Emergent derived fields
# ---------------------------------------------------------------------------


def demo_emergent_fields() -> None:
    """Compute and interpret chirality, symmetry breaking, coherence coupling."""
    print("\n" + "=" * 65)
    print("  3. EMERGENT DERIVED FIELDS")
    print("=" * 65)

    G = _build_graph(40, "WS")
    for _ in range(15):
        _evolve_step(G)

    chi = compute_chirality_field(G)
    sym_break = compute_symmetry_breaking_field(G)
    emergent = compute_emergent_fields(G)

    chi_arr = np.array(list(chi.values()))
    sb_arr = np.array(list(sym_break.values()))

    print(f"\n  a) Chirality  chi = |grad_phi|*K_phi - J_phi*J_DELTA_NFR")
    print(f"     Detects: Structural handedness / broken parity")
    print(f"     Mean: {np.mean(chi_arr):.6f}")
    print(f"     Std:  {np.std(chi_arr):.6f}")
    print(f"     |chi| > 0 signals asymmetry between local and transport sectors")

    print(
        f"\n  b) Symmetry Breaking  S = (|grad_phi|^2 - K_phi^2) + (J_phi^2 - J_DELTA_NFR^2)"
    )
    print(f"     Order parameter for phase transitions")
    print(f"     Mean: {np.mean(sb_arr):.6f}  (S ~ 0 = balanced, |S| >> 0 = broken)")
    print(f"     Std:  {np.std(sb_arr):.6f}")

    print(f"\n  c) Coherence Coupling  C = Phi_s * |Psi|")
    print(f"     Multi-scale connector: global potential <-> local geometry")
    cc_arr = np.array(emergent.get("coherence_coupling", [0.0]))
    if len(cc_arr) > 1:
        print(f"     Mean: {np.mean(cc_arr):.6f}")
        print(f"     Std:  {np.std(cc_arr):.6f}")

    # Compare: high-coherence vs low-coherence node groups
    phi_s = compute_structural_potential(G)
    phi_s_arr = np.array([phi_s[n] for n in sorted(G.nodes())])
    median_phi_s = np.median(np.abs(phi_s_arr))

    high_phi_s = [n for n in G.nodes() if abs(phi_s[n]) >= median_phi_s]
    low_phi_s = [n for n in G.nodes() if abs(phi_s[n]) < median_phi_s]

    chi_high = np.mean([abs(chi[n]) for n in high_phi_s]) if high_phi_s else 0
    chi_low = np.mean([abs(chi[n]) for n in low_phi_s]) if low_phi_s else 0
    print(f"\n  Chirality comparison by Phi_s level:")
    print(f"    High |Phi_s| nodes (n={len(high_phi_s)}): mean |chi| = {chi_high:.6f}")
    print(f"    Low  |Phi_s| nodes (n={len(low_phi_s)}):  mean |chi| = {chi_low:.6f}")


# ---------------------------------------------------------------------------
# 4. Tensor invariants
# ---------------------------------------------------------------------------


def demo_tensor_invariants() -> None:
    """Compute energy density, topological charge, and charge density."""
    print("\n" + "=" * 65)
    print("  4. TENSOR INVARIANTS — Gauge-Invariant Quantities")
    print("=" * 65)

    topologies = [
        ("WS (N=40)", "WS", 40),
        ("BA (N=40)", "BA", 40),
        ("Grid (6x6)", "Grid", 36),
    ]

    print(
        f"\n  {'Topology':<16}  {'Mean E':>10}  {'Std E':>8}  "
        f"{'Mean Q':>10}  {'Mean rho':>10}"
    )
    print("  " + "-" * 60)

    for name, topo, n in topologies:
        G = _build_graph(n, topo)
        for _ in range(10):
            _evolve_step(G)

        inv = compute_tensor_invariants(G)

        e_arr = np.array(inv.get("energy_density", [0.0]))
        q_arr = np.array(inv.get("topological_charge", [0.0]))
        rho_arr = np.array(inv.get("charge_density", [0.0]))

        print(
            f"  {name:<16}  {np.mean(e_arr):10.4f}  {np.std(e_arr):8.4f}  "
            f"{np.mean(q_arr):10.6f}  {np.mean(rho_arr):10.4f}"
        )

    # Detailed breakdown for one topology
    G = _build_graph(40, "WS")
    for _ in range(10):
        _evolve_step(G)

    phi_s = compute_structural_potential(G)
    grad_phi = compute_phase_gradient(G)
    k_phi = compute_phase_curvature(G)
    j_phi = compute_phase_current(G)
    j_dnfr = compute_dnfr_flux(G)

    nodes_sorted = sorted(G.nodes())
    ps = np.array([phi_s[n] for n in nodes_sorted])
    gp = np.array([grad_phi[n] for n in nodes_sorted])
    kp = np.array([k_phi[n] for n in nodes_sorted])
    jp = np.array([j_phi[n] for n in nodes_sorted])
    jd = np.array([j_dnfr[n] for n in nodes_sorted])

    # Energy decomposition: E = T + V
    T = 0.5 * np.sum(jp**2 + jd**2)  # kinetic (transport)
    V = 0.5 * np.sum(ps**2 + gp**2 + kp**2)  # potential (geometric)
    E_total = T + V
    print(f"\n  Energy decomposition (WS N=40):")
    print(f"    E_total = {E_total:.4f}")
    print(f"    T (kinetic/transport) = {T:.4f}  ({T/E_total*100:.1f}%)")
    print(f"    V (potential/geometric) = {V:.4f}  ({V/E_total*100:.1f}%)")

    # Action density
    action = ps * gp + kp * jp + gp * jd
    print(
        f"\n  Action density A = Phi_s*|grad_phi| + K_phi*J_phi + |grad_phi|*J_DELTA_NFR:"
    )
    print(f"    Mean A: {np.mean(action):.6f}")
    print(f"    Sum A:  {np.sum(action):.4f}")

    # Topological charge conservation check
    Q_total = np.sum(gp * jp - kp * jd)
    print(f"\n  Topological charge Q = sum(|grad_phi|*J_phi - K_phi*J_DELTA_NFR):")
    print(f"    Q_total = {Q_total:.6f}")
    print(f"    (Should be approximately conserved under grammar-compliant evolution)")


# ---------------------------------------------------------------------------
# 5. Evolution tracking of unified fields
# ---------------------------------------------------------------------------


def demo_evolution_tracking() -> None:
    """Track Psi magnitude and emergent fields during evolution."""
    print("\n" + "=" * 65)
    print("  5. EVOLUTION TRACKING — Unified Field Dynamics")
    print("=" * 65)

    G = _build_graph(40, "WS")
    n_steps = 30

    print(f"\n  Tracking WS (N=40) over {n_steps} diffusion steps:")
    print(
        f"  {'Step':>6}  {'Mean|Psi|':>10}  {'Mean|chi|':>10}  "
        f"{'Mean|S|':>10}  {'E_total':>10}  {'Q_total':>10}"
    )
    print("  " + "-" * 62)

    for step in range(n_steps + 1):
        if step % 5 == 0:
            psi = compute_complex_geometric_field(G)
            chi = compute_chirality_field(G)
            sym = compute_symmetry_breaking_field(G)

            mean_psi = np.mean([abs(v) for v in psi.values()])
            mean_chi = np.mean([abs(v) for v in chi.values()])
            mean_sym = np.mean([abs(v) for v in sym.values()])

            inv = compute_tensor_invariants(G)
            e_total = np.sum(inv.get("energy_density", [0.0]))
            q_total = np.sum(inv.get("topological_charge", [0.0]))

            print(
                f"  {step:6d}  {mean_psi:10.4f}  {mean_chi:10.6f}  "
                f"{mean_sym:10.6f}  {e_total:10.4f}  {q_total:10.6f}"
            )

        _evolve_step(G, dt=0.1)

    print(f"\n  Expected behavior:")
    print(f"    |Psi| decreases as network synchronizes (K_phi, J_phi -> 0)")
    print(f"    |chi| decreases (symmetry restoration)")
    print(f"    |S| decreases (sector balance improves)")
    print(f"    E decreases (Lyapunov stability)")
    print(f"    Q approximately conserved (topological invariant)")


# ---------------------------------------------------------------------------
# Main
# ---------------------------------------------------------------------------


def main() -> None:
    print()
    print("*" * 65)
    print("  TNFR Example 33: Complex Field Unification")
    print("  Psi = K_phi + i * J_phi")
    print("  Theory: EXTENDED_FIELDS_AND_DERIVED_QUANTITIES.md ss 2-3")
    print("*" * 65)

    demo_anticorrelation()
    demo_complex_field()
    demo_emergent_fields()
    demo_tensor_invariants()
    demo_evolution_tracking()

    print("\n" + "=" * 65)
    print("  SUMMARY")
    print("=" * 65)
    print(
        f"""
  Complex Geometric Field Psi = K_phi + i * J_phi unifies:
    Real part (K_phi):  Static geometric confinement
    Imaginary part (J_phi):  Dynamic transport flow

  Anticorrelation r(K_phi, J_phi) ~ -0.85 to -0.997
    -> Confinement and transport are dual aspects

  Emergent fields from Psi:
    Chirality chi:       Structural handedness detector
    Symmetry Breaking S: Phase transition order parameter
    Coherence Coupling C: Multi-scale connector (Phi_s * |Psi|)

  Tensor invariants:
    Energy density E:    Gauge-invariant total energy
    Topological charge Q: Conserved under grammar evolution
    Action density A:    Cross-sector coupling measure

  These six downstream fields are not independent: the precise
  generating structure (example 108) shows they are all generated by
  the scalar Phi_s and two complex fields Psi = K_phi + i*J_phi and
  Omega = |grad phi| + i*J_DNFR -- i.e. 6 downstream fields = 5 reals,
  no information loss.
"""
    )


if __name__ == "__main__":
    main()