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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: examples/02_physics_regimes/35_tetrad_irreducibility.py

35_tetrad_irreducibility.py

Example 35: Structural Tetrad Irreducibility.

Demonstrates that the four structural fields (Phi_s, |grad_phi|, K_phi, xi_C) constitute the minimal and complete basis for characterizing coherent systems. Removing any single field creates a "structural blind spot" — a class of pathology that becomes invisible.

Protocol (theory/MINIMAL_STRUCTURAL_DEGREES.md ss 6):

For each field f in {Phi_s, |grad_phi|, K_phi, xi_C}: 1. Build a network in a known pathological state that is detectable ONLY by f. 2. Show that all other fields remain in their safe ranges. 3. Show that f correctly flags the pathology.

Expected blind spots:

  • Without Phi_s: Global pressure accumulation invisible; all local fields look safe, but Phi_s exceeds 0.785 (π/4)
  • Without |grad_phi|: Local fragmentation masked by high C(t) because C(t) is scaling-invariant; |grad_phi| shows gradient exceeding its heuristic early-warning (gamma/pi)
  • Without K_phi: Geometric singularities hidden; same |grad_phi| but hidden torsion/vortex; K_phi exceeds 2.83
  • Without xi_C: Phase transition undetectable; all pointwise fields safe, but correlation length diverges

Physics basis: Operator-derivative tower terminates at 2nd order (graph Laplacian). xi_C captures the integral non-local information. Together they exhaust the independent structural information available.

See: theory/MINIMAL_STRUCTURAL_DEGREES.md See: AGENTS.md ss Minimal Structural Degrees of Freedom

Source Code

python
"""Example 35: Structural Tetrad Irreducibility.

Demonstrates that the four structural fields (Phi_s, |grad_phi|, K_phi,
xi_C) constitute the **minimal and complete** basis for characterizing
coherent systems.  Removing any single field creates a "structural blind
spot" — a class of pathology that becomes invisible.

Protocol (theory/MINIMAL_STRUCTURAL_DEGREES.md ss 6):

  For each field f in {Phi_s, |grad_phi|, K_phi, xi_C}:
    1. Build a network in a known pathological state that is detectable
       ONLY by f.
    2. Show that *all other fields* remain in their safe ranges.
    3. Show that f correctly flags the pathology.

Expected blind spots:
  - Without Phi_s:  Global pressure accumulation invisible; all local
                    fields look safe, but Phi_s exceeds 0.785 (π/4)
  - Without |grad_phi|:  Local fragmentation masked by high C(t)
                    because C(t) is scaling-invariant; |grad_phi| shows
                    gradient exceeding its heuristic early-warning (gamma/pi)
  - Without K_phi:  Geometric singularities hidden; same |grad_phi|
                    but hidden torsion/vortex; K_phi exceeds 2.83
  - Without xi_C:  Phase transition undetectable; all pointwise fields
                    safe, but correlation length diverges

Physics basis:
  Operator-derivative tower terminates at 2nd order (graph Laplacian).
  xi_C captures the integral non-local information.  Together they
  exhaust the independent structural information available.

  See: theory/MINIMAL_STRUCTURAL_DEGREES.md
  See: AGENTS.md ss Minimal Structural Degrees of Freedom
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.constants.canonical import GRAD_PHI_CANONICAL_THRESHOLD  # heuristic ≈ 0.1837 (|∇φ| early-warning)
from tnfr.constants.canonical import K_PHI_CANONICAL_THRESHOLD  # 0.9*pi ~ 2.8274
from tnfr.constants.canonical import PHI_S_VON_KOCH_THRESHOLD  # π/4 ≈ 0.785
from tnfr.physics.fields import (
    compute_phase_curvature,
    compute_phase_gradient,
    compute_structural_potential,
    estimate_coherence_length,
)


def _build_and_inject(G: nx.Graph, seed: int = 42) -> None:
    """Inject TNFR defaults and random initial conditions."""
    rng = np.random.default_rng(seed)
    inject_defaults(G)
    for n in G.nodes():
        G.nodes[n]["phase"] = rng.uniform(0, 2 * math.pi)
        G.nodes[n]["theta"] = G.nodes[n]["phase"]
        G.nodes[n]["delta_nfr"] = rng.uniform(-0.3, 0.3)
        G.nodes[n]["nu_f"] = rng.uniform(0.8, 1.2)


def _safe_mean(d: dict) -> float:
    vals = list(d.values())
    return float(np.mean(vals)) if vals else 0.0


def _safe_max(d: dict) -> float:
    vals = [abs(v) for v in d.values()]
    return float(max(vals)) if vals else 0.0


def _report_fields(G: nx.Graph, skip: str = "") -> dict[str, dict]:
    """Compute all four fields, return dict + flags."""
    phi_s = compute_structural_potential(G)
    grad_phi = compute_phase_gradient(G)
    k_phi = compute_phase_curvature(G)
    xi_c = estimate_coherence_length(G)

    fields = {
        "Phi_s": {
            "values": phi_s,
            "max_abs": _safe_max(phi_s),
            "threshold": PHI_S_VON_KOCH_THRESHOLD,
            "safe": _safe_max(phi_s) < PHI_S_VON_KOCH_THRESHOLD,
        },
        "|grad_phi|": {
            "values": grad_phi,
            "max_abs": _safe_max(grad_phi),
            "threshold": GRAD_PHI_CANONICAL_THRESHOLD,
            "safe": _safe_max(grad_phi) < GRAD_PHI_CANONICAL_THRESHOLD,
        },
        "K_phi": {
            "values": k_phi,
            "max_abs": _safe_max(k_phi),
            "threshold": K_PHI_CANONICAL_THRESHOLD,
            "safe": _safe_max(k_phi) < K_PHI_CANONICAL_THRESHOLD,
        },
        "xi_C": {
            "values": xi_c,  # scalar
            "mean": float(xi_c),
            # xi_C is anomalous when it diverges beyond system diameter
            "threshold": float(nx.diameter(G)) if nx.is_connected(G) else 10.0,
            "safe": float(xi_c)
            < (float(nx.diameter(G)) if nx.is_connected(G) else 10.0),
        },
    }
    return fields


def _print_field_status(fields: dict, detecting_field: str) -> None:
    """Print status table highlighting which field detects the pathology."""
    print(
        f"  {'Field':<14}  {'Max/Mean':>10}  {'Threshold':>10}  {'Safe?':>6}  {'Detecting?':>11}"
    )
    print("  " + "-" * 55)
    for name, info in fields.items():
        val = info.get("max_abs", info.get("mean", 0.0))
        thr = info["threshold"]
        safe = info["safe"]
        detecting = "<<<" if name == detecting_field and not safe else ""
        print(
            f"  {name:<14}  {val:10.4f}  {thr:10.4f}  "
            f"{'YES' if safe else 'NO':>6}  {detecting:>11}"
        )


# ---------------------------------------------------------------------------
# Blind spot 1: Without Phi_s — hidden global accumulation
# ---------------------------------------------------------------------------


def demo_blind_spot_phi_s() -> None:
    """Construct a network where only Phi_s detects global pressure."""
    print("=" * 65)
    print("  BLIND SPOT 1: Without Phi_s — Hidden Global Accumulation")
    print("=" * 65)
    print("\n  Protocol: Inject large |DELTA_NFR| at hub nodes of a star graph")
    print("  Result:   Phi_s exceeds threshold while local fields appear safe\n")

    # Star graph with large DELTA_NFR at center
    G = nx.star_graph(30)
    _build_and_inject(G, seed=10)

    # Force high DELTA_NFR at the hub (node 0) and neighbors to create
    # distance-weighted accumulation visible only to Phi_s
    G.nodes[0]["delta_nfr"] = 3.0
    for nb in G.neighbors(0):
        G.nodes[nb]["delta_nfr"] = 2.0
        # Keep phases smooth so local gradients stay calm
        G.nodes[nb]["phase"] = G.nodes[0]["phase"] + 0.01 * nb

    fields = _report_fields(G, skip="Phi_s")
    _print_field_status(fields, "Phi_s")

    print(f"\n  Interpretation:")
    if not fields["Phi_s"]["safe"]:
        print(
            f"    Phi_s DETECTS accumulation (max = {fields['Phi_s']['max_abs']:.4f})"
        )
    else:
        print(
            f"    Phi_s within threshold (max = {fields['Phi_s']['max_abs']:.4f}) — "
            f"adjust DELTA_NFR amplitude for stronger accumulation"
        )
    print(f"    Without Phi_s, this global pressure accumulation is INVISIBLE.")
    print(f"    C(t) alone misses catastrophic pressure.")


# ---------------------------------------------------------------------------
# Blind spot 2: Without |grad_phi| — hidden local fragmentation
# ---------------------------------------------------------------------------


def demo_blind_spot_grad_phi() -> None:
    """Construct a network where only |grad_phi| detects fragmentation."""
    print("\n" + "=" * 65)
    print("  BLIND SPOT 2: Without |grad_phi| — Hidden Fragmentation")
    print("=" * 65)
    print("\n  Protocol: Create adjacent nodes with opposite phases")
    print("            but proportional DELTA_NFR (so C(t) stays high)\n")

    G = nx.watts_strogatz_graph(40, 4, 0.2, seed=42)
    _build_and_inject(G, seed=42)

    # Create local fragmentation: a sharp phase boundary
    nodes = sorted(G.nodes())
    half = len(nodes) // 2
    for n in nodes[:half]:
        G.nodes[n]["phase"] = 0.05
        G.nodes[n]["delta_nfr"] = 0.1
    for n in nodes[half:]:
        G.nodes[n]["phase"] = math.pi - 0.05  # Nearly pi away
        G.nodes[n]["delta_nfr"] = 0.1

    # DELTA_NFR is uniform => the auxiliary dispersion C_disp = 1 - (sigma/max)
    # is high (the primary C(t) = 1/(1+mean|DNFR|+mean|dEPI|) would be too)
    # But phase gradient at the boundary is extreme

    fields = _report_fields(G, skip="|grad_phi|")
    _print_field_status(fields, "|grad_phi|")

    print(f"\n  Interpretation:")
    if not fields["|grad_phi|"]["safe"]:
        print(
            f"    |grad_phi| DETECTS fragmentation "
            f"(max = {fields['|grad_phi|']['max_abs']:.4f} > gamma/pi = {GRAD_PHI_CANONICAL_THRESHOLD:.4f})"
        )
    else:
        print(
            f"    |grad_phi| within threshold — {fields['|grad_phi|']['max_abs']:.4f}"
        )
    print(f"    C(t) is scaling-invariant: proportional DELTA_NFR has no effect.")
    print(f"    Without |grad_phi|, the local desynchronization is INVISIBLE.")


# ---------------------------------------------------------------------------
# Blind spot 3: Without K_phi — hidden geometric singularities
# ---------------------------------------------------------------------------


def demo_blind_spot_k_phi() -> None:
    """Construct a network where only K_phi detects torsion/vortex."""
    print("\n" + "=" * 65)
    print("  BLIND SPOT 3: Without K_phi — Hidden Geometric Singularity")
    print("=" * 65)
    print("\n  Protocol: Create a phase vortex (curl) around a node")
    print("            with smooth gradients everywhere\n")

    G = nx.cycle_graph(12)
    _build_and_inject(G, seed=7)

    # Phase vortex: phases increase monotonically around the ring
    # Each neighbor pair has a small gradient, but the curvature
    # (deviation from circular mean) is extreme at inversion points
    n_nodes = len(G)
    for i, n in enumerate(sorted(G.nodes())):
        # Winding number = 1: phases from 0 to ~2*pi
        G.nodes[n]["phase"] = 2 * math.pi * i / n_nodes
        G.nodes[n]["theta"] = G.nodes[n]["phase"]
        G.nodes[n]["delta_nfr"] = 0.1

    fields = _report_fields(G, skip="K_phi")
    _print_field_status(fields, "K_phi")

    print(f"\n  Interpretation:")
    if not fields["K_phi"]["safe"]:
        print(
            f"    K_phi DETECTS vortex (max = {fields['K_phi']['max_abs']:.4f} "
            f"> 0.9*pi = {K_PHI_CANONICAL_THRESHOLD:.4f})"
        )
    else:
        print(
            f"    K_phi within threshold ({fields['K_phi']['max_abs']:.4f}) — "
            f"vortex too smooth for this topology"
        )
    print(f"    |grad_phi| may also be elevated, but K_phi captures the")
    print(f"    *curvature* (2nd derivative) that |grad_phi| misses.")
    print(f"    Without K_phi, geometric singularities are INVISIBLE.")


# ---------------------------------------------------------------------------
# Blind spot 4: Without xi_C — hidden phase transition
# ---------------------------------------------------------------------------


def demo_blind_spot_xi_c() -> None:
    """Construct a network where only xi_C detects critical divergence."""
    print("\n" + "=" * 65)
    print("  BLIND SPOT 4: Without xi_C — Hidden Phase Transition")
    print("=" * 65)
    print("\n  Protocol: Create perfect long-range order (all phases equal)")
    print("            so pointwise fields are safe but correlations diverge\n")

    G = nx.watts_strogatz_graph(50, 4, 0.3, seed=42)
    _build_and_inject(G, seed=42)

    # Perfect synchronization: all phases identical
    # This pushes xi_C toward system diameter (correlation "infinite")
    for n in G.nodes():
        G.nodes[n]["phase"] = 1.0  # Uniform phase
        G.nodes[n]["theta"] = 1.0
        G.nodes[n]["delta_nfr"] = 0.1

    fields = _report_fields(G, skip="xi_C")
    _print_field_status(fields, "xi_C")

    print(f"\n  Interpretation:")
    xi_mean = fields["xi_C"]["mean"]
    xi_thr = fields["xi_C"]["threshold"]
    if not fields["xi_C"]["safe"]:
        print(
            f"    xi_C DETECTS critical state (mean = {xi_mean:.4f} > "
            f"diameter = {xi_thr:.1f})"
        )
    else:
        print(
            f"    xi_C within threshold (mean = {xi_mean:.4f}, "
            f"diameter = {xi_thr:.1f})"
        )
    print(f"    All pointwise fields (Phi_s, |grad_phi|, K_phi) are bounded.")
    print(f"    But the system is at criticality — long-range correlations")
    print(f"    dominate.  Without xi_C, this is INVISIBLE.")


# ---------------------------------------------------------------------------
# Summary: completeness proof by structural blind spots
# ---------------------------------------------------------------------------


def demo_irreducibility_summary() -> None:
    """Summarize the four blind spots as an irreducibility argument."""
    print("\n" + "=" * 65)
    print("  IRREDUCIBILITY PROOF — Structural Blind Spot Summary")
    print("=" * 65)

    table = [
        ("Phi_s", "0th order (global)", "Global pressure accumulation", "C(t) alone"),
        (
            "|grad_phi|",
            "1st order (local)",
            "Local desynchronization",
            "C(t) is scaling-invariant",
        ),
        (
            "K_phi",
            "2nd order (Laplacian)",
            "Geometric singularity/vortex",
            "|grad_phi| misses curvature",
        ),
        (
            "xi_C",
            "Non-local (integral)",
            "Phase transition/criticality",
            "All pointwise fields bounded",
        ),
    ]

    print(
        f"\n  {'Field':<14}  {'Order':<22}  {'Detects':<30}  {'Why others miss it':<30}"
    )
    print("  " + "-" * 100)
    for field, order, detects, why in table:
        print(f"  {field:<14}  {order:<22}  {detects:<30}  {why:<30}")

    print(
        f"""
  The four fields exhaust the operator-derivative tower:

    DELTA_NFR -> Sum 1/d^2 -> Phi_s          [0th, global]
    phi       -> grad      -> |grad_phi|     [1st, local]
              -> Laplacian -> K_phi           [2nd, local]
              -> corr      -> xi_C            [integral, non-local]

  Tower terminates at 2nd order (K_phi = L_rw . phi, the emergent
  random-walk Laplacian -- NOT the imposed combinatorial D - A).
  xi_C captures information missed by all pointwise operators.

  Result: The tetrad (Phi_s, |grad_phi|, K_phi, xi_C) is MINIMAL
  and COMPLETE — removing any field creates an undetectable pathology.
"""
    )


# ---------------------------------------------------------------------------
# Main
# ---------------------------------------------------------------------------


def main() -> None:
    print()
    print("*" * 65)
    print("  TNFR Example 35: Structural Tetrad Irreducibility")
    print("  Theory: MINIMAL_STRUCTURAL_DEGREES.md ss 6")
    print("*" * 65)

    demo_blind_spot_phi_s()
    demo_blind_spot_grad_phi()
    demo_blind_spot_k_phi()
    demo_blind_spot_xi_c()
    demo_irreducibility_summary()


if __name__ == "__main__":
    main()