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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: examples/02_physics_regimes/36_grammar_violation_detector.py

36_grammar_violation_detector.py

Example 36: Grammar Violation Detector via Conservation Residuals.

Demonstrates real-time detection and classification of grammar violations through conservation residuals. When operator sequences violate U1-U6, the structural conservation law produces non-zero source terms:

d(rho)/dt + div(J) = S_grammar where S != 0 iff grammar violated

This detector uses conservation residuals to classify violations:

  • U2 breach (convergence failure): elevated RMS residuals
  • U3 breach (phase incompatibility): localized max residual spikes
  • U6 breach (confinement): charge drift exceeds the U6 Phi_s bound (~1.571)

Protocol (theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 12):

  1. Run grammar-compliant sequence -> measure baseline residuals
  2. Introduce intentional violations -> measure elevated residuals
  3. Classify violation type from residual signature
  4. Quantify severity via grammar violation index (GVI)

Physics basis: Grammar symmetry (U1-U6) => S_grammar = 0 (conservation) Breaking any grammar rule => S_grammar != 0 (detectable residual) Each violation type produces a distinctive residual signature.

See: theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 12 See: src/tnfr/physics/conservation.py::detect_grammar_violations_from_conservation

Source Code

python
"""Example 36: Grammar Violation Detector via Conservation Residuals.

Demonstrates real-time detection and classification of grammar violations
through conservation residuals.  When operator sequences violate U1-U6,
the structural conservation law produces non-zero source terms:

  d(rho)/dt + div(J) = S_grammar   where S != 0 iff grammar violated

This detector uses conservation residuals to classify violations:
  - U2 breach (convergence failure): elevated RMS residuals
  - U3 breach (phase incompatibility): localized max residual spikes
  - U6 breach (confinement): charge drift exceeds the U6 Phi_s bound (~1.571)

Protocol (theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 12):
  1. Run grammar-compliant sequence -> measure baseline residuals
  2. Introduce intentional violations -> measure elevated residuals
  3. Classify violation type from residual signature
  4. Quantify severity via grammar violation index (GVI)

Physics basis:
  Grammar symmetry (U1-U6) => S_grammar = 0 (conservation)
  Breaking any grammar rule => S_grammar != 0 (detectable residual)
  Each violation type produces a distinctive residual signature.

  See: theory/STRUCTURAL_CONSERVATION_THEOREM.md ss 12
  See: src/tnfr/physics/conservation.py::detect_grammar_violations_from_conservation
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.physics.conservation import (
    ConservationTracker,
    capture_conservation_snapshot,
    compute_noether_charge,
    detect_grammar_violations_from_conservation,
    verify_conservation_balance,
)
from tnfr.physics.fields import (
    compute_phase_curvature,
    compute_phase_gradient,
    compute_structural_potential,
)


def _build_graph(n: int = 40, seed: int = 42) -> nx.Graph:
    """Build a standard WS graph with TNFR defaults."""
    rng = np.random.default_rng(seed)
    G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)
    inject_defaults(G)
    for node in G.nodes():
        G.nodes[node]["phase"] = rng.uniform(0, 2 * math.pi)
        G.nodes[node]["theta"] = G.nodes[node]["phase"]
        G.nodes[node]["delta_nfr"] = rng.uniform(-0.3, 0.3)
        G.nodes[node]["nu_f"] = rng.uniform(0.8, 1.2)
    return G


def _evolve_compliant(G: nx.Graph, dt: float = 0.05) -> None:
    """Grammar-compliant IL-like diffusion step."""
    for n in G.nodes():
        neighbors = list(G.neighbors(n))
        if neighbors:
            mean_phase = np.mean([G.nodes[nb]["phase"] for nb in neighbors])
            G.nodes[n]["phase"] += dt * (mean_phase - G.nodes[n]["phase"])
            G.nodes[n]["theta"] = G.nodes[n]["phase"]
            mean_dnfr = np.mean([G.nodes[nb]["delta_nfr"] for nb in neighbors])
            G.nodes[n]["delta_nfr"] += dt * (mean_dnfr - G.nodes[n]["delta_nfr"])


def _inject_u2_violation(G: nx.Graph) -> None:
    """Simulate U2 (convergence) breach: unbounded DELTA_NFR growth."""
    for n in G.nodes():
        G.nodes[n]["delta_nfr"] *= 5.0  # Amplify without stabilizer


def _inject_u3_violation(G: nx.Graph) -> None:
    """Simulate U3 (phase incompatibility) breach: force antiphase coupling."""
    nodes = sorted(G.nodes())
    for i, n in enumerate(nodes):
        if i % 2 == 0:
            G.nodes[n]["phase"] = 0.0
        else:
            G.nodes[n]["phase"] = math.pi  # Antiphase


def _inject_u6_violation(G: nx.Graph) -> None:
    """Simulate U6 (confinement) breach: explosive DELTA_NFR at hub."""
    # Inject extreme DELTA_NFR at highest-degree node
    hub = max(G.nodes(), key=lambda n: G.degree(n))
    G.nodes[hub]["delta_nfr"] = 20.0
    for nb in G.neighbors(hub):
        G.nodes[nb]["delta_nfr"] = 10.0


# ---------------------------------------------------------------------------
# 1. Baseline: grammar-compliant evolution
# ---------------------------------------------------------------------------


def demo_baseline() -> dict:
    """Measure conservation residuals under compliant evolution."""
    print("=" * 65)
    print("  1. BASELINE — Grammar-Compliant Evolution")
    print("=" * 65)

    G = _build_graph()
    snap_before = capture_conservation_snapshot(G)

    for _ in range(10):
        _evolve_compliant(G)

    snap_after = capture_conservation_snapshot(G)
    balance = verify_conservation_balance(snap_before, snap_after, dt=10 * 0.05)
    violations = detect_grammar_violations_from_conservation(balance)

    print(f"\n  WS (N=40), 10 IL-like steps")
    print(f"    Conservation quality: {balance.conservation_quality:.4f}")
    print(f"    RMS residual:        {balance.rms_residual:.6f}")
    print(f"    Max residual:        {balance.max_residual:.6f}")
    print(f"    Charge drift:        {balance.charge_drift:.6f}")
    print(f"    GVI:                 {balance.grammar_violation_index:.6f}")
    print(f"    Violations detected: {violations['violations_detected']}")
    print(f"    Violation types:     {violations['violation_types']}")
    print(f"    Severity:            {violations['severity']:.4f}")
    print(f"\n  Expected: No violations, low residuals (S_grammar ~ 0)")

    return {
        "quality": balance.conservation_quality,
        "rms": balance.rms_residual,
        "max": balance.max_residual,
        "drift": balance.charge_drift,
    }


# ---------------------------------------------------------------------------
# 2. U2 violation: convergence failure
# ---------------------------------------------------------------------------


def demo_u2_violation(baseline: dict) -> None:
    """Detect U2 (convergence) violation from residuals."""
    print("\n" + "=" * 65)
    print("  2. U2 VIOLATION — Convergence Failure (Destabilizer w/o Stabilizer)")
    print("=" * 65)

    G = _build_graph()
    snap_before = capture_conservation_snapshot(G)

    # Comply for a few steps, then violate U2
    for _ in range(5):
        _evolve_compliant(G)
    _inject_u2_violation(G)  # Amplify DELTA_NFR without stabilizer
    for _ in range(5):
        _evolve_compliant(G)

    snap_after = capture_conservation_snapshot(G)
    balance = verify_conservation_balance(snap_before, snap_after, dt=10 * 0.05)
    violations = detect_grammar_violations_from_conservation(balance)

    print(f"\n  Protocol: 5 compliant steps -> U2 breach -> 5 more steps")
    print(
        f"    Conservation quality: {balance.conservation_quality:.4f}  "
        f"(baseline: {baseline['quality']:.4f})"
    )
    print(
        f"    RMS residual:        {balance.rms_residual:.6f}  "
        f"(baseline: {baseline['rms']:.6f})"
    )
    print(
        f"    Max residual:        {balance.max_residual:.6f}  "
        f"(baseline: {baseline['max']:.6f})"
    )
    print(
        f"    Charge drift:        {balance.charge_drift:.6f}  "
        f"(baseline: {baseline['drift']:.6f})"
    )
    print(f"    GVI:                 {balance.grammar_violation_index:.6f}")
    print(f"    Violations detected: {violations['violations_detected']}")
    print(f"    Violation types:     {violations['violation_types']}")
    print(f"    Severity:            {violations['severity']:.4f}")
    print(f"    Nodes violating:     {len(violations['nodes_violating'])} nodes")

    rms_ratio = balance.rms_residual / max(baseline["rms"], 1e-10)
    print(f"\n  Diagnostic: RMS ratio (violation/baseline) = {rms_ratio:.1f}x")
    print(f"  Signature: ELEVATED RMS residual = convergence failure (U2)")


# ---------------------------------------------------------------------------
# 3. U3 violation: phase incompatibility
# ---------------------------------------------------------------------------


def demo_u3_violation(baseline: dict) -> None:
    """Detect U3 (phase incompatibility) violation from residuals."""
    print("\n" + "=" * 65)
    print("  3. U3 VIOLATION — Phase Incompatibility (Antiphase Coupling)")
    print("=" * 65)

    G = _build_graph()
    snap_before = capture_conservation_snapshot(G)

    for _ in range(5):
        _evolve_compliant(G)
    _inject_u3_violation(G)  # Force antiphase
    for _ in range(5):
        _evolve_compliant(G)

    snap_after = capture_conservation_snapshot(G)
    balance = verify_conservation_balance(snap_before, snap_after, dt=10 * 0.05)
    violations = detect_grammar_violations_from_conservation(balance)

    print(f"\n  Protocol: 5 compliant steps -> U3 breach -> 5 more steps")
    print(
        f"    Conservation quality: {balance.conservation_quality:.4f}  "
        f"(baseline: {baseline['quality']:.4f})"
    )
    print(
        f"    RMS residual:        {balance.rms_residual:.6f}  "
        f"(baseline: {baseline['rms']:.6f})"
    )
    print(
        f"    Max residual:        {balance.max_residual:.6f}  "
        f"(baseline: {baseline['max']:.6f})"
    )
    print(
        f"    Charge drift:        {balance.charge_drift:.6f}  "
        f"(baseline: {baseline['drift']:.6f})"
    )
    print(f"    GVI:                 {balance.grammar_violation_index:.6f}")
    print(f"    Violations detected: {violations['violations_detected']}")
    print(f"    Violation types:     {violations['violation_types']}")
    print(f"    Severity:            {violations['severity']:.4f}")
    print(f"    Nodes violating:     {len(violations['nodes_violating'])} nodes")

    max_ratio = balance.max_residual / max(baseline["max"], 1e-10)
    print(f"\n  Diagnostic: Max residual ratio = {max_ratio:.1f}x")
    print(f"  Signature: LOCALIZED MAX residual spikes = phase incompatibility (U3)")


# ---------------------------------------------------------------------------
# 4. U6 violation: confinement breach
# ---------------------------------------------------------------------------


def demo_u6_violation(baseline: dict) -> None:
    """Detect U6 (confinement) violation from charge drift."""
    print("\n" + "=" * 65)
    print("  4. U6 VIOLATION — Confinement Breach (Phi_s Escape)")
    print("=" * 65)

    G = _build_graph()
    snap_before = capture_conservation_snapshot(G)

    for _ in range(5):
        _evolve_compliant(G)
    _inject_u6_violation(G)  # Explosive DELTA_NFR at hub
    for _ in range(5):
        _evolve_compliant(G)

    snap_after = capture_conservation_snapshot(G)
    balance = verify_conservation_balance(snap_before, snap_after, dt=10 * 0.05)
    violations = detect_grammar_violations_from_conservation(balance)

    print(f"\n  Protocol: 5 compliant steps -> U6 breach -> 5 more steps")
    print(
        f"    Conservation quality: {balance.conservation_quality:.4f}  "
        f"(baseline: {baseline['quality']:.4f})"
    )
    print(
        f"    RMS residual:        {balance.rms_residual:.6f}  "
        f"(baseline: {baseline['rms']:.6f})"
    )
    print(
        f"    Max residual:        {balance.max_residual:.6f}  "
        f"(baseline: {baseline['max']:.6f})"
    )
    print(
        f"    Charge drift:        {balance.charge_drift:.6f}  "
        f"(baseline: {baseline['drift']:.6f})"
    )
    print(f"    GVI:                 {balance.grammar_violation_index:.6f}")
    print(f"    Violations detected: {violations['violations_detected']}")
    print(f"    Violation types:     {violations['violation_types']}")
    print(f"    Severity:            {violations['severity']:.4f}")
    print(f"    Nodes violating:     {len(violations['nodes_violating'])} nodes")

    drift_ratio = balance.charge_drift / max(baseline["drift"], 1e-10)
    print(f"\n  Diagnostic: Charge drift ratio = {drift_ratio:.1f}x")
    print(f"  Signature: CHARGE DRIFT > U6 Phi_s bound (~1.571) = breach (U6)")


# ---------------------------------------------------------------------------
# 5. Comparative severity analysis
# ---------------------------------------------------------------------------


def demo_severity_comparison() -> None:
    """Compare all violation types on the same graph configuration."""
    print("\n" + "=" * 65)
    print("  5. COMPARATIVE SEVERITY ANALYSIS")
    print("=" * 65)

    scenarios = [
        ("Compliant", None),
        ("U2 breach", _inject_u2_violation),
        ("U3 breach", _inject_u3_violation),
        ("U6 breach", _inject_u6_violation),
    ]

    print(
        f"\n  {'Scenario':<14}  {'Quality':>10}  {'RMS':>10}  "
        f"{'Max_res':>10}  {'Drift':>10}  {'GVI':>10}  {'Severity':>10}"
    )
    print("  " + "-" * 76)

    for name, inject_fn in scenarios:
        G = _build_graph()
        snap_before = capture_conservation_snapshot(G)

        for _ in range(5):
            _evolve_compliant(G)
        if inject_fn is not None:
            inject_fn(G)
        for _ in range(5):
            _evolve_compliant(G)

        snap_after = capture_conservation_snapshot(G)
        balance = verify_conservation_balance(snap_before, snap_after, dt=10 * 0.05)
        violations = detect_grammar_violations_from_conservation(balance)

        print(
            f"  {name:<14}  {balance.conservation_quality:10.4f}  "
            f"{balance.rms_residual:10.6f}  {balance.max_residual:10.6f}  "
            f"{balance.charge_drift:10.6f}  {balance.grammar_violation_index:10.6f}  "
            f"{violations['severity']:10.4f}"
        )

    print(
        f"""
  Violation signatures (from ss 12):
    U2 (convergence):  High RMS residual (global instability)
    U3 (phase):        High MAX residual (local incompatibility)
    U6 (confinement):  High charge DRIFT (global escape)

  The conservation law acts as a universal grammar violation detector:
    S_grammar = 0  <=>  Grammar U1-U6 satisfied
    S_grammar > 0  ==>  Violation type classifiable from residual pattern
"""
    )


# ---------------------------------------------------------------------------
# Main
# ---------------------------------------------------------------------------


def main() -> None:
    print()
    print("*" * 65)
    print("  TNFR Example 36: Grammar Violation Detector")
    print("  Theory: STRUCTURAL_CONSERVATION_THEOREM.md ss 12")
    print("*" * 65)

    baseline = demo_baseline()
    demo_u2_violation(baseline)
    demo_u3_violation(baseline)
    demo_u6_violation(baseline)
    demo_severity_comparison()

    print("=" * 65)
    print("  SUMMARY")
    print("=" * 65)
    print(
        f"""
  Grammar Violation Detection via Conservation Residuals (ss 12):

  Main result: S_grammar != 0  detects and classifies grammar violations.

  Detected violation types:
    U2 — Convergence failure:    RMS residual elevated globally
    U3 — Phase incompatibility:  Max residual spikes at boundary nodes
    U6 — Confinement breach:     Charge drift exceeds the U6 Phi_s bound (~1.571)

  The conservation law provides a SINGLE diagnostic framework
  for ALL grammar violations — no separate checker needed per rule.
  This is the Noether-like consequence of grammar symmetry.
"""
    )


if __name__ == "__main__":
    main()