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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: examples/08_emergent_geometry/119_phase_sector_directed_residue.py

119_phase_sector_directed_residue.py

Example 119 — The Phase Sector: Directed Residue Operator Detects All Odd Primes

Example 117 (Reading B) found that the emergent diffusion spectrum reproduces the Paley rigidity — but ONLY for primes n ≡ 1 (mod 4), and it could not separate prime powers (49 = 7² was rigid). This example crosses that wall using the phase sector: the same canonical emergent operator applied to the directed residue graph, whose spectrum is COMPLEX.

The structural reason for the mod-4 wall

For n ≡ 1 (mod 4), −1 is a quadratic residue, so the residue graph is SYMMETRIC: the canonical diffusion operator L_rw = I − D⁻¹W is self-adjoint and its spectrum is REAL — the support/scale sector. For n ≡ 3 (mod 4), −1 is NOT a residue, so the residue digraph is a Paley tournament: every pair has exactly one directed edge. The canonical operator on this DIRECTED graph is non-self-adjoint (a non-symmetric circulant, hence normal) and its spectrum is COMPLEX — the arithmetic content lives in the PHASE (the imaginary part), which the real spectrum of example 117 discards.

Doctrine compliance (the emergent operator, unchanged)

This uses the SAME canonical emergent operator — tnfr.physics.structural_diffusion.structural_diffusion_operator (the literal ΔNFR EPI channel) — directly on a networkx.DiGraph. Verified identical to a hand-built operator (max|Δ| = 0). Nothing ad-hoc: the complex spectrum is the canonical emergent geometry on a directed graph. Only arithmetic input: x² mod n.

Three measured results

R1 UNIFIED PRIMALITY (both mod-4 classes). "The directed emergent operator has exactly 3 distinct (complex) eigenvalues" ⟺ n is an odd prime — 58/58 correct over odd n ∈ [5, 119], zero mismatches. This extends Reading B from the n ≡ 1 (mod 4) primes (example 117) to ALL odd primes via the phase sector.

R2 PRIME POWERS RESOLVED. The directed operator gives 4+ distinct eigenvalues for 9 = 3², 25 = 5², 49 = 7², 121 = 11² — it SEPARATES primes from prime powers, which the real symmetric operator of example 117 could NOT (there 49 was rigid, the honest caveat). The phase channel removes that caveat.

R3 THE PHASE ENCODES √n (Gauss sum). For n ≡ 3 (mod 4) primes the imaginary spectrum is the Paley-tournament eigenvalue structure (−1 ± i√n)/2 on the adjacency — max|Im(λ)| of the diffusion operator scales as √n/(n−1), a Gauss-sum fact carried in the PHASE.

Honest scope

This is a genuine, non-circular extension of Reading B to all odd primes (input is only x² mod n), and it removes the prime-power caveat — a real improvement over example 117. But it remains SPECTRAL and bounded by the same e–π / Fix(G)^⊥ wall as the paused TNFR-Riemann program: it detects primality structurally, it does not factor, does not reach the continuous phase S(T) = (1/π)arg ζ(½+iT), and closes no open problem. The "3 distinct eigenvalues" rigidity is the strongly-regular / doubly-regular tournament signature (a known algebraic-graph fact), recovered here as the canonical emergent operator's spectrum.

References

  • src/tnfr/physics/structural_diffusion.py (structural_diffusion_operator = ΔNFR channel)
  • examples/08_emergent_geometry/117_emergent_geometry_residue_graph.py (the real sector, n≡1 mod4)
  • examples/08_emergent_geometry/118_emergent_vs_classical_operator.py (emergent vs classical)
  • theory/TNFR_NUMBER_THEORY.md §9.6 (this example; §9.5 three-sector unification)
  • benchmarks/primes_as_consequence.py (Reading B, the e–π / Fix(G)^⊥ wall)
  • AGENTS.md "Regime Correspondences" (the complex field Ψ = K_φ + i·J_φ)

Source Code

python
#!/usr/bin/env python3
"""
Example 119 — The Phase Sector: Directed Residue Operator Detects All Odd Primes
================================================================================

Example 117 (Reading B) found that the emergent diffusion spectrum reproduces
the Paley rigidity — but ONLY for primes n ≡ 1 (mod 4), and it could not
separate prime powers (49 = 7² was rigid). This example crosses that wall using
the **phase sector**: the same canonical emergent operator applied to the
*directed* residue graph, whose spectrum is COMPLEX.

The structural reason for the mod-4 wall
----------------------------------------
For n ≡ 1 (mod 4), −1 is a quadratic residue, so the residue graph is
SYMMETRIC: the canonical diffusion operator L_rw = I − D⁻¹W is self-adjoint and
its spectrum is REAL — the support/scale sector. For n ≡ 3 (mod 4), −1 is NOT a
residue, so the residue digraph is a **Paley tournament**: every pair has
exactly one directed edge. The canonical operator on this DIRECTED graph is
non-self-adjoint (a non-symmetric circulant, hence normal) and its spectrum is
COMPLEX — the arithmetic content lives in the
PHASE (the imaginary part), which the real spectrum of example 117 discards.

Doctrine compliance (the emergent operator, unchanged)
------------------------------------------------------
This uses the SAME canonical emergent operator —
`tnfr.physics.structural_diffusion.structural_diffusion_operator` (the literal
ΔNFR EPI channel) — directly on a `networkx.DiGraph`. Verified identical to a
hand-built operator (max|Δ| = 0). Nothing ad-hoc: the complex spectrum is the
canonical emergent geometry on a directed graph. Only arithmetic input: x² mod n.

Three measured results
----------------------
R1 UNIFIED PRIMALITY (both mod-4 classes). "The directed emergent operator has
   exactly 3 distinct (complex) eigenvalues" ⟺ n is an odd prime — 58/58 correct
   over odd n ∈ [5, 119], zero mismatches. This extends Reading B from the
   n ≡ 1 (mod 4) primes (example 117) to ALL odd primes via the phase sector.

R2 PRIME POWERS RESOLVED. The directed operator gives 4+ distinct eigenvalues
   for 9 = 3², 25 = 5², 49 = 7², 121 = 11² — it SEPARATES primes from prime
   powers, which the real symmetric operator of example 117 could NOT (there
   49 was rigid, the honest caveat). The phase channel removes that caveat.

R3 THE PHASE ENCODES √n (Gauss sum). For n ≡ 3 (mod 4) primes the imaginary
   spectrum is the Paley-tournament eigenvalue structure (−1 ± i√n)/2 on the
   adjacency — max|Im(λ)| of the diffusion operator scales as √n/(n−1), a
   Gauss-sum fact carried in the PHASE.

Honest scope
------------
This is a genuine, non-circular extension of Reading B to all odd primes (input
is only x² mod n), and it removes the prime-power caveat — a real improvement
over example 117. But it remains SPECTRAL and bounded by the same e–π / Fix(G)^⊥
wall as the paused TNFR-Riemann program: it detects primality structurally, it
does not factor, does not reach the continuous phase S(T) = (1/π)arg ζ(½+iT),
and closes no open problem. The "3 distinct eigenvalues" rigidity is the
strongly-regular / doubly-regular tournament signature (a known algebraic-graph
fact), recovered here as the canonical emergent operator's spectrum.

References
----------
- src/tnfr/physics/structural_diffusion.py (structural_diffusion_operator = ΔNFR channel)
- examples/08_emergent_geometry/117_emergent_geometry_residue_graph.py (the real sector, n≡1 mod4)
- examples/08_emergent_geometry/118_emergent_vs_classical_operator.py (emergent vs classical)
- theory/TNFR_NUMBER_THEORY.md §9.6 (this example; §9.5 three-sector unification)
- benchmarks/primes_as_consequence.py (Reading B, the e–π / Fix(G)^⊥ wall)
- AGENTS.md "Regime Correspondences" (the complex field Ψ = K_φ + i·J_φ)
"""

import os
import sys

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

import networkx as nx
import numpy as np
from sympy import factorint, isprime

from tnfr.physics.structural_diffusion import structural_diffusion_operator


def _qr(n):
    return {(x * x) % n for x in range(1, n)} - {0}


def residue_digraph(n):
    """Directed residue graph: edge i->j iff (j-i) mod n is a quadratic residue.

    For n ≡ 1 (mod 4) this is symmetric (−1 is a QR); for n ≡ 3 (mod 4) it is a
    Paley tournament (one directed edge per pair). The ONLY arithmetic input is
    x² mod n.
    """
    R = _qr(n)
    G = nx.DiGraph()
    G.add_nodes_from(range(n))
    for i in range(n):
        for j in range(n):
            if i != j and ((j - i) % n) in R:
                G.add_edge(i, j)
    return G


def _emergent_spectrum(n):
    """Eigenvalues of the CANONICAL emergent operator on the residue digraph."""
    nodes, L = structural_diffusion_operator(residue_digraph(n))
    return np.linalg.eigvals(L)


def _n_distinct(ev, decimals=4):
    return len(np.unique(np.round(ev, decimals)))


def experiment_1_unified_primality():
    """R1: 3 distinct complex eigenvalues <=> odd prime (both mod-4 classes)."""
    print("=" * 74)
    print("EXPERIMENT 1: Unified Primality via the Complex (Phase) Spectrum")
    print("=" * 74)
    print()
    print("The canonical emergent operator on the DIRECTED residue graph. For")
    print("n=3 mod4 the spectrum is COMPLEX (Paley tournament). Rigidity test:")
    print("'exactly 3 distinct eigenvalues' <=> odd prime.")
    print()
    print(
        f"  {'n':>4} {'mod4':>5} {'prime':>6} {'n_distinct':>11} "
        f"{'max|Im|':>9} {'3-rigid?':>9}"
    )
    for n in (7, 11, 13, 19, 23, 29, 31, 37, 15, 21, 33, 35):
        ev = _emergent_spectrum(n)
        d = _n_distinct(ev)
        mi = float(np.max(np.abs(ev.imag)))
        ok = "YES" if (d == 3) == isprime(n) else "MISS"
        print(
            f"  {n:>4} {n % 4:>5} {str(isprime(n)):>6} {d:>11} " f"{mi:>9.4f} {ok:>9}"
        )
    # full sweep
    correct = sum(
        (_n_distinct(_emergent_spectrum(n)) == 3) == isprime(n)
        for n in range(5, 120, 2)
    )
    print()
    print(
        f"  full sweep odd n in [5,119]: "
        f"'3 distinct == prime' correct = {correct}/58"
    )
    print("  -> extends Reading B from n=1 mod4 (ex 117) to ALL odd primes.")
    print()


def experiment_2_prime_powers():
    """R2: the directed operator separates primes from prime powers."""
    print("=" * 74)
    print("EXPERIMENT 2: Prime Powers Resolved (the example-117 caveat removed)")
    print("=" * 74)
    print()
    print("Example 117's real operator made 49=7^2 rigid (3 distinct), the")
    print("honest caveat. The directed (phase) operator separates them:")
    print()
    print(f"  {'n':>5} {'factorization':>14} {'n_distinct':>11} {'verdict':>9}")
    for n in (7, 9, 11, 25, 13, 27, 49, 121):
        d = _n_distinct(_emergent_spectrum(n))
        fac = dict(factorint(n))
        verdict = "prime" if d == 3 else ("p^k" if len(fac) == 1 else "comp")
        print(f"  {n:>5} {str(fac):>14} {d:>11} {verdict:>9}")
    print()
    print("  -> 9,25,49,121 (prime squares) give 4 distinct eigenvalues, NOT 3.")
    print("     The phase channel distinguishes primes from prime powers.")
    print()


def experiment_3_phase_encodes_sqrt_n():
    """R3: the imaginary spectrum carries the Paley-tournament Gauss sum √n."""
    print("=" * 74)
    print("EXPERIMENT 3: The Phase Encodes sqrt(n) (Gauss Sum in the Imaginary)")
    print("=" * 74)
    print()
    print("For n=3 mod4 primes the residue digraph is a Paley tournament with")
    print("adjacency eigenvalues (-1 +/- i*sqrt(n))/2. The diffusion operator's")
    print("max|Im(lambda)| inherits this, scaling as sqrt(n)/(n-1).")
    print()
    print(f"  {'n':>4} {'max|Im|':>10} {'sqrt(n)/(n-1)':>14} {'ratio':>8}")
    for n in (7, 11, 19, 23, 31, 43, 47, 59):
        if not isprime(n):
            continue
        mi = float(np.max(np.abs(_emergent_spectrum(n).imag)))
        ref = np.sqrt(n) / (n - 1)
        print(f"  {n:>4} {mi:>10.4f} {ref:>14.4f} {mi / ref:>8.3f}")
    print()
    print("  -> ratio ~ 1: the PHASE (imaginary spectrum) carries the Gauss-sum")
    print("     sqrt(n). This is the arithmetic channel the real sector misses.")
    print()


def main():
    print()
    print("  TNFR Example 119: The Phase Sector - Directed Residue Operator")
    print("  Detects all odd primes; resolves the prime-power caveat")
    print("  ==============================================================")
    print()
    experiment_1_unified_primality()
    experiment_2_prime_powers()
    experiment_3_phase_encodes_sqrt_n()
    print("=" * 74)
    print("WHAT THIS ESTABLISHES")
    print("=" * 74)
    print()
    print("The SAME canonical emergent operator (structural_diffusion_operator,")
    print("the dNFR channel), applied to the DIRECTED residue graph, has a")
    print("COMPLEX spectrum whose PHASE detects ALL odd primes (58/58) and")
    print("separates them from prime powers - removing the example-117 caveat.")
    print("This is a genuine, non-circular extension of Reading B via the phase")
    print("sector (input only x^2 mod n). It remains SPECTRAL and bounded by the")
    print("same e-pi / Fix(G)^perp wall as the paused Riemann program: it detects")
    print("primality, it does not factor, does not reach S(T)=arg zeta, closes")
    print("no open problem. The emergent geometry on a DiGraph IS the phase.")
    print()


if __name__ == "__main__":
    main()