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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: examples/08_emergent_geometry/123_symmetry_sector_decomposition.py

123_symmetry_sector_decomposition.py

Example 123 — The Symmetry-Sector Decomposition: Why the Substrate Sees Only Down to Orbits and the Spectrum Sees the Rest (a Capstone for the 117-122 Arc)

Example 120 found, for the residue digraph, that vertex-transitivity confines the arithmetic to the GLOBAL spectrum (Fix(G_aut)^perp) and leaves the per-node substrate in the symmetric sector Fix(G_aut), blind. This example shows that is a special case of a GENERAL representation-theoretic principle of the canonical emergent operator — and that the principle is exactly why every wall in the 117-122 arc (and the Riemann residual) has the same shape.

The principle (Schur, applied to the canonical emergent operator)

For ANY graph G with automorphism group Aut(G), the canonical emergent operator L_rw = I - D^-1 W is EQUIVARIANT: it commutes with the permutation representation of every automorphism,

text
P_sigma L_rw = L_rw P_sigma   for all sigma in Aut(G).

By Schur's lemma, an equivariant operator block-diagonalizes by the isotypic components (irreducible representations) of Aut(G). The coarsest split is

text
R^N = Fix(G)  (+)  Fix(G)^perp,

where Fix(G) = { functions constant on the orbits of Aut(G) } is the trivial isotypic component, and dim Fix(G) = number of orbits of Aut(G) on the vertices. L_rw preserves each block. Consequently:

  • Any canonical PER-NODE observable that is itself Aut(G)-invariant (a function of the local structure only) lands in Fix(G): it is constant WITHIN each orbit. It can distinguish orbit from orbit, never node from node within an orbit.
  • All the DISCRIMINATING information (the eigenmodes that separate nodes inside an orbit) lives in Fix(G)^perp, the non-trivial irreps — i.e. in the SPECTRUM.

The example-120 wall is the extreme case: a VERTEX-TRANSITIVE graph has ONE orbit, so Fix(G) = constants (dim 1), and the per-node substrate is GLOBALLY constant — blind to everything. A graph with several orbits (a star, a path) lets the substrate see DOWN TO the orbit partition, but no finer.

Doctrine compliance

The operator is the canonical structural_diffusion_operator (the literal DeltaNFR EPI channel L_rw = I - D^-1 W); the per-node fields come from the canonical symplectic substrate extract_phase_space_point; the dynamics is the canonical nodal equation. The automorphisms are read off the graph (networkx VF2). No formula is re-implemented.

Five measured results (across cyclic, full-symmetric, star, path, product)

M1 EQUIVARIANCE. ||P_sigma L_rw - L_rw P_sigma|| = 0 (machine zero) for EVERY automorphism of every test graph: the canonical operator commutes with the whole automorphism group.

M2 dim Fix(G) = #ORBITS. The trivial projector P_triv = mean over Aut(G) of P_sigma has rank exactly equal to the number of vertex orbits (1 for the vertex-transitive cycle / complete / torus, 2 for the star = {center, leaves}, 3 for the path = {ends, near-ends, middle}).

M3 L_rw PRESERVES Fix(G). ||L_rw P_triv - P_triv L_rw|| ~ 0: the operator is block-diagonal with respect to Fix(G) (+) Fix(G)^perp.

M4 THE SUBSTRATE LIVES IN Fix(G). The canonical per-node symplectic substrate from a symmetric seed satisfies P_triv v = v exactly (orbit-constant). On a vertex-transitive graph that forces sigma(Phi_s) = 0 — exactly the example-120 per-node blindness, now a COROLLARY. Per-node structural invariants (degree, clustering) are likewise constant within each orbit.

M5 THE DISCRIMINATING SPECTRUM LIVES IN Fix(G)^perp. Only the constant eigenmode has ||P_triv v|| = 1 (it IS Fix(G)); every node-separating eigenmode has ||P_triv v|| = 0 (Fix(G)^perp).

The unification (one structure, the whole arc)

This is the single structure behind every result of the 117-122 arc: the canonical emergent operator splits into a per-node-blind sector Fix(G) (where the symplectic substrate lives) and a discriminating spectral sector Fix(G)^perp (where the arithmetic / the distinguishing information lives), indexed by the irreps of the graph's automorphism group. The residue-digraph wall (120), the substrate blindness (103/116), the spectral primality (119), and the Riemann oscillatory residue S(T) in ker(R_inf) ^ Fix(S_n)^perp are all the same Fix(G) / Fix(G)^perp split for different symmetry groups.

Honest scope

This is the representation theory of graph automorphisms (Schur's lemma applied to an equivariant operator) re-expressed in the canonical emergent operator. It EXPLAINS and UNIFIES the arc's walls; it is not new mathematics and closes no open problem. The value is the clean, measured statement that the per-node substrate resolves the orbit partition and no finer, with the spectrum carrying the rest.

References

  • src/tnfr/physics/structural_diffusion.py (structural_diffusion_operator)
  • src/tnfr/physics/symplectic_substrate.py (extract_phase_space_point)
  • examples/08_emergent_geometry/120_symmetry_wall_substrate_vs_spectrum.py (the special case)
  • theory/TNFR_NUMBER_THEORY.md §9.10 (this example; the general principle)
  • AGENTS.md "REMESH-∞ Closure" (S(T) in ker(R_inf) ^ Fix(S_n)^perp)

Source Code

python
#!/usr/bin/env python3
"""
Example 123 — The Symmetry-Sector Decomposition: Why the Substrate Sees Only
Down to Orbits and the Spectrum Sees the Rest (a Capstone for the 117-122 Arc)
==============================================================================

Example 120 found, for the residue digraph, that vertex-transitivity confines
the arithmetic to the GLOBAL spectrum (Fix(G_aut)^perp) and leaves the per-node
substrate in the symmetric sector Fix(G_aut), blind. This example shows that is
a special case of a GENERAL representation-theoretic principle of the canonical
emergent operator — and that the principle is exactly why every wall in the
117-122 arc (and the Riemann residual) has the same shape.

The principle (Schur, applied to the canonical emergent operator)
-----------------------------------------------------------------
For ANY graph G with automorphism group Aut(G), the canonical emergent operator
L_rw = I - D^-1 W is EQUIVARIANT: it commutes with the permutation
representation of every automorphism,

    P_sigma L_rw = L_rw P_sigma   for all sigma in Aut(G).

By Schur's lemma, an equivariant operator block-diagonalizes by the isotypic
components (irreducible representations) of Aut(G). The coarsest split is

    R^N = Fix(G)  (+)  Fix(G)^perp,

where Fix(G) = { functions constant on the orbits of Aut(G) } is the trivial
isotypic component, and dim Fix(G) = number of orbits of Aut(G) on the vertices.
L_rw preserves each block. Consequently:

  * Any canonical PER-NODE observable that is itself Aut(G)-invariant (a function
    of the local structure only) lands in Fix(G): it is constant WITHIN each
    orbit. It can distinguish orbit from orbit, never node from node within an
    orbit.
  * All the DISCRIMINATING information (the eigenmodes that separate nodes inside
    an orbit) lives in Fix(G)^perp, the non-trivial irreps — i.e. in the SPECTRUM.

The example-120 wall is the extreme case: a VERTEX-TRANSITIVE graph has ONE
orbit, so Fix(G) = constants (dim 1), and the per-node substrate is GLOBALLY
constant — blind to everything. A graph with several orbits (a star, a path)
lets the substrate see DOWN TO the orbit partition, but no finer.

Doctrine compliance
-------------------
The operator is the canonical `structural_diffusion_operator` (the literal
DeltaNFR EPI channel L_rw = I - D^-1 W); the per-node fields come from the
canonical symplectic substrate `extract_phase_space_point`; the dynamics is the
canonical nodal equation. The automorphisms are read off the graph (networkx
VF2). No formula is re-implemented.

Five measured results (across cyclic, full-symmetric, star, path, product)
--------------------------------------------------------------------------
M1 EQUIVARIANCE. ||P_sigma L_rw - L_rw P_sigma|| = 0 (machine zero) for EVERY
   automorphism of every test graph: the canonical operator commutes with the
   whole automorphism group.

M2 dim Fix(G) = #ORBITS. The trivial projector P_triv = mean over Aut(G) of
   P_sigma has rank exactly equal to the number of vertex orbits (1 for the
   vertex-transitive cycle / complete / torus, 2 for the star = {center,
   leaves}, 3 for the path = {ends, near-ends, middle}).

M3 L_rw PRESERVES Fix(G). ||L_rw P_triv - P_triv L_rw|| ~ 0: the operator is
   block-diagonal with respect to Fix(G) (+) Fix(G)^perp.

M4 THE SUBSTRATE LIVES IN Fix(G). The canonical per-node symplectic substrate
   from a symmetric seed satisfies P_triv v = v exactly (orbit-constant). On a
   vertex-transitive graph that forces sigma(Phi_s) = 0 — exactly the example-120
   per-node blindness, now a COROLLARY. Per-node structural invariants (degree,
   clustering) are likewise constant within each orbit.

M5 THE DISCRIMINATING SPECTRUM LIVES IN Fix(G)^perp. Only the constant
   eigenmode has ||P_triv v|| = 1 (it IS Fix(G)); every node-separating
   eigenmode has ||P_triv v|| = 0 (Fix(G)^perp).

The unification (one structure, the whole arc)
----------------------------------------------
This is the single structure behind every result of the 117-122 arc: the
canonical emergent operator splits into a per-node-blind sector Fix(G) (where
the symplectic substrate lives) and a discriminating spectral sector
Fix(G)^perp (where the arithmetic / the distinguishing information lives),
indexed by the irreps of the graph's automorphism group. The residue-digraph
wall (120), the substrate blindness (103/116), the spectral primality (119),
and the Riemann oscillatory residue S(T) in ker(R_inf) ^ Fix(S_n)^perp are all
the same Fix(G) / Fix(G)^perp split for different symmetry groups.

Honest scope
------------
This is the representation theory of graph automorphisms (Schur's lemma applied
to an equivariant operator) re-expressed in the canonical emergent operator. It
EXPLAINS and UNIFIES the arc's walls; it is not new mathematics and closes no
open problem. The value is the clean, measured statement that the per-node
substrate resolves the orbit partition and no finer, with the spectrum carrying
the rest.

References
----------
- src/tnfr/physics/structural_diffusion.py (structural_diffusion_operator)
- src/tnfr/physics/symplectic_substrate.py (extract_phase_space_point)
- examples/08_emergent_geometry/120_symmetry_wall_substrate_vs_spectrum.py (the special case)
- theory/TNFR_NUMBER_THEORY.md §9.10 (this example; the general principle)
- AGENTS.md "REMESH-∞ Closure" (S(T) in ker(R_inf) ^ Fix(S_n)^perp)
"""

import os
import sys

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

import networkx as nx
import numpy as np
from networkx.algorithms.isomorphism import GraphMatcher

from tnfr.alias import set_attr
from tnfr.constants.aliases import ALIAS_EPI, ALIAS_VF
from tnfr.dynamics import default_compute_delta_nfr
from tnfr.physics.structural_diffusion import structural_diffusion_operator
from tnfr.physics.symplectic_substrate import extract_phase_space_point


def _perm_matrix(mapping, nodes):
    idx = {nd: i for i, nd in enumerate(nodes)}
    n = len(nodes)
    P = np.zeros((n, n))
    for src, dst in mapping.items():
        P[idx[dst], idx[src]] = 1.0
    return P


def _automorphisms(G, cap=2000):
    out = []
    for m in GraphMatcher(G, G).isomorphisms_iter():
        out.append(m)
        if len(out) >= cap:
            break
    return out


def _orbit_count(auts, nodes):
    """Number of vertex orbits via union-find over the automorphisms."""
    idx = {nd: i for i, nd in enumerate(nodes)}
    parent = list(range(len(nodes)))

    def find(a):
        while parent[a] != a:
            parent[a] = parent[parent[a]]
            a = parent[a]
        return a

    for m in auts:
        for s, d in m.items():
            ra, rb = find(idx[s]), find(idx[d])
            if ra != rb:
                parent[ra] = rb
    return len({find(i) for i in range(len(nodes))})


def _trivial_projector(auts, nodes):
    n = len(nodes)
    P = np.zeros((n, n))
    for m in auts:
        P += _perm_matrix(m, nodes)
    return P / len(auts)


def _seed_symmetric(G):
    for nd in G.nodes():
        G.nodes[nd]["theta"] = 0.3
        set_attr(G.nodes[nd], ALIAS_EPI, 0.2)
        set_attr(G.nodes[nd], ALIAS_VF, 1.0)
    default_compute_delta_nfr(G)


def _test_graphs():
    return [
        ("cycle C8 (D8)", nx.cycle_graph(8)),
        ("complete K6 (S6)", nx.complete_graph(6)),
        ("star K1,5 (S5)", nx.star_graph(5)),
        ("path P6 (Z2)", nx.path_graph(6)),
        ("torus C3xC3", nx.cartesian_product(nx.cycle_graph(3), nx.cycle_graph(3))),
    ]


def experiment_1_equivariance_orbits():
    """M1-M3: equivariance, rank(P_triv)=#orbits, L_rw preserves Fix(G)."""
    print("=" * 74)
    print("EXPERIMENT 1: Equivariance, dim Fix(G) = #orbits, L_rw preserves it")
    print("=" * 74)
    print("L_rw commutes with every automorphism (Schur); the trivial projector")
    print("P_triv = mean of P_sigma has rank = #vertex orbits = dim Fix(G).")
    print()
    print(
        f"  {'graph':22s} {'|Aut|':>6} {'n':>3} {'orbits':>7} "
        f"{'rank':>5} {'equiv':>8} {'preserve':>9}"
    )
    out = {}
    for name, G in _test_graphs():
        nodes, L = structural_diffusion_operator(G)
        auts = _automorphisms(G)
        max_comm = max(
            float(
                np.linalg.norm(_perm_matrix(m, nodes) @ L - L @ _perm_matrix(m, nodes))
            )
            for m in auts
        )
        P_triv = _trivial_projector(auts, nodes)
        rank = int(np.linalg.matrix_rank(P_triv, tol=1e-9))
        orbits = _orbit_count(auts, nodes)
        pres = float(np.linalg.norm(L @ P_triv - P_triv @ L))
        out[name] = (nodes, L, P_triv, orbits)
        print(
            f"  {name:22s} {len(auts):>6} {len(nodes):>3} {orbits:>7} "
            f"{rank:>5} {max_comm:>8.1e} {pres:>9.1e}"
        )
    print()
    print("  -> equiv=0 (commutes with all Aut); rank=orbits (dim Fix(G));")
    print("     preserve~0 (block-diagonal: Fix(G) (+) Fix(G)^perp).")
    return out


def experiment_2_substrate_in_fix(results):
    """M4: per-node symmetric-seed substrate lies in Fix(G) (orbit-constant)."""
    print()
    print("=" * 74)
    print("EXPERIMENT 2: The Per-Node Substrate Lives in Fix(G) (Orbit-Constant)")
    print("=" * 74)
    print("The canonical symplectic substrate from a symmetric seed satisfies")
    print("P_triv v = v (orbit-constant). Vertex-transitive -> 1 orbit ->")
    print("Fix(G)=constants -> sigma(Phi_s)=0 (the example-120 blindness).")
    print()
    print(
        f"  {'graph':22s} {'orbits':>7} {'||v-P_triv v||':>15} " f"{'sigma(Phi_s)':>13}"
    )
    for name, G in _test_graphs():
        nodes, L, P_triv, orbits = results[name]
        _seed_symmetric(G)
        p = extract_phase_space_point(G)
        v = np.array([p.phi_s[i] for i in range(len(nodes))], dtype=float)
        resid = float(np.linalg.norm(v - P_triv @ v))
        print(f"  {name:22s} {orbits:>7} {resid:>15.1e} {np.std(v):>13.1e}")
    print()
    print("  -> ||v - P_triv v|| = 0: the substrate is orbit-constant, in Fix(G).")


def experiment_3_orbit_resolution():
    """M4b: per-node invariants resolve orbits but no finer."""
    print()
    print("=" * 74)
    print("EXPERIMENT 3: The Substrate Resolves the Orbit Partition, No Finer")
    print("=" * 74)
    print("Per-node degree (a canonical Aut-invariant) takes one value per")
    print("orbit-class: it tells orbit from orbit, never node from node within.")
    print()
    for name, G in [
        ("star K1,5 (S5)", nx.star_graph(5)),
        ("path P6 (Z2)", nx.path_graph(6)),
        ("complete K6 (S6)", nx.complete_graph(6)),
    ]:
        degs = sorted({d for _, d in G.degree()})
        print(
            f"  {name:22s} distinct per-node degrees = {degs} "
            f"({len(degs)} class(es))"
        )
    print()
    print("  -> star: center vs leaves (2 classes); path: ends/near/middle")
    print("     collapse to 2 degree values but 3 orbits; complete: 1 class.")
    print("     The substrate sees the orbit partition; the spectrum sees more.")


def experiment_4_discriminating_spectrum(results):
    """M5: discriminating eigenmodes lie in Fix(G)^perp."""
    print()
    print("=" * 74)
    print("EXPERIMENT 4: The Discriminating Spectrum Lives in Fix(G)^perp")
    print("=" * 74)
    print("Project each emergent eigenmode onto Fix(G): only the constant mode")
    print("has ||P_triv v|| = 1; every node-separating mode has ||P_triv v|| = 0.")
    print()
    for name in ["complete K6 (S6)", "cycle C8 (D8)"]:
        nodes, L, P_triv, orbits = results[name]
        w, V = np.linalg.eig(L)
        order = np.argsort(w.real)
        fracs = []
        for k in range(len(nodes)):
            vk = V[:, order[k]].real
            vk = vk / (np.linalg.norm(vk) + 1e-15)
            fracs.append(float(np.linalg.norm(P_triv @ vk)))
        print(f"  {name}: ||P_triv v_k|| by eigenvalue:")
        print("    " + " ".join(f"{t:.2f}" for t in fracs))
    print()
    print("  -> only the constant mode is in Fix(G); all discriminating modes")
    print("     are in Fix(G)^perp (the spectral / representation sector).")


def main():
    print()
    print("  TNFR Example 123: The Symmetry-Sector Decomposition")
    print("  The Substrate Sees Down to Orbits; the Spectrum Sees the Rest")
    print("  ============================================================")
    print()
    results = experiment_1_equivariance_orbits()
    experiment_2_substrate_in_fix(results)
    experiment_3_orbit_resolution()
    experiment_4_discriminating_spectrum(results)
    print()
    print("=" * 74)
    print("WHAT THIS ESTABLISHES")
    print("=" * 74)
    print("The canonical emergent operator L_rw is EQUIVARIANT under the graph's")
    print("automorphism group, so (Schur) it block-diagonalizes into Fix(G) (+)")
    print("Fix(G)^perp, with dim Fix(G) = #vertex orbits. The per-node symplectic")
    print("substrate lives in Fix(G) -- it resolves the orbit partition and no")
    print("finer (sigma=0 when vertex-transitive); all discriminating information")
    print("lives in Fix(G)^perp, the spectrum. The example-120 residue-digraph")
    print("wall, the substrate blindness (103/116), the spectral primality (119),")
    print("and the Riemann residual S(T) in ker(R_inf) ^ Fix(S_n)^perp are the")
    print("SAME Fix(G)/Fix(G)^perp split for different symmetry groups. HONEST")
    print("SCOPE: this is the representation theory of graph automorphisms")
    print("(Schur) re-expressed in the canonical operator; it explains and")
    print("unifies the arc's walls, it is not new mathematics, closes no problem.")


if __name__ == "__main__":
    main()