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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: examples/08_emergent_geometry/136_heat_kernel_coefficients.py

136_heat_kernel_coefficients.py

Example 136 — The Heat-Kernel Coefficients: Hearing the Network's Geometry (the Discrete Minakshisundaram-Pleijel Expansion)

Example 134 used the LONG-time / return-probability scaling of the heat kernel to read the spectral dimension. This example reads the SHORT-time expansion. The heat trace of a canonical structural operator L,

text
Z(t) = Tr(e^{-t L}) = sum_k (-t)^k / k! * Tr(L^k),

is a Taylor series whose coefficients are the SPECTRAL MOMENTS Tr(L^k). These are EXACT graph invariants -- equal to weighted closed-walk counts -- and the low-order ones HEAR the combinatorial geometry: the node count (volume), the edge count (boundary), and the triangle count (curvature). This is the discrete analogue of the Minakshisundaram-Pleijel / Seeley-deWitt heat-kernel expansion (Weyl 1911; Minakshisundaram-Pleijel 1949), the same content behind Kac's 1966 question "Can one hear the shape of a drum?".

The operator used is the COMBINATORIAL Laplacian L = D - W, which is the canonical Kirchhoff current operator of the structural-flow layer (current_divergence: div(J) = L*EPI, example 99). The coupling matrix W = A (the adjacency) is the canonical coupling of the nodal equation; its closed-walk moments Tr(A^k) give the cleanest triangle reading.

Doctrine compliance

Everything emerges from canonical structural objects: L = D - W is the Kirchhoff operator (verified == current_divergence), W is the canonical coupling matrix. The heat-trace coefficients are read off the spectrum of the canonical operator; nothing is imposed. The quantities are standard spectral-graph invariants (closed walks, the heat-kernel expansion); the example measures them, it does not invent them.

Three measured results

M1 THE HEAT-TRACE COEFFICIENTS ARE THE SPECTRAL MOMENTS. The short-time Taylor coefficients of Z(t) = Tr(e^{-t L}) are exactly Tr(L^k) = sum_i lambda_i^k, verified two independent ways (sum of powered eigenvalues vs trace of the matrix power) to machine precision. The truncated series reproduces Z(t) at small t. This is the discrete Minakshisundaram-Pleijel expansion.

M2 THE MOMENTS HEAR THE GEOMETRY (closed-walk counts). Tr(M^k) counts weighted closed walks of length k. For the Kirchhoff Laplacian: Tr(L^0) = n (nodes / volume), Tr(L^1) = 2m (edges / boundary), Tr(L^2) = 2m + sum d^2 (degree spread). For the canonical coupling matrix W = A: Tr(A^2) = 2m (edges) and Tr(A^3) = 6 * #triangles (triangles / curvature) -- verified against networkx. The heat trace hears volume, boundary, and curvature.

M3 "CAN ONE HEAR THE SHAPE OF A DRUM?" -- NO (Kac 1966). A cospectral pair of non-isomorphic graphs has IDENTICAL heat traces (all coefficients Tr(L^k) equal) yet DIFFERENT triangle counts (0 vs 1): the degree sequence and the triangle count conspire to give the same spectral moments. The heat-kernel coefficients are invariants but NOT a complete invariant -- you cannot always hear the shape.

Honest scope

The heat-kernel coefficients = spectral moments = closed-walk counts are standard spectral graph theory (the discrete heat-kernel / Minakshisundaram-Pleijel expansion), exact and provable. The "hearing the geometry" reading is the empirically-celebrated Weyl law / Kac drum problem. This re-expresses the short-time heat-kernel structure of the canonical Kirchhoff operator; it is complementary to example 134 (long-time spectral dimension). It is not new mathematics and closes no open problem.

References

  • src/tnfr/physics/structural_diffusion.py (current_divergence, structural_current, _adjacency_degree)
  • AGENTS.md "Transport Content of the Nodal Equation (Structural Diffusion)"
  • examples/08_emergent_geometry/134_spectral_dimension_heat_kernel.py (long-time)
  • examples/08_emergent_geometry/99_structural_diffusion.py (the Kirchhoff layer)

Source Code

python
#!/usr/bin/env python3
"""
Example 136 — The Heat-Kernel Coefficients: Hearing the Network's Geometry
(the Discrete Minakshisundaram-Pleijel Expansion)
==============================================================================

Example 134 used the LONG-time / return-probability scaling of the heat kernel
to read the spectral dimension. This example reads the SHORT-time expansion. The
heat trace of a canonical structural operator L,

    Z(t) = Tr(e^{-t L}) = sum_k (-t)^k / k! * Tr(L^k),

is a Taylor series whose coefficients are the SPECTRAL MOMENTS Tr(L^k). These
are EXACT graph invariants -- equal to weighted closed-walk counts -- and the
low-order ones HEAR the combinatorial geometry: the node count (volume), the edge
count (boundary), and the triangle count (curvature). This is the discrete
analogue of the Minakshisundaram-Pleijel / Seeley-deWitt heat-kernel expansion
(Weyl 1911; Minakshisundaram-Pleijel 1949), the same content behind Kac's 1966
question "Can one hear the shape of a drum?".

The operator used is the COMBINATORIAL Laplacian L = D - W, which is the canonical
Kirchhoff current operator of the structural-flow layer (current_divergence:
div(J) = L*EPI, example 99). The coupling matrix W = A (the adjacency) is the
canonical coupling of the nodal equation; its closed-walk moments Tr(A^k) give
the cleanest triangle reading.

Doctrine compliance
-------------------
Everything emerges from canonical structural objects: L = D - W is the Kirchhoff
operator (verified == current_divergence), W is the canonical coupling matrix.
The heat-trace coefficients are read off the spectrum of the canonical operator;
nothing is imposed. The quantities are standard spectral-graph invariants (closed
walks, the heat-kernel expansion); the example measures them, it does not invent
them.

Three measured results
----------------------
M1 THE HEAT-TRACE COEFFICIENTS ARE THE SPECTRAL MOMENTS. The short-time Taylor
   coefficients of Z(t) = Tr(e^{-t L}) are exactly Tr(L^k) = sum_i lambda_i^k,
   verified two independent ways (sum of powered eigenvalues vs trace of the
   matrix power) to machine precision. The truncated series reproduces Z(t) at
   small t. This is the discrete Minakshisundaram-Pleijel expansion.

M2 THE MOMENTS HEAR THE GEOMETRY (closed-walk counts). Tr(M^k) counts weighted
   closed walks of length k. For the Kirchhoff Laplacian: Tr(L^0) = n (nodes /
   volume), Tr(L^1) = 2m (edges / boundary), Tr(L^2) = 2m + sum d^2 (degree
   spread). For the canonical coupling matrix W = A: Tr(A^2) = 2m (edges) and
   Tr(A^3) = 6 * #triangles (triangles / curvature) -- verified against
   networkx. The heat trace hears volume, boundary, and curvature.

M3 "CAN ONE HEAR THE SHAPE OF A DRUM?" -- NO (Kac 1966). A cospectral pair of
   non-isomorphic graphs has IDENTICAL heat traces (all coefficients Tr(L^k)
   equal) yet DIFFERENT triangle counts (0 vs 1): the degree sequence and the
   triangle count conspire to give the same spectral moments. The heat-kernel
   coefficients are invariants but NOT a complete invariant -- you cannot always
   hear the shape.

Honest scope
------------
The heat-kernel coefficients = spectral moments = closed-walk counts are standard
spectral graph theory (the discrete heat-kernel / Minakshisundaram-Pleijel
expansion), exact and provable. The "hearing the geometry" reading is the
empirically-celebrated Weyl law / Kac drum problem. This re-expresses the
short-time heat-kernel structure of the canonical Kirchhoff operator; it is
complementary to example 134 (long-time spectral dimension). It is not new
mathematics and closes no open problem.

References
----------
- src/tnfr/physics/structural_diffusion.py (current_divergence,
  structural_current, _adjacency_degree)
- AGENTS.md "Transport Content of the Nodal Equation (Structural Diffusion)"
- examples/08_emergent_geometry/134_spectral_dimension_heat_kernel.py (long-time)
- examples/08_emergent_geometry/99_structural_diffusion.py (the Kirchhoff layer)
"""

import os
import sys

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

import itertools
import math

import networkx as nx
import numpy as np

from tnfr.alias import set_attr
from tnfr.constants.aliases import ALIAS_EPI
from tnfr.physics.structural_diffusion import _adjacency_degree, current_divergence


def kirchhoff_laplacian(G):
    """Binary combinatorial Laplacian L = D - A.

    Matches the canonical Kirchhoff current operator (current_divergence masks
    by adjacency != 0, i.e. the unweighted structural current). Returns the
    canonical node order, L, the binary adjacency A, and the degree vector.
    """
    nodes, W, _ = _adjacency_degree(G)
    A = (W != 0.0).astype(float)
    deg = A.sum(axis=1)
    return nodes, np.diag(deg) - A, A, deg


def spectral_moments(L, kmax=5):
    """Tr(L^k) for k=0..kmax, computed by trace of the matrix power."""
    moments = []
    Lk = np.eye(L.shape[0])
    for k in range(kmax):
        if k > 0:
            Lk = Lk @ L
        moments.append(float(np.trace(Lk)))
    return moments


def experiment_1_moments_are_coefficients():
    """M1: heat-trace coefficients == spectral moments Tr(L^k)."""
    print("=" * 74)
    print("M1: THE HEAT-TRACE COEFFICIENTS ARE THE SPECTRAL MOMENTS Tr(L^k)")
    print("=" * 74)
    G = nx.watts_strogatz_graph(40, 6, 0.15, seed=1)
    nodes, L, A, deg = kirchhoff_laplacian(G)
    # anchor: L = D - A is the canonical Kirchhoff operator
    epi = np.random.default_rng(0).standard_normal(len(nodes))
    for i, nd in enumerate(nodes):
        set_attr(G.nodes[nd], ALIAS_EPI, float(epi[i]))
    _, divJ = current_divergence(G)
    print(
        f"  anchor: ||L*EPI - current_divergence|| = "
        f"{np.linalg.norm(L @ epi - divJ):.1e} "
        f"(L = D - A IS the Kirchhoff operator)"
    )
    print()
    eigs = np.linalg.eigvalsh(L)
    moments = spectral_moments(L)
    print(
        f"  {'k':>3} {'Tr(L^k)=sum lambda^k':>21} {'Tr(L^k)=tr(L^k)':>17} "
        f"{'|diff|':>8}"
    )
    for k in range(5):
        m_spec = float(np.sum(eigs**k))
        print(
            f"  {k:>3} {m_spec:>21.4f} {moments[k]:>17.4f} "
            f"{abs(m_spec - moments[k]):>8.1e}"
        )
    print()
    print("  truncated short-time series  Z(t) ~ sum (-t)^k/k! Tr(L^k):")
    for t in [0.001, 0.005, 0.02]:
        Z_exact = float(np.sum(np.exp(-t * eigs)))
        Z_series = sum(((-t) ** k) / math.factorial(k) * moments[k] for k in range(5))
        print(
            f"    t={t:>6.3f}:  Z_exact={Z_exact:.6f}  series={Z_series:.6f}"
            f"  |diff|={abs(Z_exact - Z_series):.1e}"
        )
    print()
    print("  -> the heat trace is generated by the spectral moments Tr(L^k)")
    print("     (the discrete Minakshisundaram-Pleijel expansion).")


def experiment_2_hearing_the_geometry():
    """M2: the moments hear nodes / edges / triangles (closed walks)."""
    print()
    print("=" * 74)
    print("M2: THE MOMENTS HEAR THE GEOMETRY (closed-walk counts)")
    print("=" * 74)
    G = nx.watts_strogatz_graph(40, 6, 0.15, seed=1)
    nodes, L, A, deg = kirchhoff_laplacian(G)
    moments = spectral_moments(L)
    n, m = G.number_of_nodes(), G.number_of_edges()
    tri = sum(nx.triangles(G).values()) // 3
    sum_d2 = float(np.sum(deg**2))
    print("  Kirchhoff Laplacian L = D - A:")
    print(f"    Tr(L^0) = {moments[0]:>7.0f}   <->  nodes  n  = {n} (volume)")
    print(
        f"    Tr(L^1) = {moments[1]:>7.0f}   <->  2m         = {2 * m} "
        f"(edges m = {m}, boundary)"
    )
    print(
        f"    Tr(L^2) = {moments[2]:>7.0f}   <->  2m + sum d^2 = "
        f"{2 * m + sum_d2:.0f}"
    )
    print()
    print("  canonical coupling matrix W = A (closed walks Tr(A^k)):")
    trA2 = float(np.trace(A @ A))
    trA3 = float(np.trace(A @ A @ A))
    print(f"    Tr(A^2) = {trA2:>7.0f}   <->  2m            = {2 * m} (edges)")
    print(
        f"    Tr(A^3) = {trA3:>7.0f}   <->  6 * #triangles = {6 * tri} "
        f"(triangles = curvature; networkx: {tri})"
    )
    print()
    print("  -> Tr(M^k) = weighted closed walks of length k; the heat trace")
    print("     hears volume (nodes), boundary (edges), curvature (triangles).")


def experiment_3_cannot_hear_the_shape():
    """M3: cospectral graphs -- identical heat traces, different geometry."""
    print()
    print("=" * 74)
    print("M3: 'CAN ONE HEAR THE SHAPE OF A DRUM?' -- NO (Kac 1966)")
    print("=" * 74)
    print("A cospectral non-isomorphic pair has identical heat traces (all")
    print("Tr(L^k) equal) yet different local geometry.")
    print()
    graphs = [
        g for g in nx.graph_atlas_g() if g.number_of_nodes() == 6 and nx.is_connected(g)
    ]
    for Ga, Gb in itertools.combinations(graphs, 2):
        La = nx.laplacian_matrix(Ga).toarray().astype(float)
        Lb = nx.laplacian_matrix(Gb).toarray().astype(float)
        la = np.sort(np.linalg.eigvalsh(La))
        lb = np.sort(np.linalg.eigvalsh(Lb))
        if np.allclose(la, lb, atol=1e-9) and not nx.is_isomorphic(Ga, Gb):
            ta = sum(nx.triangles(Ga).values()) // 3
            tb = sum(nx.triangles(Gb).values()) // 3
            da = sorted(d for _, d in Ga.degree())
            db = sorted(d for _, d in Gb.degree())
            print(
                f"  cospectral pair on 6 nodes (both {Ga.number_of_edges()} " f"edges):"
            )
            print(f"    shared L-spectrum = {np.round(la, 4)}")
            print(
                f"    {'Tr(L^k):':>12} "
                + "  ".join(
                    f"k={k}:{np.trace(np.linalg.matrix_power(La, k)):.0f}"
                    for k in range(4)
                )
            )
            print(
                f"    {'(graph B):':>12} "
                + "  ".join(
                    f"k={k}:{np.trace(np.linalg.matrix_power(Lb, k)):.0f}"
                    for k in range(4)
                )
            )
            print(
                f"    BUT triangles differ: {ta} vs {tb}; "
                f"degree sequences {da} vs {db}"
            )
            break
    print()
    print("  -> identical heat traces (all coefficients), yet non-isomorphic with")
    print("     DIFFERENT triangle counts: the degree sequence and the triangle")
    print("     count conspire to the same spectral moments. The heat-kernel")
    print("     coefficients are invariants but NOT complete -- you cannot")
    print("     always hear the shape.")


def main():
    print()
    print("  ===============================================================")
    print("  The Heat-Kernel Coefficients: Hearing the Network's Geometry")
    print("  The Discrete Minakshisundaram-Pleijel Expansion")
    print("  ===============================================================")
    print()
    experiment_1_moments_are_coefficients()
    experiment_2_hearing_the_geometry()
    experiment_3_cannot_hear_the_shape()
    print()
    print("=" * 74)
    print("WHAT THIS ESTABLISHES")
    print("=" * 74)
    print("The short-time heat trace Z(t) = Tr(e^{-t L}) of the canonical Kirchhoff")
    print("operator is a Taylor series whose coefficients are the spectral moments")
    print("Tr(L^k) (M1, machine precision) -- the discrete Minakshisundaram-Pleijel")
    print("expansion. These moments are weighted closed-walk counts that HEAR the")
    print("geometry: nodes (volume), edges (boundary), triangles (curvature, via")
    print("Tr(A^3) = 6*#triangles) (M2). But they are NOT a complete invariant: a")
    print("cospectral pair has identical heat traces yet different triangle counts")
    print("(M3) -- you cannot always hear the shape (Kac 1966). HONEST SCOPE: this")
    print("is standard spectral graph theory (heat-kernel coefficients = closed")
    print("walks), exact and provable, the celebrated Weyl law / drum problem; it")
    print("complements example 134 (long-time spectral dimension). Not new")
    print("mathematics, closes no open problem.")


if __name__ == "__main__":
    main()