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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: examples/08_emergent_geometry/154_conductor_annotated_qr_spectrum.py

154_conductor_annotated_qr_spectrum.py

Example 154 — Conductor-Annotated QR Spectrum: Factorized Count and Scalar Wall

Examples 119 and 120 established the phase-sector fact: the canonical structural diffusion operator on the directed quadratic-residue Cayley graph has exactly three distinct complex eigenvalues precisely for odd primes, while the per-node substrate remains blind by vertex-transitivity. Example 153 (07_number_theory) measures the structural-frequency RANK and the cyclotomy law.

This example adds the arithmetic refinement needed after the scalar/global investigation: the clean multiplicative object is not the unannotated scalar count alone. It is the conductor-annotated distinct-value count

text
#{(F_m(k), gcd(k,m)) : k mod m},  with m odd,

where F_m(k) is the Fourier sum of the nonzero quadratic residues modulo m. For m = Product_i p_i^e_i this count factors exactly as

text
Product_i (e_i + ceiling(e_i/2) + 1).

This is the multiplicative A(m) of the engine (tnfr.mathematics.number_theory.quadratic_residue_annotated_rank); the example verifies the spectral conductor-annotated count against that closed form and exhibits the scalar wall where the unannotated projection collides.

Doctrine compliance

This example CONSUMES the canonical residue-network API (quadratic_residue_set, residue_network_rank, quadratic_residue_annotated_rank) and the canonical structural_diffusion_operator (through residue_network_rank). The exact CRT counterexample arithmetic (local Gauss-sum values in the multiquadratic field) is example-specific and mirrors publish/quadratic-residue-digraph-spectrum/proof_note.md.

Measured results

R1 PHASE PRIME SIGNATURE. For odd m in [5,119], the FFT spectrum and the canonical operator (residue_network_rank) have the same distinct-count signature on sampled moduli, and "3 distinct scalar values" detects odd primes on the full sweep.

R2 CONDUCTOR-ANNOTATED PRODUCT. For odd m in [3,119], the conductor-annotated count equals quadratic_residue_annotated_rank(m) = Product_i (e_i + ceiling(e_i/2) + 1). Prime powers give the local ladder 3, 4, 6, 7, 9, 10, 12, ...

R3 SCALAR WALL. The unannotated scalar product rule is false globally: m = 3^7 * 5^2 * 41^2 has product count 192 but exact scalar count 191. The conductor/gcd annotation separates the colliding states and restores the exact product count 192.

Honest scope

This is a compact bridge between the TNFR phase-sector examples and the OEIS arithmetic sequence. It does not introduce a faster factorization algorithm, does not derive the primes, does not close the Riemann obstruction, and does not claim the scalar count is multiplicative. The result is a precise structural classification: the phase spectrum detects primality locally, the conductor-annotated count factors globally, and the scalar projection can lose information through CRT collisions.

References

  • examples/08_emergent_geometry/119_phase_sector_directed_residue.py
  • examples/08_emergent_geometry/120_symmetry_wall_substrate_vs_spectrum.py
  • examples/07_number_theory/153_structural_frequency_rank_cyclotomy.py
  • src/tnfr/mathematics/number_theory.py (quadratic_residue_annotated_rank)
  • publish/quadratic-residue-digraph-spectrum/proof_note.md

Source Code

python
#!/usr/bin/env python3
"""
Example 154 — Conductor-Annotated QR Spectrum: Factorized Count and Scalar Wall
================================================================================

Examples 119 and 120 established the phase-sector fact: the canonical
structural diffusion operator on the directed quadratic-residue Cayley graph has
exactly three distinct complex eigenvalues precisely for odd primes, while the
per-node substrate remains blind by vertex-transitivity. Example 153
(07_number_theory) measures the structural-frequency RANK and the cyclotomy law.

This example adds the arithmetic refinement needed after the scalar/global
investigation: the clean multiplicative object is not the unannotated scalar
count alone.  It is the conductor-annotated distinct-value count

    #{(F_m(k), gcd(k,m)) : k mod m},  with m odd,

where F_m(k) is the Fourier sum of the nonzero quadratic residues modulo m.
For m = Product_i p_i^e_i this count factors exactly as

    Product_i (e_i + ceiling(e_i/2) + 1).

This is the multiplicative A(m) of the engine
(``tnfr.mathematics.number_theory.quadratic_residue_annotated_rank``); the
example verifies the spectral conductor-annotated count against that closed form
and exhibits the scalar wall where the unannotated projection collides.

Doctrine compliance
-------------------
This example CONSUMES the canonical residue-network API
(``quadratic_residue_set``, ``residue_network_rank``,
``quadratic_residue_annotated_rank``) and the canonical
``structural_diffusion_operator`` (through ``residue_network_rank``). The exact
CRT counterexample arithmetic (local Gauss-sum values in the multiquadratic
field) is example-specific and mirrors
``publish/quadratic-residue-digraph-spectrum/proof_note.md``.

Measured results
----------------
R1 PHASE PRIME SIGNATURE.  For odd m in [5,119], the FFT spectrum and the
   canonical operator (``residue_network_rank``) have the same distinct-count
   signature on sampled moduli, and "3 distinct scalar values" detects odd
   primes on the full sweep.

R2 CONDUCTOR-ANNOTATED PRODUCT.  For odd m in [3,119], the conductor-annotated
   count equals ``quadratic_residue_annotated_rank(m)`` =
   Product_i (e_i + ceiling(e_i/2) + 1).  Prime powers give the local ladder
   3, 4, 6, 7, 9, 10, 12, ...

R3 SCALAR WALL.  The unannotated scalar product rule is false globally:
   m = 3^7 * 5^2 * 41^2 has product count 192 but exact scalar count 191.
   The conductor/gcd annotation separates the colliding states and restores
   the exact product count 192.

Honest scope
------------
This is a compact bridge between the TNFR phase-sector examples and the OEIS
arithmetic sequence.  It does not introduce a faster factorization algorithm,
does not derive the primes, does not close the Riemann obstruction, and does
not claim the scalar count is multiplicative.  The result is a precise
structural classification: the phase spectrum detects primality locally, the
conductor-annotated count factors globally, and the scalar projection can lose
information through CRT collisions.

References
----------
- examples/08_emergent_geometry/119_phase_sector_directed_residue.py
- examples/08_emergent_geometry/120_symmetry_wall_substrate_vs_spectrum.py
- examples/07_number_theory/153_structural_frequency_rank_cyclotomy.py
- src/tnfr/mathematics/number_theory.py (quadratic_residue_annotated_rank)
- publish/quadratic-residue-digraph-spectrum/proof_note.md
"""

from __future__ import annotations

import math
import os
import sys
from fractions import Fraction
from itertools import product
from math import prod

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

import numpy as np
from sympy import factorint, isprime

from tnfr.mathematics.number_theory import (
    quadratic_residue_annotated_rank,
    quadratic_residue_set,
    residue_network_rank,
)

COUNTEREXAMPLE_FACTORS = [(3, 7), (5, 2), (41, 2)]


def normalized_fft_spectrum(modulus: int) -> np.ndarray:
    """Return the row-normalized diffusion spectrum of the QR circulant."""
    residues = quadratic_residue_set(modulus)
    first_row = np.zeros(modulus, dtype=complex)
    for residue in residues:
        first_row[residue] = 1.0
    return 1.0 - (np.fft.fft(first_row) / len(residues))


def complex_key(value: complex, decimals: int = 8) -> tuple[float, float]:
    """Rounded key for stable distinct-value counting."""
    return (round(float(value.real), decimals), round(float(value.imag), decimals))


def scalar_spectrum_count(modulus: int) -> int:
    """Count distinct unannotated scalar spectrum values."""
    return len({complex_key(value) for value in normalized_fft_spectrum(modulus)})


def conductor_annotated_count(modulus: int) -> int:
    """Count distinct pairs (spectrum value, gcd(character, modulus))."""
    return len(
        {
            (complex_key(value), math.gcd(character, modulus))
            for character, value in enumerate(normalized_fft_spectrum(modulus))
        }
    )


def local_values(
    prime: int, exponent: int
) -> list[tuple[str, tuple[Fraction, Fraction]]]:
    """Return exact local values as a + b*sqrt(epsilon*p)."""
    active_layers = [
        layer for layer in range(1, exponent + 1) if layer % 2 == exponent % 2
    ]
    values: list[tuple[str, tuple[Fraction, Fraction]]] = []

    for valuation_depth in range(exponent):
        rational_base = Fraction(1, 1) + sum(
            Fraction((prime - 1) * prime ** (layer - 1), 2)
            for layer in active_layers
            if layer <= valuation_depth
        )
        if valuation_depth + 1 in active_layers:
            rational_part = rational_base - Fraction(prime**valuation_depth, 2)
            sqrt_part = Fraction(prime**valuation_depth, 2)
            values.append((f"b{valuation_depth}+", (rational_part, sqrt_part)))
            values.append((f"b{valuation_depth}-", (rational_part, -sqrt_part)))
        else:
            values.append((f"b{valuation_depth}", (rational_base, Fraction(0, 1))))

    zero_character_value = Fraction(1, 1) + sum(
        Fraction((prime - 1) * prime ** (layer - 1), 2) for layer in active_layers
    )
    values.append(("zero", (zero_character_value, Fraction(0, 1))))

    distinct_values: list[tuple[str, tuple[Fraction, Fraction]]] = []
    seen = set()
    for label, value in values:
        if value not in seen:
            seen.add(value)
            distinct_values.append((label, value))
    return distinct_values


def local_value_items(
    prime: int, exponent: int
) -> list[tuple[str, tuple[Fraction, Fraction], int]]:
    """Return exact local values with their p-adic conductor depth."""
    active_layers = [
        layer for layer in range(1, exponent + 1) if layer % 2 == exponent % 2
    ]
    items: list[tuple[str, tuple[Fraction, Fraction], int]] = []

    for valuation_depth in range(exponent):
        rational_base = Fraction(1, 1) + sum(
            Fraction((prime - 1) * prime ** (layer - 1), 2)
            for layer in active_layers
            if layer <= valuation_depth
        )
        if valuation_depth + 1 in active_layers:
            rational_part = rational_base - Fraction(prime**valuation_depth, 2)
            sqrt_part = Fraction(prime**valuation_depth, 2)
            items.append(
                (f"b{valuation_depth}+", (rational_part, sqrt_part), valuation_depth)
            )
            items.append(
                (f"b{valuation_depth}-", (rational_part, -sqrt_part), valuation_depth)
            )
        else:
            items.append(
                (
                    f"b{valuation_depth}",
                    (rational_base, Fraction(0, 1)),
                    valuation_depth,
                )
            )

    zero_character_value = Fraction(1, 1) + sum(
        Fraction((prime - 1) * prime ** (layer - 1), 2) for layer in active_layers
    )
    items.append(("zero", (zero_character_value, Fraction(0, 1)), exponent))
    return items


def multiply_by_local_value(
    element: dict[int, Fraction],
    local_value: tuple[Fraction, Fraction],
    factor_index: int,
    radicand: int,
) -> dict[int, Fraction]:
    """Multiply a multiquadratic element by a local quadratic-field value."""
    rational_part, sqrt_part = local_value
    factor_bit = 1 << factor_index
    result: dict[int, Fraction] = {}

    for basis_mask, coefficient in element.items():
        if rational_part:
            result[basis_mask] = result.get(basis_mask, Fraction(0, 1)) + (
                coefficient * rational_part
            )
        if sqrt_part:
            if basis_mask & factor_bit:
                next_mask = basis_mask ^ factor_bit
                next_coefficient = coefficient * sqrt_part * radicand
            else:
                next_mask = basis_mask | factor_bit
                next_coefficient = coefficient * sqrt_part
            result[next_mask] = result.get(next_mask, Fraction(0, 1)) + next_coefficient

    return {
        basis_mask: coefficient
        for basis_mask, coefficient in result.items()
        if coefficient
    }


def exact_scalar_product_count(
    factors: list[tuple[int, int]],
) -> tuple[
    int, list[tuple[tuple[tuple[int, Fraction], ...], list[tuple], list[tuple]]]
]:
    """Count distinct global scalar products exactly."""
    radicands = [prime if prime % 4 == 1 else -prime for prime, _ in factors]
    local_value_sets = [local_values(prime, exponent) for prime, exponent in factors]
    seen: dict[tuple[tuple[int, Fraction], ...], list[tuple]] = {}
    collisions = []

    for local_choice in product(*local_value_sets):
        element = {0: Fraction(1, 1)}
        diagnostic_label = []
        for factor_index, (
            (label, local_value),
            (prime, exponent),
            radicand,
        ) in enumerate(zip(local_choice, factors, radicands)):
            element = multiply_by_local_value(
                element, local_value, factor_index, radicand
            )
            diagnostic_label.append((prime, exponent, label, local_value))

        product_key = tuple(sorted(element.items()))
        if product_key in seen and seen[product_key] != diagnostic_label:
            collisions.append((product_key, seen[product_key], diagnostic_label))
        else:
            seen[product_key] = diagnostic_label

    return len(seen), collisions


def exact_conductor_annotated_product_count(factors: list[tuple[int, int]]) -> int:
    """Count exact products after retaining the global conductor depth."""
    radicands = [prime if prime % 4 == 1 else -prime for prime, _ in factors]
    local_item_sets = [
        local_value_items(prime, exponent) for prime, exponent in factors
    ]
    seen = set()

    for local_choice in product(*local_item_sets):
        element = {0: Fraction(1, 1)}
        conductor_depth = 1
        for factor_index, (
            (_label, local_value, valuation_depth),
            (prime, _exponent),
            radicand,
        ) in enumerate(zip(local_choice, factors, radicands)):
            element = multiply_by_local_value(
                element, local_value, factor_index, radicand
            )
            conductor_depth *= prime**valuation_depth
        seen.add((tuple(sorted(element.items())), conductor_depth))

    return len(seen)


def experiment_phase_prime_signature() -> None:
    """Check the phase-sector prime signature and canonical agreement."""
    print("=" * 78)
    print("EXPERIMENT 1: Phase-sector prime signature")
    print("=" * 78)

    prime_signature_mismatches = [
        modulus
        for modulus in range(5, 120, 2)
        if (scalar_spectrum_count(modulus) == 3) != isprime(modulus)
    ]
    canonical_samples = [7, 9, 11, 15, 25, 29, 49]
    canonical_mismatches = [
        modulus
        for modulus in canonical_samples
        if residue_network_rank(modulus, "quadratic") != scalar_spectrum_count(modulus)
    ]

    print(
        f"  odd m in [5,119]: scalar_count(m)=3 iff prime: "
        f"{58 - len(prime_signature_mismatches)}/58"
    )
    print("  canonical operator sample check:")
    print(f"    {'m':>4} {'factorization':>16} {'FFT count':>10} {'TNFR count':>10}")
    for modulus in canonical_samples:
        print(
            f"    {modulus:>4} {str(dict(factorint(modulus))):>16} "
            f"{scalar_spectrum_count(modulus):>10} "
            f"{residue_network_rank(modulus, 'quadratic'):>10}"
        )
    print()

    if prime_signature_mismatches or canonical_mismatches:
        raise AssertionError(
            "Unexpected phase-signature or canonical-operator mismatch"
        )


def experiment_annotated_product() -> None:
    """Check the conductor-annotated product formula on a small sweep."""
    print("=" * 78)
    print("EXPERIMENT 2: Conductor-annotated count factors exactly")
    print("=" * 78)

    annotated_mismatches = [
        modulus
        for modulus in range(3, 120, 2)
        if conductor_annotated_count(modulus)
        != quadratic_residue_annotated_rank(modulus)
    ]
    print(
        f"  odd m in [3,119]: annotated_count(m)=A(m): "
        f"{59 - len(annotated_mismatches)}/59"
    )
    print("  local ladder for m=3^e:")
    print(f"    {'e':>2} {'m':>5} {'scalar':>8} {'annotated':>10} {'A(m)':>8}")
    for exponent in range(1, 8):
        modulus = 3**exponent
        print(
            f"    {exponent:>2} {modulus:>5} {scalar_spectrum_count(modulus):>8} "
            f"{conductor_annotated_count(modulus):>10} "
            f"{quadratic_residue_annotated_rank(modulus):>8}"
        )
    print()

    if annotated_mismatches:
        raise AssertionError("Unexpected conductor-annotated product mismatch")


def experiment_scalar_wall() -> None:
    """Show the first known scalar/product collision and annotated repair."""
    print("=" * 78)
    print("EXPERIMENT 3: Scalar projection has CRT collisions")
    print("=" * 78)

    modulus = prod(prime**exponent for prime, exponent in COUNTEREXAMPLE_FACTORS)
    predicted = quadratic_residue_annotated_rank(modulus)
    exact_scalar, collisions = exact_scalar_product_count(COUNTEREXAMPLE_FACTORS)
    exact_annotated = exact_conductor_annotated_product_count(COUNTEREXAMPLE_FACTORS)

    print(f"  m = {modulus} = 3^7 * 5^2 * 41^2")
    print(f"  product formula count A(m):     {predicted}")
    print(f"  exact unannotated scalar count: {exact_scalar}")
    print(f"  exact conductor-annotated count:{exact_annotated}")
    print("  collision witness:")
    print("    11 * 1 * 821 = 821 * 11 * 1 = 9031")
    print("    the scalar value collides, but the gcd/conductor depths differ")
    print()

    if (
        predicted != 192
        or exact_scalar != 191
        or exact_annotated != 192
        or not collisions
    ):
        raise AssertionError("Unexpected scalar-wall counterexample result")


def main() -> None:
    print()
    print("TNFR Example 154: Conductor-annotated QR spectrum")
    print("Phase prime signature, exact product count, and scalar CRT wall")
    print()
    experiment_phase_prime_signature()
    experiment_annotated_product()
    experiment_scalar_wall()
    print("=" * 78)
    print("STRUCTURAL READING")
    print("=" * 78)
    print("  The phase spectrum detects odd primes through the directed QR graph.")
    print("  The conductor annotation retains the local support depth and factors.")
    print("  The scalar projection can alias distinct CRT-local states, so it is")
    print("  the wrong object for a global product theorem.")
    print()


if __name__ == "__main__":
    main()