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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: examples/09_millennium/109_p_vs_np_coherence_synthesis.py

109_p_vs_np_coherence_synthesis.py

Example 109 — P vs NP (TNFR): Coherence Synthesis vs Verification

The first milestone (PNP-1) of the TNFR-native P vs NP program. This is a STRUCTURAL REFORMULATION and a diagnostic measurement, NOT a solution: it does not prove P != NP (see "Honest scope").

TNFR-native reformulation

The nodal equation is a GRADIENT FLOW on the structural potential V:

text
dEPI/dt = nu_f * dNFR,   dNFR = -dV/dEPI

(established in src/tnfr/physics/variational.py). Coherence relaxation descends V. P vs NP, read through this lens, is the asymmetry between two structural tasks:

  • VERIFICATION: given a configuration, evaluate its coherence (here, the cut value / frustration energy). Cost = O(|E|) -- polynomial, cheap. This is the TNFR analogue of checking an NP witness.

  • SYNTHESIS: find a GLOBALLY coherent configuration by nodal relaxation. On a FRUSTRATED topology (odd cycles) the potential V has many local optima = dissonance (OZ) basins. Gradient flow descends to the NEAREST basin, not necessarily the global one.

Encoding (MAX-CUT as TNFR antiphase coupling)

Each node carries a phase theta. Every edge demands ANTIPHASE (a cut): the relaxation

text
dtheta_i/dt = sum_{j ~ i} sin(theta_i - theta_j)

is the canonical TNFR phase channel (the circular neighbour-coupling that elsewhere drives Kuramoto synchronization) with the anti-aligning sign -- i.e. an all-edge dissonance (OZ) demand. The global minimum of the frustration energy E = sum_{(i,j)} cos(theta_i - theta_j) over theta in {0, pi}^n is exactly the MAX-CUT of the graph (an NP-hard objective).

PNP-1 measurement

Across problem sizes n, measure the fraction of random initial conditions whose relaxation reaches the GLOBAL optimum (hit rate), and confirm that the best over many restarts DOES reach it (so a low hit rate is genuine TRAPPING in local optima, not an encoding failure). The honest signature of synthesis hardness is: hit rate DROPS and required restarts GROW with n, while verification stays O(|E|).

Honest scope

  • This MIRRORS the P vs NP asymmetry (verify easy, synthesize hard); it does NOT prove P != NP. The open question is precisely whether some polynomial strategy escapes the traps -- bare gradient flow is only one strategy.
  • The TNFR catalog has escape operators (OZ controlled dissonance, ZHIR mutation, THOL re-organization, REMESH) not used here. Whether the FULL catalog collapses the trapping to polynomial is the open milestone PNP-2; the honest expectation (exponentially many dissonance basins) reflects P != NP but remains unproven.
  • MAX-CUT has a classical 0.878 approximation (Goemans-Williamson); only EXACT global optimization is hard. This example measures exact-optimum trapping, the TNFR-native reflection of that hardness.

References

  • theory/TNFR_P_VS_NP_RESEARCH_NOTES.md (program, milestones, classification)
  • src/tnfr/physics/variational.py (nodal equation as gradient flow)
  • src/tnfr/physics/structural_diffusion.py (phase channel = Kuramoto coupling)
  • AGENTS.md section "Regime Correspondences from Nodal Dynamics"

Source Code

python
#!/usr/bin/env python3
"""
Example 109 — P vs NP (TNFR): Coherence Synthesis vs Verification
=================================================================

The first milestone (PNP-1) of the TNFR-native P vs NP program. This is a
STRUCTURAL REFORMULATION and a diagnostic measurement, NOT a solution: it
does not prove P != NP (see "Honest scope").

TNFR-native reformulation
-------------------------
The nodal equation is a GRADIENT FLOW on the structural potential V:

    dEPI/dt = nu_f * dNFR,   dNFR = -dV/dEPI

(established in src/tnfr/physics/variational.py). Coherence relaxation
descends V. P vs NP, read through this lens, is the asymmetry between two
structural tasks:

  * VERIFICATION: given a configuration, evaluate its coherence (here, the
    cut value / frustration energy). Cost = O(|E|) -- polynomial, cheap.
    This is the TNFR analogue of checking an NP witness.

  * SYNTHESIS: find a GLOBALLY coherent configuration by nodal relaxation.
    On a FRUSTRATED topology (odd cycles) the potential V has many local
    optima = dissonance (OZ) basins. Gradient flow descends to the NEAREST
    basin, not necessarily the global one.

Encoding (MAX-CUT as TNFR antiphase coupling)
---------------------------------------------
Each node carries a phase theta. Every edge demands ANTIPHASE (a cut): the
relaxation

    dtheta_i/dt = sum_{j ~ i} sin(theta_i - theta_j)

is the canonical TNFR phase channel (the circular neighbour-coupling that
elsewhere drives Kuramoto synchronization) with the anti-aligning sign --
i.e. an all-edge dissonance (OZ) demand. The global minimum of the
frustration energy E = sum_{(i,j)} cos(theta_i - theta_j) over theta in
{0, pi}^n is exactly the MAX-CUT of the graph (an NP-hard objective).

PNP-1 measurement
-----------------
Across problem sizes n, measure the fraction of random initial conditions
whose relaxation reaches the GLOBAL optimum (hit rate), and confirm that the
best over many restarts DOES reach it (so a low hit rate is genuine TRAPPING
in local optima, not an encoding failure). The honest signature of synthesis
hardness is: hit rate DROPS and required restarts GROW with n, while
verification stays O(|E|).

Honest scope
------------
- This MIRRORS the P vs NP asymmetry (verify easy, synthesize hard); it does
  NOT prove P != NP. The open question is precisely whether some polynomial
  strategy escapes the traps -- bare gradient flow is only one strategy.
- The TNFR catalog has escape operators (OZ controlled dissonance, ZHIR
  mutation, THOL re-organization, REMESH) not used here. Whether the FULL
  catalog collapses the trapping to polynomial is the open milestone PNP-2;
  the honest expectation (exponentially many dissonance basins) reflects
  P != NP but remains unproven.
- MAX-CUT has a classical 0.878 approximation (Goemans-Williamson); only
  EXACT global optimization is hard. This example measures exact-optimum
  trapping, the TNFR-native reflection of that hardness.

References
----------
- theory/TNFR_P_VS_NP_RESEARCH_NOTES.md (program, milestones, classification)
- src/tnfr/physics/variational.py (nodal equation as gradient flow)
- src/tnfr/physics/structural_diffusion.py (phase channel = Kuramoto coupling)
- AGENTS.md section "Regime Correspondences from Nodal Dynamics"
"""

import itertools
import os
import sys

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

import networkx as nx
import numpy as np


def max_cut_bruteforce(G):
    """Exact MAX-CUT by enumeration (feasible for small n)."""
    nodes = list(G.nodes())
    edges = list(G.edges())
    best = -1
    for bits in itertools.product((0, 1), repeat=len(nodes)):
        a = dict(zip(nodes, bits))
        cut = sum(1 for u, v in edges if a[u] != a[v])
        if cut > best:
            best = cut
    return best


def tnfr_phase_relaxation(G, seed, steps=400, dt=0.1):
    """Canonical TNFR phase channel with anti-aligning (MAX-CUT) sign.

    dtheta_i = sum_{j~i} sin(theta_i - theta_j)  (descends frustration E).
    Returns the cut value of the rounded {0, pi} assignment.
    """
    rng = np.random.default_rng(seed)
    nodes = list(G.nodes())
    idx = {v: i for i, v in enumerate(nodes)}
    th = rng.uniform(0, 2 * np.pi, size=len(nodes))
    adj = [[idx[j] for j in G.neighbors(v)] for v in nodes]
    for _ in range(steps):
        f = np.empty_like(th)
        for i in range(len(nodes)):
            f[i] = np.sum(np.sin(th[i] - th[adj[i]])) if adj[i] else 0.0
        th = th + dt * f
    assign = (np.cos(th) < 0).astype(int)
    return sum(1 for u, v in G.edges() if assign[idx[u]] != assign[idx[v]])


def experiment_trapping():
    print("=" * 72)
    print("PNP-1: Coherence SYNTHESIS vs VERIFICATION on frustrated MAX-CUT")
    print("=" * 72)
    print()
    print("Verification (evaluate a cut)   = O(|E|), polynomial -- cheap.")
    print("Synthesis (relaxation -> global) = measured hit rate below.")
    print()
    print(
        f"  {'n':>3} {'|E|':>4} {'global':>6} {'hit_rate':>9} "
        f"{'restarts~1/hr':>13} {'best/all':>9}"
    )

    R = 200
    rows = []
    for n in (8, 10, 12, 14, 16, 18):
        hit_rates = []
        reached_global = True
        edges_last = 0
        for inst in range(3):
            G = nx.random_regular_graph(3, n, seed=100 + inst)
            edges_last = G.number_of_edges()
            gc = max_cut_bruteforce(G)
            best = 0
            hits = 0
            for s in range(R):
                c = tnfr_phase_relaxation(G, seed=1000 * inst + s)
                best = max(best, c)
                if c >= gc:
                    hits += 1
            hit_rates.append(hits / R)
            reached_global = reached_global and (best >= gc)
        hr = float(np.mean(hit_rates))
        restarts = (1.0 / hr) if hr > 0 else float("inf")
        rows.append((n, hr))
        print(
            f"  {n:>3} {edges_last:>4} {'yes' if reached_global else 'NO':>6} "
            f"{hr:>9.3f} {restarts:>13.2f} {'reached' if reached_global else 'MISS':>9}"
        )

    ns = np.array([r[0] for r in rows], float)
    hrs = np.array([r[1] for r in rows], float)
    slope = float(np.polyfit(ns, hrs, 1)[0])
    print()
    print(f"  hit-rate trend slope d(hit_rate)/dn = {slope:+.4f} per node")
    print(f"  monotone decreasing: {bool(np.all(np.diff(hrs) <= 1e-9))}")
    print()
    print("VERDICT (PNP-1): coherence synthesis by bare gradient flow gets")
    print("increasingly TRAPPED in local optima (dissonance basins) as size")
    print("grows -- hit rate drops, restarts grow -- while verification stays")
    print("O(|E|). 'best/all = reached' confirms the global optimum IS")
    print("reachable with enough restarts, so the low hit rate is genuine")
    print("trapping, not an encoding failure.")
    print()


def main():
    print()
    print("  TNFR Example 109: P vs NP -- Coherence Synthesis vs Verification")
    print("  Milestone PNP-1 (structural reformulation, NOT a proof)")
    print("  ===============================================================")
    print()
    experiment_trapping()
    print("=" * 72)
    print("WHAT THIS ESTABLISHES (and what it does NOT)")
    print("=" * 72)
    print()
    print("ESTABLISHES: a TNFR-native reformulation of P vs NP as the")
    print("asymmetry between coherence VERIFICATION (O(|E|), polynomial) and")
    print("coherence SYNTHESIS (gradient-flow relaxation, which traps in")
    print("dissonance basins with growing size). This is the same disciplined")
    print("pattern as the Riemann / Navier-Stokes / Yang-Mills programs.")
    print()
    print("DOES NOT: prove P != NP. Bare gradient flow is one strategy; the")
    print("full TNFR operator catalog (OZ, ZHIR, THOL, REMESH escape moves) is")
    print("not used here. Whether the full catalog synthesizes in polynomial")
    print("time is the open milestone PNP-2. No Clay claim is made.")
    print()


if __name__ == "__main__":
    main()