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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: factorization-lab/README.md

README.md

TNFR Spectral Factorization Lab

Purpose

This lab bootstraps the TNFR factorization program. It mirrors the structure of the existing primality-test/ package but focuses on recovering factors rather than on binary primality decisions. The guiding principle is the Ruta espectral: Paley gap + TNFR, where spectral rigidity in arithmetic graphs reveals the factor structure of (n).

Theoretical foundation: theory/TNFR_NUMBER_THEORY.md §6 (Pressure Decomposition), §7 (Arithmetic Tetrad), §8 (Dual-Lever), §9 (Spectral Factorization), §12 (Implementation Map), and theory/APPLIED_STRUCTURAL_ANALYSIS.md (verification protocols).

Why Paley graphs + TNFR?

Recent arithmetic graph results show that the second Laplacian eigenvalue ((\lambda_2)) of Paley-type graphs becomes rigid when (n) is prime and drifts significantly for composite (n). This aligns with TNFR physics:

  • TNFR networks already analyze coherence spectra. Primes behave as maximally stable patterns (ΔNFR = 0). Composites fragment across resonant submodules.
  • Paley graphs provide the spectral substrate where residues (x^2 \bmod n) generate a naturally harmonic network. Spectral deviations encode the hidden factors.
  • TNFR operators (UM, RA, IL, OZ, THOL) can be mapped to graph manipulations that highlight coherent clusters associated with multiples of (p), (q), etc.

Proposed Algorithm

  1. Arithmetic Graph Constructor (tnfr_factorization.spectral_paley)

    • Build Paley / quadratic residue graphs for modulus (n).
    • Allow alternative TNFR-friendly graphs (Cayley, resonance lattices).
  2. Spectral-TNFR Analyzer

    • Compute Laplacian/adjacency spectra, especially (\lambda_2) and associated eigenvectors.
    • Translate eigenvectors into TNFR observables: Φ_s, |∇φ|, K_φ, ξ_C, Si, ΔNFR.
    • Detect coherence gaps that indicate submodules tied to factors.
  3. Factor Recovery Pipeline

    • Cluster nodes using TNFR operator sequences (e.g., [UM, RA, IL]).
    • Map cluster periodicities to candidate factors via modular consistency checks.
    • Iterate with controlled destabilizers (OZ, ZHIR) to refine guesses.
  4. Certification & Telemetry

    • Produce TNFR-style certificates describing spectral evidence, coherence metrics, and candidate factors.
    • Each certificate now links to per-partition provenance files (emitted under results/certificates/partitioned/) so replay tools can recover the candidate list, telemetry, and structural coverage for every partition.
    • Integrate with existing telemetry dashboards so factorization shares infrastructure with primality testing.

Repository Layout

text
factorization-lab/
├── README.md                  # This file (concept + motivation)
├── PACKAGE_SUMMARY.md         # High-level deliverables and status
├── pyproject.toml             # Minimal package metadata (placeholder)
├── docs/
│   ├── SPECTRAL_ROUTE.md      # Detailed Paley gap research notes
│   └── ROADMAP.md             # Milestones for field experiments
└── tnfr_factorization/
    ├── __init__.py            # Namespace init
    └── spectral_paley.py      # Prototype scaffolding

Current Capabilities

the quadratic-residue graph, and routes the Laplacian spectrum through the canonical TNFRAdvancedFFTEngine, so eigenbases are cached by the shared spectral coordinator. component pressures, and local coherence are computed via the canonical parameters and cached with cache_tnfr_computation, aligning spectral hints with nodal physics. coherence length, and candidate factors are derived via ΔNFR-aware gcd probes. replayed; the history forms the nucleus for notebooks/tests.

Command-line usage

The lab now exposes a thin CLI built directly on SpectralPaleyFactorizer so you can request TNFR factorization runs from a shell session without writing scripts:

bash
python -m tnfr_factorization.cli 234234

This prints the Paley modulus, tetrad proxies, ΔNFR telemetry, and any candidate factors. Add --json to receive machine-friendly output, or provide several numbers in a single invocation to batch analyses while reusing FFT caches.

To route analyses through the distributed FFT backend without writing Python, add the dispatcher tuning switches:

bash
python -m tnfr_factorization.cli 221 \
  --fft-backend distributed \
  --dispatcher-workers 4 \
  --dispatcher-timeout 30 \
  --dispatcher-serializer pickle

These knobs configure the in-process ThreadedQueueDispatcher so you can experiment with different worker counts, queue timeouts, and serialization codecs directly from the CLI.

To point the CLI at an HTTP dispatcher (e.g., a GPU or cluster service), provide the endpoint and optional bearer token:

bash
python -m tnfr_factorization.cli 221 \
  --fft-backend distributed \
  --fft-dispatcher https://fft.example.org/api \
  --dispatcher-http-token tnfr-secret

Every invocation now prints explicit fft_backend, dispatcher, partition_artifacts, and partition_manifest lines so you can capture the backend context alongside the factoring telemetry. When --json is enabled, the same information is available under the dispatcher_telemetry, partition_artifact_dir, and partition_manifest_path keys. Runs that produce many partitions (>1k by default) now emit a _manifest_summary.json index and compress the raw partition file listing into _partition_files.txt.gz. The summary path is reported via partition_manifest_index_path (and partition_manifest_index inside certificates) while the optional archive is exposed through partition_file_archive_path. Tune the inline listing threshold with TNFR_PARTITION_FILELIST_THRESHOLD if you prefer a different cutoff.

python
from tnfr_factorization import SpectralPaleyFactorizer

factorizer = SpectralPaleyFactorizer()
result = factorizer.analyze(221)

print(result.candidate_factors)      # → [13, 17]
print(result.arithmetic_delta_nfr)   # Canonical ΔNFR(n) — §5-6
print(result.phi_s, result.phase_gradient, result.coherence_length)

# Pressure decomposition (§6)
print(result.arithmetic_components)
# → {'factorization_pressure': ..., 'divisor_pressure': ..., 'sigma_pressure': ...}

# Dual-lever analysis (§8)
print(result.dual_lever_analysis)
# → {'classification': 'pressure-dominated', 'pressure_lever': {...}, ...}

# Conservation proxies (Noether charge, Lyapunov energy)
print(result.arithmetic_epi, result.arithmetic_nu_f)

The high-level factorize() API exposes the same enriched telemetry:

python
from tnfr_factorization import factorize

r = factorize(221)
print(r.telemetry["pressure_components"])    # §6 decomposition
print(r.telemetry["noether_charge_proxy"])   # Q = Φ_s + K_φ
print(r.telemetry["energy_proxy"])           # E = 0.5·(Φ_s² + |∇φ|² + K_φ²)
print(r.telemetry["dual_lever"])             # §8 classification

Full-spectrum benchmark & automation

  • benchmarks/full_spectrum_factorization.py sweeps semiprimes, triprimes, prime powers, and highly composite numbers (default set) and records the complete tetrad telemetry (Φ_s, |∇φ|, K_φ, ξ_C) for every parent state and partition. Each run marks the nodal decoder output and embeds the operator-strategy plan so factor provenance is fully reproducible.

  • The script emits results/benchmarks/full_spectrum_factorization.json with per-target traces plus a category summary, while trace_certificates=True ensures enriched certificates (partition states + invariant report) land in results/certificates/.

  • Run it directly:

    bash
    python factorization-lab/benchmarks/full_spectrum_factorization.py
    # optional extra numbers
    python factorization-lab/benchmarks/full_spectrum_factorization.py --numbers 1729 2187
  • Or use the root shortcut:

    bash
    make factorization-full-spectrum

This benchmark/automation pass is now the canonical way to regenerate certificates and strategy plans for any batch of targets inside the repository.

FFT backend & dispatcher selection

Set the following environment variables to activate the distributed FFT backend and choose a dispatcher:

bash
# Queue-backed local worker pool (default ThreadedQueueDispatcher)
export TNFR_FFT_BACKEND=distributed
export TNFR_FFT_DISPATCHER=queue

# Remote HTTP service with bearer authentication
export TNFR_FFT_BACKEND=distributed
export TNFR_FFT_DISPATCHER=https://fft.example.org/api
export TNFR_FFT_AUTH_TOKEN=tnfr-secret

Dispatcher selection matrix

DeploymentCLI flag(s)EnvironmentTelemetry snapshot
Local queue(default) or --fft-dispatcher queueTNFR_FFT_DISPATCHER=queuetype=queue, source=cli, max_workers=4, serializer=pickle
HTTP(S) endpoint--fft-dispatcher https://fft.example.org/api --dispatcher-http-token tokenTNFR_FFT_DISPATCHER=https://..., TNFR_FFT_AUTH_TOKEN=...type=http, source=cli, base_url=https://..., token_provided=True
Custom callable--fft-dispatcher local:package.module:build_dispatcherTNFR_FFT_DISPATCHER=local:package.module:build_dispatcher (or package.module:factory)type=callable, source=cli, target=package.module:build_dispatcher

The CLI and JSON outputs expose the telemetry row verbatim so downstream tooling can prove exactly which dispatcher handled a run. Callable dispatchers should return a function with the signature (action: str, payload: Dict[str, Any]) -> Any, matching the queue and HTTP adapters.

When TNFR_FFT_DISPATCHER=queue, the factorizer instantiates a ThreadedQueueDispatcher. You can customize it directly if you need extra worker threads or serialization hooks. The CLI flags shown earlier provide the same control surface without editing environment variables; the Python example below still works when you need to embed the dispatcher in a larger application:

python
from tnfr.dynamics.fft_dispatchers import ThreadedQueueDispatcher
from tnfr.dynamics.distributed_fft import DistributedFFTEngine

dispatcher = ThreadedQueueDispatcher(max_workers=4)
engine = DistributedFFTEngine(dispatcher=dispatcher.dispatch)
factorizer = SpectralPaleyFactorizer(fft_engine=engine)

For HTTP endpoints, implement a web service that accepts POST requests with base64-pickled payloads (payload key). The server returns the encoded spectral result in the same format, allowing you to plug GPU clusters or managed queues into TNFR factorization without changing application code.

Theory Integration (v0.0.3.2)

The factorization-lab now integrates the full TNFR number-theoretic stack:

Theory sectionCode integrationModule
§5 Nodal EquationArithmeticTNFRFormalism — EPI, νf per integernumber_theory.py
§6 Pressure Decompositioncomponent_breakdown() — factorization, divisor, sigma pressuresspectral_paley.py
§7 Arithmetic TetradRecalibrated thresholds (Φ_s<0.7452, |∇φ|<0.2591, K_φ<3.2275)spectral_paley.py
§8 Dual-Lever_classify_dual_lever() — capacity vs pressure operator classificationspectral_paley.py
§9 Spectral Factorization8-criterion Paley-Jacobi verificationspectral_paley.py
ConservationNoether charge proxy (Q=Φ_s+K_φ), Lyapunov energy proxyapi.py telemetry

Cross-repo synergies:

  • src/tnfr/mathematics/number_theory.py — Canonical ΔNFR formula, arithmetic formalism
  • src/tnfr/physics/conservation.py — Structural conservation theorem (proxy values used here)
  • src/tnfr/physics/fields.py — Structural Field Tetrad computation
  • theory/TNFR_NUMBER_THEORY.md — Canonical theoretical reference (14 sections)
  • theory/STRUCTURAL_OPERATORS.md §17 — Operator-Tetrad synergies and dual-lever structure

Next Steps

  1. Complex field Ψ integration: Compute Ψ = K_φ + i·J_φ on Paley graphs for unified geometric-transport analysis.
  2. Full conservation integration: Bridge Paley graph structure to full compute_noether_charge() / compute_energy_functional() (currently proxy values).
  3. Grammar-aware partition sequencing: Apply GrammarAwareDynamics to partition operator chains for U1-U6 compliance.
  4. Publish preliminary results (spectral plots, factor recovery success rates).

For Zenodo-oriented packaging guidance and publication checklists, see ZENODO_PUBLICATION_GUIDE.md in this directory; it mirrors the structure of the primality-test/ assets so release work can proceed without reinventing the process.

Reproducibility artifacts live under benchmarks/ and results/benchmarks/. Run python benchmarks/paley_gap_smoke.py (or inspect the generated paley_gap_smoke.json) to review the Paley gap telemetry referenced by notebooks/spectral_history.ipynb Section 7. The extended dataset in benchmarks/paley_gap_extended.py produces paley_gap_extended.json, which captures larger moduli (≈500–1,400) and demonstrates that the updated factor-recovery heuristics surface the true prime factors for each target.

Release-ready bundles must include the artifacts tracked in ZENODO_RELEASE_NOTES.md. Publishers should copy LICENSE_SNAPSHOT.md alongside the archives to satisfy Zenodo's licensing policy and attach the generated dist/sha256.txt checksum file described in ZENODO_PUBLICATION_GUIDE.md.

Operator-sequence certificate design notes are maintained with the certificate tooling in this lab. They outline how future releases will prove factor claims via canonical sequences (e.g., [AL, UM, RA, IL, SHA, THOL, NAV]) so gcd corroboration becomes supportive rather than primary evidence.

Contributions should follow the TNFR standards described in AGENTS.md, TNFR_RIEMANN RESEARCH_NOTES.md, and docs/STRUCTURAL_FIELDS_TETRAD.md. All documentation remains in English to preserve canonical terminology.