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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: factorization-lab/tests/test_seed_management.py

test_seed_management.py

Test Suite for TNFR Seed Management System

Validates seed capture, restoration, reproducibility, and experiment context management. Tests hierarchical seeding, cross-platform compatibility, and integrity verification.

Source Code

python
"""
Test Suite for TNFR Seed Management System

Validates seed capture, restoration, reproducibility, and experiment context management.
Tests hierarchical seeding, cross-platform compatibility, and integrity verification.
"""

import os
import random
import sys
import tempfile
import time
import unittest
from pathlib import Path

import numpy as np

sys.path.append(str(Path(__file__).parent.parent))

from seed_management import (
    ExperimentParameters,
    RandomSeedState,
    ReproducibilityMetadata,
    SystemEnvironment,
    TNFRSeedManager,
    create_demo_experiment_params,
)


class TestSeedManagerCore(unittest.TestCase):
    """Test core seed manager functionality."""

    def setUp(self):
        """Set up test seed manager."""
        self.seed_manager = TNFRSeedManager(master_seed=12345)

    def test_deterministic_initialization(self):
        """Test deterministic initialization from master seed."""

        # Create two managers with same master seed
        manager1 = TNFRSeedManager(master_seed=999)
        manager2 = TNFRSeedManager(master_seed=999)

        # Should have identical derived seeds
        self.assertEqual(manager1.global_network_seed, manager2.global_network_seed)
        self.assertEqual(
            manager1.node_initialization_seed, manager2.node_initialization_seed
        )
        self.assertEqual(
            manager1.coupling_dynamics_seed, manager2.coupling_dynamics_seed
        )
        self.assertEqual(
            manager1.spectral_analysis_seed, manager2.spectral_analysis_seed
        )

    def test_master_seed_generation(self):
        """Test master seed generation is reasonable."""

        # Test without providing seed
        manager = TNFRSeedManager()

        self.assertIsInstance(manager.master_seed, int)
        self.assertGreater(manager.master_seed, 0)
        self.assertLess(manager.master_seed, 2**31)

        # Multiple generations should be different
        manager2 = TNFRSeedManager()
        self.assertNotEqual(manager.master_seed, manager2.master_seed)

    def test_seeded_random_generators(self):
        """Test seeded random generator creation."""

        # Test Python random
        rng1 = self.seed_manager.get_seeded_random("node_initialization")
        rng2 = self.seed_manager.get_seeded_random("node_initialization")

        # Should be independent but reproducible
        self.assertEqual(rng1.random(), rng2.random())

        # Different seed types should be different
        coupling_rng = self.seed_manager.get_seeded_random("coupling_dynamics")
        self.assertNotEqual(rng1.random(), coupling_rng.random())

        # Test NumPy random
        np_rng1 = self.seed_manager.get_seeded_numpy_random("spectral_analysis")
        np_rng2 = self.seed_manager.get_seeded_numpy_random("spectral_analysis")

        # Should generate identical sequences
        seq1 = np_rng1.random(5)
        seq2 = np_rng2.random(5)
        np.testing.assert_array_equal(seq1, seq2)

    def test_invalid_seed_type(self):
        """Test handling of invalid seed types."""

        with self.assertRaises(ValueError):
            self.seed_manager.get_seeded_random("invalid_seed_type")

        with self.assertRaises(ValueError):
            self.seed_manager.get_seeded_numpy_random("another_invalid_type")


class TestStateCapture(unittest.TestCase):
    """Test state capture and restoration."""

    def setUp(self):
        """Set up test environment."""
        self.seed_manager = TNFRSeedManager(master_seed=54321)

    def test_state_capture_completeness(self):
        """Test complete state capture includes all components."""

        state = self.seed_manager.capture_complete_state()

        # Check required top-level keys
        self.assertIn("environment", state)
        self.assertIn("seed_state", state)
        self.assertIn("capture_timestamp", state)
        self.assertIn("master_seed", state)

        # Check environment components
        env = state["environment"]
        self.assertIn("platform_system", env)
        self.assertIn("python_version", env)
        self.assertIn("numpy_version", env)
        self.assertIn("process_id", env)

        # Check seed state components
        seeds = state["seed_state"]
        self.assertIn("master_seed", seeds)
        self.assertIn("python_random_state", seeds)
        self.assertIn("numpy_random_state", seeds)
        self.assertIn("node_initialization_seed", seeds)
        self.assertIn("spectral_analysis_seed", seeds)

    def test_state_restoration(self):
        """Test state restoration preserves randomness."""

        # Capture initial state
        initial_state = self.seed_manager.capture_complete_state()

        # Generate some random numbers
        random.seed(self.seed_manager.master_seed)
        original_sequence = [random.random() for _ in range(5)]

        # Modify random state
        random.seed(99999)
        modified_sequence = [random.random() for _ in range(5)]

        # Should be different
        self.assertNotEqual(original_sequence, modified_sequence)

        # Restore state
        success = self.seed_manager.restore_complete_state(initial_state)
        self.assertTrue(success)

        # Generate sequence again - should match original
        restored_sequence = [random.random() for _ in range(5)]

        # Check if sequences match (allowing small floating point differences)
        for orig, restored in zip(original_sequence, restored_sequence):
            self.assertAlmostEqual(orig, restored, places=15)

    def test_state_restoration_failure_handling(self):
        """Test graceful handling of invalid state data."""

        # Test with malformed state data
        invalid_states = [
            {},  # Empty dict
            {"master_seed": 123},  # Missing components
            {"seed_state": "not_a_dict"},  # Wrong types
        ]

        for invalid_state in invalid_states:
            success = self.seed_manager.restore_complete_state(invalid_state)
            self.assertFalse(success)


class TestExperimentContext(unittest.TestCase):
    """Test experiment context creation and management."""

    def setUp(self):
        """Set up test environment."""
        self.seed_manager = TNFRSeedManager(master_seed=11111)
        self.test_params = create_demo_experiment_params(143)

        # Use temporary directory for contexts
        self.temp_dir = tempfile.mkdtemp(prefix="test_contexts_")
        self.original_cwd = os.getcwd()
        os.chdir(self.temp_dir)

    def tearDown(self):
        """Clean up test files."""
        os.chdir(self.original_cwd)
        import shutil

        shutil.rmtree(self.temp_dir, ignore_errors=True)

    def test_experiment_context_creation(self):
        """Test experiment context creation and storage."""

        experiment_id = self.seed_manager.create_experiment_context(self.test_params)

        # Should generate valid experiment ID
        self.assertIsInstance(experiment_id, str)
        self.assertTrue(experiment_id.startswith("exp_"))
        self.assertEqual(len(experiment_id), 16)  # exp_ + 12 hex chars

        # Should create context file
        context_file = Path("experiment_contexts") / f"{experiment_id}.json"
        self.assertTrue(context_file.exists())

        # Should be able to load context
        import json

        with open(context_file, "r") as f:
            context_data = json.load(f)

        self.assertIn("metadata", context_data)
        self.assertIn("parameters", context_data)
        self.assertIn("reproducibility_state", context_data)

    def test_experiment_id_uniqueness(self):
        """Test experiment ID generation produces unique IDs."""

        # Create multiple experiments
        ids = []
        for i in range(10):
            # Slight parameter variation to ensure uniqueness
            params = create_demo_experiment_params(100 + i)
            exp_id = self.seed_manager.create_experiment_context(params)
            ids.append(exp_id)

        # All IDs should be unique
        self.assertEqual(len(ids), len(set(ids)))

    def test_experiment_context_loading(self):
        """Test loading experiment context."""

        # Create experiment
        experiment_id = self.seed_manager.create_experiment_context(self.test_params)

        # Load context
        context_data = self.seed_manager._load_experiment_context(experiment_id)

        self.assertIsNotNone(context_data)
        self.assertEqual(
            context_data["parameters"]["modulus_n"], self.test_params.modulus_n
        )
        self.assertEqual(
            context_data["parameters"]["partition_strategy"],
            self.test_params.partition_strategy,
        )

        # Test loading non-existent context
        missing_context = self.seed_manager._load_experiment_context("exp_nonexistent")
        self.assertIsNone(missing_context)


class TestReproducibilityValidation(unittest.TestCase):
    """Test reproducibility validation functionality."""

    def setUp(self):
        """Set up test environment."""
        self.seed_manager = TNFRSeedManager(master_seed=77777)
        self.test_params = create_demo_experiment_params(91)

        # Use temporary directory
        self.temp_dir = tempfile.mkdtemp(prefix="test_repro_")
        self.original_cwd = os.getcwd()
        os.chdir(self.temp_dir)

    def tearDown(self):
        """Clean up test files."""
        os.chdir(self.original_cwd)
        import shutil

        shutil.rmtree(self.temp_dir, ignore_errors=True)

    def test_reproducibility_validation_success(self):
        """Test reproducibility validation with consistent results."""

        # Create experiment context
        experiment_id = self.seed_manager.create_experiment_context(self.test_params)

        # Validate reproducibility
        validation_result = self.seed_manager.validate_reproducibility(
            experiment_id, test_iterations=3
        )

        self.assertIn("valid", validation_result)
        self.assertIn("test_iterations", validation_result)
        self.assertIn("consistency_score", validation_result)
        self.assertIn("results", validation_result)

        # Should be valid and consistent
        self.assertTrue(validation_result["valid"])
        self.assertEqual(validation_result["test_iterations"], 3)
        self.assertAlmostEqual(validation_result["consistency_score"], 1.0, places=6)

        # Results should be identical
        results = validation_result["results"]
        self.assertEqual(len(results), 3)

        # Check first result structure
        first_result = results[0]
        self.assertIn("final_coherence", first_result)
        self.assertIn("sense_index", first_result)
        self.assertIn("verification_confidence", first_result)

        # All results should be identical
        for i in range(1, len(results)):
            for key in first_result:
                self.assertAlmostEqual(first_result[key], results[i][key], places=15)

    def test_reproducibility_validation_missing_experiment(self):
        """Test validation with missing experiment context."""

        validation_result = self.seed_manager.validate_reproducibility(
            "exp_nonexistent"
        )

        self.assertFalse(validation_result["valid"])
        self.assertIn("error", validation_result)


class TestDataStructures(unittest.TestCase):
    """Test data structure creation and validation."""

    def test_experiment_parameters_creation(self):
        """Test ExperimentParameters dataclass creation."""

        params = create_demo_experiment_params(35)

        # Check required fields
        self.assertEqual(params.modulus_n, 35)
        self.assertIsInstance(params.partition_strategy, str)
        self.assertIsInstance(params.node_count, int)
        self.assertGreater(params.node_count, 0)

        # Check ranges
        self.assertIsInstance(params.coupling_strength_range, tuple)
        self.assertEqual(len(params.coupling_strength_range), 2)
        self.assertLess(
            params.coupling_strength_range[0], params.coupling_strength_range[1]
        )

        # Check boolean flags
        self.assertIsInstance(params.adaptive_threshold_enabled, bool)
        self.assertIsInstance(params.feedback_learning_enabled, bool)

    def test_random_seed_state_structure(self):
        """Test RandomSeedState has all required components."""

        # Create mock seed state
        seed_state = RandomSeedState(
            python_random_state=(1, tuple(range(625)), None),
            numpy_random_state={
                "generator": "MT19937",
                "state": list(range(625)),
                "pos": 0,
                "has_gauss": 0,
                "cached_gaussian": None,
            },
            master_seed=12345,
            node_initialization_seed=23456,
            coupling_dynamics_seed=34567,
            phase_evolution_seed=45678,
            operator_sequence_seed=56789,
            global_network_seed=67890,
            partition_level_seed=78901,
            node_level_seed=89012,
            spectral_analysis_seed=90123,
            clustering_seed=1234,
            threshold_jitter_seed=5678,
        )

        # Check all seeds are present and positive
        self.assertGreater(seed_state.master_seed, 0)
        self.assertGreater(seed_state.node_initialization_seed, 0)
        self.assertGreater(seed_state.coupling_dynamics_seed, 0)
        self.assertGreater(seed_state.spectral_analysis_seed, 0)

        # Check hierarchical seeds
        self.assertGreater(seed_state.global_network_seed, 0)
        self.assertGreater(seed_state.partition_level_seed, 0)
        self.assertGreater(seed_state.node_level_seed, 0)


class TestHierarchicalSeeding(unittest.TestCase):
    """Test hierarchical seeding functionality."""

    def test_seed_hierarchy_independence(self):
        """Test different seed types produce independent sequences."""

        seed_manager = TNFRSeedManager(master_seed=33333)

        # Get different seeded generators
        node_rng = seed_manager.get_seeded_random("node_initialization")
        coupling_rng = seed_manager.get_seeded_random("coupling_dynamics")
        spectral_rng = seed_manager.get_seeded_numpy_random("spectral_analysis")

        # Generate sequences
        node_seq = [node_rng.random() for _ in range(10)]
        coupling_seq = [coupling_rng.random() for _ in range(10)]
        spectral_seq = spectral_rng.random(10).tolist()

        # Sequences should be different
        self.assertNotEqual(node_seq, coupling_seq)
        self.assertNotEqual(node_seq, spectral_seq)
        self.assertNotEqual(coupling_seq, spectral_seq)

        # But reproducible from same seeds
        node_rng2 = seed_manager.get_seeded_random("node_initialization")
        node_seq2 = [node_rng2.random() for _ in range(10)]
        self.assertEqual(node_seq, node_seq2)

    def test_master_seed_determinism(self):
        """Test master seed completely determines all derived seeds."""

        master_seed = 88888

        # Create multiple managers with same master seed
        managers = [TNFRSeedManager(master_seed=master_seed) for _ in range(3)]

        # All derived seeds should be identical
        for i in range(1, len(managers)):
            self.assertEqual(
                managers[0].global_network_seed, managers[i].global_network_seed
            )
            self.assertEqual(
                managers[0].node_initialization_seed,
                managers[i].node_initialization_seed,
            )
            self.assertEqual(
                managers[0].coupling_dynamics_seed, managers[i].coupling_dynamics_seed
            )
            self.assertEqual(
                managers[0].spectral_analysis_seed, managers[i].spectral_analysis_seed
            )


def run_seed_management_tests():
    """Run all seed management system tests."""

    # Create test suite
    loader = unittest.TestLoader()
    suite = unittest.TestSuite()

    # Add test classes
    suite.addTests(loader.loadTestsFromTestCase(TestSeedManagerCore))
    suite.addTests(loader.loadTestsFromTestCase(TestStateCapture))
    suite.addTests(loader.loadTestsFromTestCase(TestExperimentContext))
    suite.addTests(loader.loadTestsFromTestCase(TestReproducibilityValidation))
    suite.addTests(loader.loadTestsFromTestCase(TestDataStructures))
    suite.addTests(loader.loadTestsFromTestCase(TestHierarchicalSeeding))

    # Run tests
    runner = unittest.TextTestRunner(verbosity=2)
    result = runner.run(suite)

    # Summary
    tests_run = result.testsRun
    failures = len(result.failures)
    errors = len(result.errors)

    print(f"\n" + "=" * 60)
    print(f"SEED MANAGEMENT SYSTEM TEST SUMMARY")
    print(f"=" * 60)
    print(f"Tests run: {tests_run}")
    print(f"Failures: {failures}")
    print(f"Errors: {errors}")
    print(f"Success rate: {((tests_run - failures - errors) / tests_run * 100):.1f}%")

    if failures == 0 and errors == 0:
        print("✅ All seed management system tests passed!")
        return True
    else:
        print("❌ Some tests failed - check output above")
        if failures > 0:
            print("\nFailures:")
            for test, traceback in result.failures:
                print(f"  - {test}: {traceback.split('AssertionError:')[-1].strip()}")
        if errors > 0:
            print("\nErrors:")
            for test, traceback in result.errors:
                print(f"  - {test}: {traceback.split('Exception:')[-1].strip()}")
        return False


if __name__ == "__main__":
    success = run_seed_management_tests()
    exit(0 if success else 1)