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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: factorization-lab/tests/test_spectral_paley.py

test_spectral_paley.py

Regression tests for the TNFR spectral factorization lab.

Source Code

python
"""Regression tests for the TNFR spectral factorization lab."""

from __future__ import annotations

import json
import pathlib
import sys
from dataclasses import dataclass
from typing import Any, Optional

import numpy as np
import pytest
from _pytest.monkeypatch import MonkeyPatch

# Ensure the lab package is importable when tests run from repo root
LAB_ROOT = pathlib.Path(__file__).resolve().parents[1]
if str(LAB_ROOT) not in sys.path:
    sys.path.insert(0, str(LAB_ROOT))

import tnfr_factorization.spectral_paley as sp  # type: ignore[import]  # noqa: E402
from tnfr_factorization import (  # type: ignore[import]  # noqa: E402
    SpectralPaleyFactorizer,
)

from tnfr.dynamics.fft_backend import (  # type: ignore[import]  # noqa: E402
    FFTBackendCapabilities,
)


@dataclass
class _StubSpectralState:
    eigenvalues: np.ndarray
    coherence_length: float


class _RecordingFFTEngine:
    """Minimal stand-in for TNFRAdvancedFFTEngine that records calls."""

    backend_name = "tests.recording_fft"

    def __init__(self, coherence_length: float = 3.0) -> None:
        self.coherence_length = coherence_length
        self.calls = 0
        self.last_node_count: Optional[int] = None

    def get_spectral_state(
        self, graph: Any, force_recompute: bool = False
    ) -> _StubSpectralState:  # noqa: D401
        self.calls += 1
        self.last_node_count = graph.number_of_nodes()
        count = self.last_node_count or 1
        eigenvalues = np.linspace(0.0, 1.0, count, dtype=float)
        return _StubSpectralState(
            eigenvalues=eigenvalues, coherence_length=self.coherence_length
        )

    def get_capabilities(self) -> FFTBackendCapabilities:
        return FFTBackendCapabilities(
            backend_name=self.backend_name,
            max_nodes=2048,
            precision="float32",
            supports_distributed=False,
            extra={"testing": True},
        )

    def spectral_convolution(self, *args: Any, **kwargs: Any) -> Any:
        raise NotImplementedError("convolution not needed in tests")


def test_fft_enabled_path_uses_engine_and_reports_coherence_length() -> None:
    engine = _RecordingFFTEngine(coherence_length=5.5)
    factorizer = SpectralPaleyFactorizer(fft_engine=engine)
    result = factorizer.analyze(37)
    assert result.laplacian_gap >= 0.0
    assert result.fft_backend == _RecordingFFTEngine.backend_name
    assert result.fft_capabilities and result.fft_capabilities["max_nodes"] == 2048
    assert result.partition_summary and result.partition_summary["partition_count"] >= 1
    assert result.partition_aggregation
    assert result.partition_aggregation["partition_count"] >= 1
    assert "partition_candidates" in result.partition_aggregation
    assert result.operator_strategy_plan
    assert result.operator_strategy_plan["per_partition"]


def test_partition_env_controls_size(monkeypatch: MonkeyPatch) -> None:
    monkeypatch.setenv("TNFR_PARTITION_TARGET_SIZE", "5")
    monkeypatch.setenv("TNFR_PARTITION_OVERLAP", "1")

    engine = _RecordingFFTEngine(coherence_length=4.0)
    factorizer = SpectralPaleyFactorizer(fft_engine=engine)

    result = factorizer.analyze(61)

    assert result.partition_summary
    assert result.partition_summary["partition_count"] > 1
    assert result.partition_aggregation
    assert result.partition_aggregation["phi_s_ratio"] > 0.0
    if result.candidate_factors:
        assert result.partition_aggregation["candidate_total"] == len(
            result.candidate_factors
        )
    assert "partition_candidates" in result.partition_aggregation
    assert result.operator_strategy_plan
    per_partition = result.operator_strategy_plan["per_partition"]
    assert len(per_partition) == result.partition_summary["partition_count"]


def test_nodal_decoder_derives_partition_factors(monkeypatch: MonkeyPatch) -> None:
    monkeypatch.setenv("TNFR_PARTITION_TARGET_SIZE", "13")
    monkeypatch.setenv("TNFR_PARTITION_OVERLAP", "0")

    factorizer = SpectralPaleyFactorizer()
    result = factorizer.analyze(221)

    decoding = result.nodal_decoding
    assert decoding, "nodal decoding metadata should be present"
    assert decoding["sequence"] == ["UM", "RA", "IL", "THOL"]
    assert (
        13 in decoding["dynamic_factors"]
    ), "partition sequence should surface factor 13"
    assert 13 in result.candidate_factors
    partitions = decoding.get("partitions", [])
    assert any(entry.get("inferred_factor") == 13 for entry in partitions)
    assert result.tnfr_certified_factors
    assert 13 in result.tnfr_certified_factors
    assert result.tnfr_verification
    assert 13 in result.tnfr_verification.get("certified", [])
    assert result.tnfr_factor_signature
    assert 13 in result.tnfr_factor_signature.get("certified", [])
    assert result.partition_aggregation
    assert result.partition_aggregation["candidate_total"] == len(
        result.candidate_factors
    )


def test_arithmetic_cache_invoked_once(monkeypatch: MonkeyPatch) -> None:
    call_count = {"count": 0}

    cache_clear = getattr(sp._compute_arithmetic_telemetry, "cache_clear", None)
    if callable(cache_clear):
        cache_clear()

    def _fake_prime_factorization(n: int) -> dict[int, int]:
        call_count["count"] += 1
        return {7: 1, 11: 1}

    monkeypatch.setattr(sp, "_prime_factorization", _fake_prime_factorization)

    factorizer = SpectralPaleyFactorizer()

    target = 899
    first = factorizer.analyze(target)
    second = factorizer.analyze(target)

    assert call_count["count"] == 1
    # Verify the mocked factorization influenced arithmetic telemetry (τ = 4 for 7·11)
    assert first.arithmetic_terms.tau == 4
    assert first.arithmetic_terms == second.arithmetic_terms
    assert first.candidate_factors == second.candidate_factors
    assert pytest.approx(first.arithmetic_delta_nfr) == second.arithmetic_delta_nfr


def test_certificate_emission_obeys_grammar(
    tmp_path: pathlib.Path, monkeypatch: MonkeyPatch
) -> None:
    partition_root = tmp_path / "partition_outputs"
    monkeypatch.setenv("TNFR_PARTITION_OUTPUT_DIR", str(partition_root))
    monkeypatch.setenv("TNFR_PARTITION_TARGET_SIZE", "13")
    monkeypatch.setenv("TNFR_PARTITION_OVERLAP", "0")

    factorizer = SpectralPaleyFactorizer()

    result = factorizer.analyze(
        221,
        trace_certificates=True,
        certificate_dir=tmp_path,
    )

    certificate_files = list(tmp_path.glob("certificate_*.json"))
    assert certificate_files, "Expected a certificate JSON file"
    certificate_path = certificate_files[0]
    payload = json.loads(certificate_path.read_text())

    assert (
        payload["candidate_factor"] in result.candidate_factors
        or payload["candidate_factor"] is None
    )

    assert payload.get("canonical_operators")
    optimizer_block = payload.get("optimizer")
    assert optimizer_block and optimizer_block.get("recommended_strategies") is not None

    validation_block = payload.get("validation")
    assert validation_block and validation_block.get("passed") is True
    assert validation_block.get("canonical_tokens")
    outcome = sp._validate_operator_sequence(payload["operators"])  # type: ignore[arg-type]
    assert outcome.passed
    partition_block = payload.get("partitions")
    assert partition_block, "Certificate must include partition provenance"
    aggregation_block = partition_block.get("aggregation")
    assert aggregation_block and "candidate_total" in aggregation_block
    candidates_by_partition = aggregation_block.get("partition_candidates")
    assert isinstance(candidates_by_partition, dict)
    partition_states = payload.get("partition_states")
    assert partition_states, "Certificate must include per-partition states"
    sample_state = next(iter(partition_states.values()))
    assert "before" in sample_state and "after" in sample_state
    assert payload.get("strategy_plan_snapshot")
    invariant_report = payload.get("invariant_report")
    assert invariant_report and invariant_report.get("grammar_rules")
    assert "U1" in invariant_report["grammar_rules"]
    nodal_snapshot = payload.get("nodal_decoding_snapshot")
    assert nodal_snapshot and nodal_snapshot.get("sequence") == [
        "UM",
        "RA",
        "IL",
        "THOL",
    ]
    tnfr_snapshot = payload.get("tnfr_verification_snapshot")
    assert tnfr_snapshot and tnfr_snapshot.get("criteria")
    signature_block = payload.get("tnfr_factor_signature")
    assert signature_block and signature_block.get("hash")
    assert payload.get("tnfr_factor_signature") == result.tnfr_factor_signature
    partition_files = payload.get("partition_files")
    assert partition_files, "Root certificate should reference partition files"
    partition_dir = pathlib.Path(result.partition_artifact_dir)
    assert partition_dir.exists()
    assert partition_dir.parent == partition_root
    assert payload.get("partition_directory") == partition_dir.as_posix()
    assert payload.get("partition_directory_absolute") == partition_dir.as_posix()
    for relative_path in partition_files:
        rel_obj = pathlib.Path(relative_path)
        part_path = rel_obj if rel_obj.is_absolute() else partition_dir / rel_obj.name
        assert part_path.exists()
        partition_payload = json.loads(part_path.read_text())
        assert partition_payload.get("partition_id")
        assert "candidate_factors" in partition_payload
    assert result.partition_artifact_dir
    manifest_relative = payload.get("partition_manifest")
    assert manifest_relative
    manifest_path = pathlib.Path(manifest_relative)
    if not manifest_path.is_absolute():
        manifest_path = partition_dir / manifest_path.name
    assert manifest_path.exists()
    manifest_payload = json.loads(manifest_path.read_text())
    assert len(manifest_payload.get("entries", [])) == len(partition_files)
    assert result.partition_manifest_path
    assert pathlib.Path(result.partition_manifest_path) == manifest_path


def test_env_preference_selects_distributed_backend(monkeypatch: MonkeyPatch) -> None:
    fake_backend = _RecordingFFTEngine()
    monkeypatch.setenv("TNFR_FFT_BACKEND", "distributed")
    monkeypatch.setattr(
        sp, "_instantiate_distributed_backend", lambda dispatcher: fake_backend
    )

    factorizer = SpectralPaleyFactorizer()

    assert factorizer._fft_backend is fake_backend


def test_http_dispatcher_loader(monkeypatch: MonkeyPatch) -> None:
    monkeypatch.setenv("TNFR_FFT_DISPATCHER", "http://unit.test/fft")
    monkeypatch.setenv("TNFR_FFT_AUTH_TOKEN", "token123")

    captured: dict[str, Any] = {}

    import tnfr.dynamics.fft_dispatchers as dispatchers

    class _FakeHTTPDispatcher:
        def __init__(self, base_url: str, auth_token: str | None = None) -> None:
            captured["base_url"] = base_url
            captured["auth_token"] = auth_token
            self.dispatch = lambda action, payload: {
                "action": action,
                "payload": payload,
            }

    monkeypatch.setattr(dispatchers, "HTTPFFTDispatcher", _FakeHTTPDispatcher)

    dispatcher = sp._load_fft_dispatcher()

    assert dispatcher is not None
    response = dispatcher("fft", {"value": 7})
    assert response["action"] == "fft"
    assert captured["base_url"].startswith("http://unit.test/fft")


def test_trial_division_fallback_engages(monkeypatch: MonkeyPatch) -> None:
    def _empty_candidates(**_: Any) -> list[int]:
        return []

    monkeypatch.setattr(sp, "_candidate_factors", _empty_candidates)

    factorizer = SpectralPaleyFactorizer()
    result = factorizer.analyze(185)

    assert {5, 37}.issubset(result.candidate_factors)
    assert "fallback=trial-division" in result.notes


def test_failure_telemetry_records_when_no_certification(
    monkeypatch: MonkeyPatch,
) -> None:
    """Ensure failure telemetry runs when TNFR verification certifies nothing."""

    monkeypatch.setenv("TNFR_FAILURE_TELEMETRY", "0")

    def _no_certification(*_: Any, **__: Any) -> tuple[list[int], dict[str, Any]]:
        return [], {"certified": [], "per_factor": {"p0": {"endorsement_ratio": 0.1}}}

    monkeypatch.setattr(sp, "_verify_factors_tnfr", _no_certification)

    factorizer = SpectralPaleyFactorizer()

    class _FakeRecord:
        def __init__(self, payload: dict[str, Any]) -> None:
            self._payload = payload

        def to_mapping(self) -> dict[str, Any]:
            return dict(self._payload)

    class _FakeTelemetryManager:
        def __init__(self) -> None:
            self.calls: list[dict[str, Any]] = []
            self.payload = {"run_id": "fake-run", "telemetry": "ok"}

        def record_failure(
            self, result: sp.SpectralAnalysisResult, **kwargs: Any
        ) -> _FakeRecord:
            entry = dict(kwargs)
            entry["result"] = result
            self.calls.append(entry)
            return _FakeRecord(self.payload)

    fake_manager = _FakeTelemetryManager()
    factorizer._failure_telemetry_manager = fake_manager

    result = factorizer.analyze(185)

    assert fake_manager.calls, "failure telemetry manager should record the attempt"
    call = fake_manager.calls[0]
    assert call["result"] is result
    assert call["failure_stage"] in {"spectral", "nodal_decoding", "verification"}
    assert call["failure_reason"]
    assert result.failure_diagnostics == fake_manager.payload


@pytest.mark.parametrize(
    ("n", "expected_factors"),
    (
        (185, {5, 37}),
        (221, {13, 17}),
        (899, {29, 31}),
        (385, {5, 7, 11}),
        (1001, {7, 11, 13}),
        (343, {7}),
        (625, {5}),
        (1331, {11}),
    ),
)
def test_factorizer_surfaces_true_factors(n: int, expected_factors: set[int]) -> None:
    factorizer = SpectralPaleyFactorizer(max_nodes=2049)
    result = factorizer.analyze(n)
    found = set(result.candidate_factors)
    missing = expected_factors - found
    assert not missing, f"Missing {missing} for n={n}; candidates={sorted(found)}"