TNFR Logo
TheoryLearnSoftwareResearch

On this page

TNFR

Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

About
  • Project history
  • Editorial policy
  • Contact
Resources
  • GitHub
  • PyPI
  • DOI · Zenodo
Legal
  • MIT License
  • Citation
© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
.pre-commit-config.yaml.semgrep.yaml.zenodo.jsonARCHITECTURE.mdbandit.yamlCHANGELOG.mdCITATION.cffCONTRIBUTING.mdEMERGENT_CANON_AUDIT.mdEMERGENT_DERIVATION_PLAN.mdLICENSE.mdMakefileMANIFEST.inpyproject.tomlpyrightconfig.jsonPYTORCH_CUDA_INTEGRATION.mdREADME.mdSECURITY.mdTESTING.mdTNFR_Website_Content_Brief.md
FILE: src/tnfr/config/defaults_core.py

defaults_core.py

Core constants.

AUDIT 2026: only π (the phase-wrap bound) is a genuine structural scale. The earlier φ/γ/e "tetrahedral correspondence" overlay was an anti-magic-number naming convention, NOT a derivation from the nodal equation; it has been removed and the thresholds below are plain calibrated parameters. ξ_C's scale is the spectral gap (1/√λ₂). See AGENTS.md §3 and CHANGELOG (tetrad correspondence audit).

Source Code

python
"""Core constants.

AUDIT 2026: only π (the phase-wrap bound) is a genuine structural scale. The
earlier φ/γ/e "tetrahedral correspondence" overlay was an anti-magic-number
naming convention, NOT a derivation from the nodal equation; it has been
removed and the thresholds below are plain calibrated parameters.
ξ_C's scale is the spectral gap (1/√λ₂). See AGENTS.md §3 and CHANGELOG (tetrad
correspondence audit).
"""

from __future__ import annotations

from dataclasses import asdict, field
from types import MappingProxyType
from typing import Any, Mapping

from ..compat.dataclass import dataclass
from ..constants.operational import MIN_BUSINESS_COHERENCE_CANONICAL
from .physics_derivation import derive_bifurcation_window_from_physics
from ..constants.canonical import (
    CHANNEL_WEIGHT_PRIMARY,
    CHANNEL_WEIGHT_SECONDARY,
    CHANNEL_WEIGHT_TERTIARY,
    COHERENCE_RETENTION,
    COUPLING_FINE,
    COUPLING_GENTLE,
    COUPLING_MODERATE,
    DISSONANCE_AMPLIFICATION,
    DOWN_CANONICAL,
    DT_CANONICAL,
    DT_MIN_CANONICAL,
    EN_MIX_FACTOR,
    EPI_MAX_CANONICAL,
    EPI_MIN_CANONICAL,
    GLYPH_SELECTOR_MARGIN_CANONICAL,
    GRAD_PHI_CANONICAL_THRESHOLD,
    HIGH_COHERENCE_THRESHOLD,
    INV_PI,
    K_PHI_CANONICAL_THRESHOLD,
    KL_MAX_CANONICAL,
    KL_MIN_CANONICAL,
    MID_COHERENCE_THRESHOLD,
    NUL_DENSIFICATION_FACTOR,
    NUL_SCALE_FACTOR,
    PI,
    SHA_VF_FACTOR,
    THOL_MIN_COLLECTIVE_COHERENCE,
    U6_STRUCTURAL_POTENTIAL_LIMIT,
    UM_COMPAT_THRESHOLD,
    UM_THETA_PUSH,
    UP_CANONICAL,
    VAL_BIFURCATION_THRESHOLD,
    VAL_MIN_COHERENCE,
    VAL_MIN_EPI,
    VAL_SCALE_FACTOR,
    VF_ADAPT_MU_CANONICAL,
    VF_MAX_CANONICAL,
    VF_MIN_CANONICAL,
)

# U6 Structural Potential Confinement Constants
# Grammar U6: Monitor Δ Φ_s < π/2 (U6 confinement bound)
STRUCTURAL_ESCAPE_THRESHOLD = (
    U6_STRUCTURAL_POTENTIAL_LIMIT  # π/2 (canonical U6 confinement bound)
)

SELECTOR_THRESHOLD_DEFAULTS: Mapping[str, float] = MappingProxyType(
    {
        "si_hi": 0.5,  # unit midpoint (Si selector upper)
        "si_lo": 0.25,  # unit quarter (Si selector lower)
        "dnfr_hi": 0.133,  # operational |ΔNFR| selector upper (pressure-magnitude scale, not coherence)
        "dnfr_lo": 0.068,  # operational |ΔNFR| selector lower (pressure-magnitude scale, not coherence)
        "accel_hi": 0.276,  # operational acceleration selector upper (∂²EPI scale, not coherence)
        "accel_lo": 0.114,  # operational acceleration selector lower (∂²EPI scale, not coherence)
    }
)


@dataclass(frozen=True, slots=True)
class CoreDefaults:
    """Default parameters for the core engine.

    The fields are exported via :data:`CORE_DEFAULTS` and may therefore appear
    unused to static analysis tools such as Vulture.
    """

    DT: float = DT_CANONICAL  # = 0.5 (stable explicit step)
    INTEGRATOR_METHOD: str = "euler"
    DT_MIN: float = DT_MIN_CANONICAL  # = 1/16 ≈ 0.0625 (minimal temporal resolution)
    EPI_MIN: float = EPI_MIN_CANONICAL  # = -1.0 (unit form bound)
    EPI_MAX: float = EPI_MAX_CANONICAL  # = 1.0 (unit form bound)
    VF_MIN: float = VF_MIN_CANONICAL  # 0.0 (canonical death state)
    VF_MAX: float = VF_MAX_CANONICAL  # = 2π ≈ 6.283 (νf max, one phase cycle)
    THETA_WRAP: bool = True
    CLIP_MODE: str = "hard"
    CLIP_SOFT_K: float = PI  # π ≈ 3.14159 (geometric steepness for smooth transitions)
    DNFR_WEIGHTS: dict[str, float] = field(
        default_factory=lambda: {
            # Coherence-band hierarchy (π-derived, exact-normalising): phase ≻ EPI ≻ νf.
            "phase": CHANNEL_WEIGHT_PRIMARY,  # π/(π+1) ≈ 0.7585 (dominant desync channel)
            "epi": CHANNEL_WEIGHT_SECONDARY,  # π/(π+1)² ≈ 0.1832 (diffusion channel)
            "vf": CHANNEL_WEIGHT_TERTIARY,  # 1/(π+1)² ≈ 0.0583 (capacity-gradient channel)
            "topo": 0.0,  # Topological weight remains zero (graph fixed during evolution)
        }
    )
    SI_WEIGHTS: dict[str, float] = field(
        default_factory=lambda: {
            # Same coherence-band hierarchy: νf-coherence ≻ phase-sync ≻ |ΔNFR|.
            "alpha": CHANNEL_WEIGHT_PRIMARY,  # π/(π+1) ≈ 0.7585 (νf-coherence)
            "beta": CHANNEL_WEIGHT_SECONDARY,  # π/(π+1)² ≈ 0.1832 (phase-sync)
            "gamma": CHANNEL_WEIGHT_TERTIARY,  # 1/(π+1)² ≈ 0.0583 (|ΔNFR|)
        }
    )
    PHASE_K_GLOBAL: float = 1.0 / (2.0 * PI * PI)  # 1/(2π²) ≈ 0.0507 (global phase coupling = local/π)
    PHASE_K_LOCAL: float = COUPLING_MODERATE  # 1/(2π) ≈ 0.159 (local phase coupling)
    PHASE_ADAPT: dict[str, Any] = field(
        default_factory=lambda: {
            "enabled": True,
            "R_hi": HIGH_COHERENCE_THRESHOLD,  # π/(π+1) ≈ 0.7585 (high-coherence gate)
            "R_lo": MID_COHERENCE_THRESHOLD,  # 2/π ≈ 0.6366 (mid-high coherence trigger)
            "disr_hi": 0.5,  # unit midpoint (dissonance upper bound)
            "disr_lo": round(1.0 / (PI + 1.0), 3),  # 1/(π+1) ≈ 0.241 (fragmentation)
            "kG_min": 1.0 / (8.0 * PI * PI),  # 1/(8π²) ≈ 0.0127 (global-coupling floor = local floor/π)
            "kG_max": COUPLING_MODERATE,  # 1/(2π) ≈ 0.159 (global-coupling ceiling)
            "kL_min": KL_MIN_CANONICAL,  # 1/(8π) ≈ 0.0398 (operational)
            "kL_max": KL_MAX_CANONICAL,  # = 1/(2π) ≈ 0.159 (coupling limit)
            "up": UP_CANONICAL,  # 1/(4π) ≈ 0.0796 (constrained increment)
            "down": DOWN_CANONICAL,  # 1/(2π) ≈ 0.159 (decrement)
        }
    )
    UM_COMPAT_THRESHOLD: float = (
        UM_COMPAT_THRESHOLD  # = π/(π+1) ≈ 0.7585 (high-coherence gate)
    )
    UM_CANDIDATE_MODE: str = "sample"
    UM_CANDIDATE_COUNT: int = 0
    GLYPH_HYSTERESIS_WINDOW: int = 7
    AL_MAX_LAG: int = 5
    EN_MAX_LAG: int = 3
    GLYPH_SELECTOR_MARGIN: float = (
        GLYPH_SELECTOR_MARGIN_CANONICAL  # ≈ 0.0418 (boundary precision)
    )
    VF_ADAPT_TAU: int = 5
    VF_ADAPT_MU: float = (
        VF_ADAPT_MU_CANONICAL  # = 0.10 (adaptation)
    )
    HZ_STR_BRIDGE: float = 1.0
    GLYPH_FACTORS: dict[str, float] = field(
        default_factory=lambda: {
            "AL_boost": COUPLING_GENTLE,  # 1/(4π) ≈ 0.0796 (gentle emission EPI increment)
            "EN_mix": EN_MIX_FACTOR,  # 1/(π+1) ≈ 0.2415 (canonical reception mixing)
            "IL_dnfr_factor": COHERENCE_RETENTION,  # π/(π+1) ≈ 0.7585 (coherence-band retention, stabiliser)
            "OZ_dnfr_factor": DISSONANCE_AMPLIFICATION,  # (π+1)/π ≈ 1.3183 (band-reciprocal amplification, destabiliser)
            "UM_theta_push": UM_THETA_PUSH,  # 1/(π+1) ≈ 0.2415 (canonical coupling phase push)
            "UM_vf_sync": COUPLING_GENTLE,  # 1/(4π) ≈ 0.0796 (gentle νf sync)
            "UM_dnfr_reduction": COUPLING_MODERATE,  # 1/(2π) ≈ 0.159 (ΔNFR reduction by coupling)
            "RA_epi_diff": COUPLING_MODERATE,  # 1/(2π) ≈ 0.159 (resonant EPI diffusion)
            "RA_vf_amplification": COUPLING_FINE,  # 1/(8π) ≈ 0.0398 (fine νf amplification)
            "RA_phase_coupling": COUPLING_GENTLE,  # 1/(4π) ≈ 0.0796 (phase alignment strengthening)
            "SHA_vf_factor": SHA_VF_FACTOR,  # 1 − 1/(4π) ≈ 0.9204 (silence νf step)
            "VAL_scale": VAL_SCALE_FACTOR,  # 1 + 1/(4π) ≈ 1.0796 (gentle νf expansion step)
            "NUL_scale": NUL_SCALE_FACTOR,  # 1 − 1/(4π) ≈ 0.9204 (gentle νf contraction step)
            # NUL ΔNFR densification = 1/λ (geometric volume ratio): contracting
            # ν_f/volume by λ=NUL_scale concentrates structural pressure by 1/λ.
            "NUL_densification_factor": NUL_DENSIFICATION_FACTOR,  # 1/λ ≈ 1.0865
            "THOL_accel": COUPLING_GENTLE,  # 1/(4π) ≈ 0.0796 (self-organisation acceleration)
            # ZHIR uses canonical transformation by default (θ → θ' based on ΔNFR);
            # the shift magnitude is 1/π, a θ-shift on the π-scaled phase sector.
            "ZHIR_theta_shift_factor": INV_PI,  # 1/π ≈ 0.318 (mutation θ-shift magnitude)
            "NAV_jitter": COUPLING_FINE,  # 1/(8π) ≈ 0.0398 (transition jitter)
            "NAV_eta": 0.5,  # unit midpoint (transition mix ratio)
            "REMESH_alpha": 0.5,  # unit midpoint (REMESH echo mix)
        }
    )
    GLYPH_THRESHOLDS: dict[str, float] = field(
        default_factory=lambda: {
            "hi": 0.5,  # unit midpoint (coherence hysteresis upper)
            "lo": 0.25,  # unit quarter (coherence hysteresis lower)
            "dnfr": 1e-3,
        }  # π-derived hi/lo (unit-coherence fractions)
    )
    NAV_RANDOM: bool = True
    NAV_STRICT: bool = False
    RANDOM_SEED: int = 0
    JITTER_CACHE_SIZE: int = 256
    OZ_NOISE_MODE: bool = False
    OZ_SIGMA: float = COUPLING_GENTLE  # 1/(4π) ≈ 0.0796 (OZ stochastic-mode noise width)
    GRAMMAR: dict[str, Any] = field(
        default_factory=lambda: {
            # repeat-avoidance window = the structural relaxation window: do not
            # re-fire a destabilizer/transformer before its |ΔNFR| perturbation
            # relaxes into the coherence band (derived; = 3 for νf=1, dt=0.5).
            "window": derive_bifurcation_window_from_physics(),
            "avoid_repeats": ["ZHIR", "OZ", "THOL"],
            "force_dnfr": MID_COHERENCE_THRESHOLD,  # 2/π ≈ 0.6366 (force threshold)
            "force_accel": MID_COHERENCE_THRESHOLD,  # 2/π ≈ 0.6366 (acceleration force threshold)
            "fallbacks": {"ZHIR": "NAV", "OZ": "ZHIR", "THOL": "NAV"},
        }
    )
    SELECTOR_WEIGHTS: dict[str, float] = field(
        default_factory=lambda: {
            # Coherence-band hierarchy (π-derived): Si ≻ ΔNFR ≻ acceleration.
            "w_si": CHANNEL_WEIGHT_PRIMARY,  # π/(π+1) ≈ 0.7585
            "w_dnfr": CHANNEL_WEIGHT_SECONDARY,  # π/(π+1)² ≈ 0.1832
            "w_accel": CHANNEL_WEIGHT_TERTIARY,  # 1/(π+1)² ≈ 0.0583
        }
    )
    SELECTOR_THRESHOLDS: dict[str, float] = field(
        default_factory=lambda: dict(SELECTOR_THRESHOLD_DEFAULTS)
    )
    GAMMA: dict[str, Any] = field(
        default_factory=lambda: {"type": "none", "beta": 0.0, "R0": 0.0}
    )
    CALLBACKS_STRICT: bool = False
    VALIDATORS_STRICT: bool = False
    PROGRAM_TRACE_MAXLEN: int = 50
    HISTORY_MAXLEN: int = 0
    NODAL_EQUATION_CLIP_AWARE: bool = True
    NODAL_EQUATION_TOLERANCE: float = 1e-9
    # THOL (Self-organization) vibrational metabolism parameters
    THOL_METABOLIC_ENABLED: bool = True
    THOL_METABOLIC_GRADIENT_WEIGHT: float = COUPLING_MODERATE  # 1/(2π) ≈ 0.159
    THOL_METABOLIC_COMPLEXITY_WEIGHT: float = COUPLING_GENTLE  # 1/(4π) ≈ 0.0796
    THOL_BIFURCATION_THRESHOLD: float = 0.1

    # THOL network propagation and cascade parameters
    THOL_PROPAGATION_ENABLED: bool = True
    THOL_MIN_COUPLING_FOR_PROPAGATION: float = 0.5
    THOL_PROPAGATION_ATTENUATION: float = 0.7
    THOL_CASCADE_MIN_NODES: int = 3

    # THOL precondition thresholds
    THOL_MIN_EPI: float = 0.2  # Minimum EPI for bifurcation
    THOL_MIN_VF: float = 0.1  # Minimum structural frequency for reorganization
    THOL_MIN_DEGREE: int = 1  # Minimum network connectivity
    THOL_MIN_HISTORY_LENGTH: int = 3  # Minimum EPI history for acceleration computation
    THOL_ALLOW_ISOLATED: bool = False  # Require network context by default
    THOL_MIN_COLLECTIVE_COHERENCE: float = (
        THOL_MIN_COLLECTIVE_COHERENCE  # 1/(π+1) ≈ 0.2415 (canonical collective coherence)
    )

    # VAL (Expansion) precondition thresholds
    VAL_MAX_VF: float = 10.0  # Maximum structural frequency threshold
    VAL_MIN_DNFR: float = (
        1e-6  # Minimum positive ΔNFR for coherent expansion (very low to minimize breaking changes)
    )
    VAL_MIN_EPI: float = (
        VAL_MIN_EPI  # = 1/(2π) ≈ 0.159 (minimum structural base)
    )
    VAL_CHECK_NETWORK_CAPACITY: bool = False  # Optional network capacity validation
    VAL_MAX_NETWORK_SIZE: int = (
        1000  # Maximum network size if capacity checking enabled
    )

    # VAL (Expansion) metric thresholds (Issue #2724)
    VAL_BIFURCATION_THRESHOLD: float = (
        VAL_BIFURCATION_THRESHOLD  # 1/(π+1) ≈ 0.2415 (canonical bifurcation detection)
    )
    VAL_MIN_COHERENCE: float = (
        VAL_MIN_COHERENCE  # sin(π/3) = √3/2 ≈ 0.8660 (canonical harmonic coherence)
    )
    VAL_FRACTAL_RATIO_MIN: float = (
        0.5  # Minimum vf_growth/epi_growth ratio for fractality
    )
    VAL_FRACTAL_RATIO_MAX: float = (
        2.0  # max vf_growth/epi_growth ratio for fractality (tunable, dyadic)
    )


@dataclass(frozen=True, slots=True)
class RemeshDefaults:
    """Default parameters for the remeshing subsystem.

    As with :class:`CoreDefaults`, the fields are exported via
    :data:`REMESH_DEFAULTS` and may look unused to static analysers.
    """

    EPS_DNFR_STABLE: float = 1e-3
    EPS_DEPI_STABLE: float = 1e-3
    FRACTION_STABLE_REMESH: float = 0.922  # operational stable fraction (free)
    REMESH_COOLDOWN_WINDOW: int = 20
    REMESH_COOLDOWN_TS: float = 0.0
    REMESH_REQUIRE_STABILITY: bool = True
    REMESH_STABILITY_WINDOW: int = 25
    REMESH_MIN_PHASE_SYNC: float = 0.751  # operational phase-sync threshold (free)
    REMESH_MAX_GLYPH_DISR: float = 0.269  # operational max glyph disruption (free)
    REMESH_MIN_SIGMA_MAG: float = 0.536  # operational sigma-magnitude threshold (free)
    REMESH_MIN_KURAMOTO_R: float = 0.922  # operational Kuramoto-R threshold (free)
    REMESH_MIN_SI_HI_FRAC: float = 0.536  # operational SI high fraction (free)
    REMESH_LOG_EVENTS: bool = True
    REMESH_MODE: str = "knn"
    REMESH_COMMUNITY_K: int = 2
    REMESH_TAU_GLOBAL: int = 8
    REMESH_TAU_LOCAL: int = 4
    REMESH_ALPHA: float = 0.5
    REMESH_ALPHA_HARD: bool = False


_core_defaults = asdict(CoreDefaults())
_remesh_defaults = asdict(RemeshDefaults())

CORE_DEFAULTS = MappingProxyType(_core_defaults)
REMESH_DEFAULTS = MappingProxyType(_remesh_defaults)

# ============================================================================
# STRUCTURAL FIELD CONSTANTS (operational thresholds; audit 2026: not derived — only π phase-wrap is genuine)
# ============================================================================

# Structural Field Thresholds (Research Constants)
K_PHI_ASYMPTOTIC_ALPHA = 2.76  # Power-law exponent for multiscale K_φ variance
# Tetrad thresholds: alias the single canonical source (constants.canonical)
K_PHI_CURVATURE_THRESHOLD = (
    K_PHI_CANONICAL_THRESHOLD  # 0.9×π ≈ 2.8274 (90% of theoretical maximum)
)
PHASE_GRADIENT_THRESHOLD = GRAD_PHI_CANONICAL_THRESHOLD  # heuristic early-warning ≈ 0.196 (π/16; audit 2026: not derived; |∇φ| bound is π)

# Business Domain Thresholds (operational constants, not derived)
MIN_BUSINESS_COHERENCE = (
    MIN_BUSINESS_COHERENCE_CANONICAL  # = 0.75 (operational)
)
MIN_BUSINESS_SENSE_INDEX = round(
    0.700034, 3
)  # ≈ 0.700 (CALIBRATED target; an empirical value, not derived)

# Statistical Analysis Constants
STATISTICAL_SIGNIFICANCE_THRESHOLD = 0.5  # R² threshold for regression validity
EXPONENT_TOLERANCE = 0.1  # Tolerance for critical exponent classification
ISING_2D_TOLERANCE = 0.15  # Larger tolerance for 2D Ising (nu ≈ 1.0)

# Critical Exponents (Universal Scaling)
MEAN_FIELD_EXPONENT = 0.5  # Mean-field critical exponent
ISING_3D_EXPONENT = 0.63  # 3D Ising universality class
ISING_2D_EXPONENT = 1.0  # 2D Ising universality class

# Coherence Length Constants
CRITICAL_INFORMATION_DENSITY = (
    1.400014
)  # ≈ 1.400 (operational critical density)
MIN_DISTANCE_THRESHOLD = 0.01  # Numerical stability minimum distance

# Field Optimization Constants
HIGH_CORRELATION_THRESHOLD = 0.8  # Strong field duality threshold
VERY_HIGH_CORRELATION_THRESHOLD = 0.95  # Very strong field duality
MODERATE_CORRELATION_THRESHOLD = 0.5  # Moderate correlation for speedup
CHIRALITY_THRESHOLD = 1.0  # Chirality magnitude threshold
HIGH_ENERGY_THRESHOLD = 5.083204  # ≈ 5.083 (operational high energy threshold)
LOW_ENERGY_THRESHOLD = 1.0  # Low energy density threshold
COMPLEX_FIELD_THRESHOLD = 1.5  # complex-field magnitude threshold (tunable)
SYMMETRY_BREAKING_THRESHOLD = 1.0  # Symmetry breaking threshold

# Performance Scaling Constants
CORRELATION_SPEEDUP_FACTOR = 2.0  # Speedup multiplier for high correlation
CHIRALITY_MEMORY_FACTOR = 0.3  # Memory reduction factor for chirality
MAX_MEMORY_REDUCTION = 0.8  # Maximum memory reduction
MIN_ENERGY_FACTOR = 1.2  # Minimum energy computation factor
ENERGY_SCALING_FACTOR = 0.1  # Energy scaling multiplier
MAX_ENERGY_FACTOR = PI  # π ≈ 3.14159 (geometric energy computation factor)
BASELINE_FACTOR = 1.0  # Baseline performance factor