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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/dynamics/cache_aware_fft_engine.py

cache_aware_fft_engine.py

TNFR Cache-Aware FFT Arithmetic Engine

This engine implements the advanced FFT arithmetic operations that emerge from the TNFR nodal equation ∂EPI/∂t = νf · ΔNFR(t) with full integration into the repository's unified cache system.

Mathematical Foundation: The Graph Fourier Transform reveals TNFR dynamics as spectral operations:

  • EPI evolution → Spectral coefficient modulation
  • ΔNFR computation → Laplacian eigenvalue multiplication in frequency domain
  • νf modulation → Pointwise multiplication in spectral space
  • Phase coupling → Convolution operations via inverse FFT

Cache Integration Benefits:

  • Spectral basis reuse across engines (O(N³) → O(1) for repeated decompositions)
  • FFT kernel memoization (filter responses, windows, convolution kernels)
  • Cross-engine sharing of spectral artifacts
  • Predictive prefetching of likely spectral operations

Status: CANONICAL CACHE-INTEGRATED FFT ENGINE

Source Code

python
"""
TNFR Cache-Aware FFT Arithmetic Engine

This engine implements the advanced FFT arithmetic operations that emerge
from the TNFR nodal equation ∂EPI/∂t = νf · ΔNFR(t) with full integration
into the repository's unified cache system.

Mathematical Foundation:
The Graph Fourier Transform reveals TNFR dynamics as spectral operations:
- EPI evolution → Spectral coefficient modulation
- ΔNFR computation → Laplacian eigenvalue multiplication in frequency domain
- νf modulation → Pointwise multiplication in spectral space
- Phase coupling → Convolution operations via inverse FFT

Cache Integration Benefits:
- Spectral basis reuse across engines (O(N³) → O(1) for repeated decompositions)
- FFT kernel memoization (filter responses, windows, convolution kernels)
- Cross-engine sharing of spectral artifacts
- Predictive prefetching of likely spectral operations

Status: CANONICAL CACHE-INTEGRATED FFT ENGINE
"""

import time
from dataclasses import dataclass
from enum import Enum
from typing import Any

from ..mathematics.unified_numerical import NUMPY_AVAILABLE as HAS_NUMPY
from ..mathematics.unified_numerical import np

try:
    import networkx as nx

    HAS_NETWORKX = True
except ImportError:
    HAS_NETWORKX = False
    nx = None

# Import FFT infrastructure
try:
    from .advanced_fft_arithmetic import TNFRAdvancedFFTEngine

    HAS_ADVANCED_FFT = True
except ImportError:
    HAS_ADVANCED_FFT = False

# Import cache coordination
try:
    from .fft_cache_coordinator import get_fft_cache_coordinator

    HAS_FFT_CACHE = True
except ImportError:
    HAS_FFT_CACHE = False

# Import cache optimization
try:
    from .advanced_cache_optimizer import (
        CacheOptimizationStrategy,
        get_cache_optimizer,
        record_computation,
    )

    HAS_CACHE_OPTIMIZER = True
except ImportError:
    HAS_CACHE_OPTIMIZER = False

# Import spectral analysis
try:
    from ..mathematics.spectral import igft

    HAS_SPECTRAL = True
except ImportError:
    HAS_SPECTRAL = False

# Operational engine-tuning knobs (not TNFR physics) → tnfr.constants.operational
from ..constants.operational import (
    ARITHMETIC_FFT_ENHANCEMENT_CANONICAL,
    EMERGENT_COORDINATION_BOOST_CANONICAL,
    EMERGENT_COUPLING_STRENGTH_CANONICAL,
    EMERGENT_EFFICIENCY_GAIN_CANONICAL,
    EMERGENT_FREQ_BALANCE_CANONICAL,
)


class FFTOperationType(Enum):
    """Types of cache-optimized FFT operations."""

    SPECTRAL_CONVOLUTION = "spectral_convolution"
    HARMONIC_ANALYSIS = "harmonic_analysis"
    SPECTRAL_FILTERING = "spectral_filtering"
    PHASE_SYNCHRONIZATION = "phase_synchronization"
    MULTI_SCALE_DECOMPOSITION = "multi_scale_decomposition"
    CROSS_SPECTRAL_ANALYSIS = "cross_spectral_analysis"


@dataclass
class CacheOptimizedFFTResult:
    """Result of cache-optimized FFT operation."""

    operation_type: FFTOperationType
    fft_result: Any
    cache_hits: int = 0
    cache_misses: int = 0
    optimization_time_saved: float = 0.0
    total_execution_time: float = 0.0
    spectral_basis_reused: bool = False
    kernel_cache_hits: int = 0


class TNFRCacheAwareFFTEngine:
    """
    Cache-aware FFT arithmetic engine for TNFR computations.

    This engine combines advanced FFT operations with intelligent caching
    to maximize performance while preserving TNFR mathematical coherence.
    """

    def __init__(
        self,
        enable_cache_optimization: bool = True,
        enable_predictive_prefetch: bool = True,
        cache_coordinator=None,
    ):
        self.enable_cache_optimization = enable_cache_optimization
        self.enable_predictive_prefetch = enable_predictive_prefetch

        # Initialize FFT engine with cache coordinator
        if HAS_ADVANCED_FFT:
            fft_cache = cache_coordinator or (
                get_fft_cache_coordinator() if HAS_FFT_CACHE else None
            )
            self.fft_engine = TNFRAdvancedFFTEngine(cache_coordinator=fft_cache)
        else:
            self.fft_engine = None

        # Cache optimization
        self.cache_optimizer = get_cache_optimizer() if HAS_CACHE_OPTIMIZER else None

        # Performance tracking
        self.total_operations = 0
        self.total_cache_hits = 0
        self.total_time_saved = 0.0

    @record_computation("spectral_convolution")
    def spectral_convolution_cached(
        self,
        G: Any,
        signal1: np.ndarray | None = None,
        signal2: np.ndarray | None = None,
        operation: str = "multiply",
    ) -> CacheOptimizedFFTResult:
        """
        Perform spectral convolution with intelligent caching.

        This leverages cached spectral decompositions and memoized convolution kernels.
        """
        if not self.fft_engine or not HAS_NUMPY:
            raise RuntimeError("FFT engine not available")

        start_time = time.perf_counter()

        # Apply cache optimizations
        cache_results = []
        if self.enable_cache_optimization and self.cache_optimizer:
            cache_results = self.cache_optimizer.optimize_cache_strategy(
                G,
                [
                    CacheOptimizationStrategy.SPECTRAL_PERSISTENCE,
                    CacheOptimizationStrategy.CROSS_ENGINE_SHARING,
                    CacheOptimizationStrategy.PREDICTIVE_PREFETCH,
                ],
            )

        # Perform FFT operation (benefits from cache optimizations)
        fft_result = self.fft_engine.spectral_convolution(
            G, signal1, signal2, operation
        )

        total_time = time.perf_counter() - start_time

        # Aggregate cache statistics
        total_cache_hits = sum(r.cache_hits_improved for r in cache_results)
        time_saved = sum(r.computation_time_saved for r in cache_results)

        self.total_operations += 1
        self.total_cache_hits += total_cache_hits
        self.total_time_saved += time_saved

        return CacheOptimizedFFTResult(
            operation_type=FFTOperationType.SPECTRAL_CONVOLUTION,
            fft_result=fft_result,
            cache_hits=total_cache_hits,
            cache_misses=1 if total_cache_hits == 0 else 0,
            optimization_time_saved=time_saved,
            total_execution_time=total_time,
            spectral_basis_reused=any(
                r.strategy == CacheOptimizationStrategy.SPECTRAL_PERSISTENCE
                for r in cache_results
            ),
            kernel_cache_hits=getattr(
                self.fft_engine.cache_coordinator,
                "get_stats",
                lambda: {"kernel_hits": 0},
            )()["kernel_hits"],
        )

    @record_computation("harmonic_analysis")
    def harmonic_analysis_cached(
        self, G: Any, num_harmonics: int = 5, window_size: int | None = None
    ) -> CacheOptimizedFFTResult:
        """
        Perform harmonic analysis with cache optimization.

        Reuses spectral decompositions and caches harmonic pattern analysis.
        """
        if not self.fft_engine:
            raise RuntimeError("FFT engine not available")

        start_time = time.perf_counter()

        # Optimize cache for harmonic analysis
        cache_results = []
        if self.enable_cache_optimization and self.cache_optimizer:
            cache_results = self.cache_optimizer.optimize_cache_strategy(
                G,
                [
                    CacheOptimizationStrategy.SPECTRAL_PERSISTENCE,
                    CacheOptimizationStrategy.PATTERN_COMPRESSION,
                    CacheOptimizationStrategy.TEMPORAL_LOCALITY,
                ],
            )

        # Perform harmonic analysis
        fft_result = self.fft_engine.harmonic_analysis(G, num_harmonics, window_size)

        total_time = time.perf_counter() - start_time

        # Aggregate statistics
        total_cache_hits = sum(r.cache_hits_improved for r in cache_results)
        time_saved = sum(r.computation_time_saved for r in cache_results)

        self.total_operations += 1
        self.total_cache_hits += total_cache_hits
        self.total_time_saved += time_saved

        return CacheOptimizedFFTResult(
            operation_type=FFTOperationType.HARMONIC_ANALYSIS,
            fft_result=fft_result,
            cache_hits=total_cache_hits,
            cache_misses=1 if total_cache_hits == 0 else 0,
            optimization_time_saved=time_saved,
            total_execution_time=total_time,
            spectral_basis_reused=True,  # Harmonic analysis always reuses basis
        )

    @record_computation("spectral_filtering")
    def spectral_filtering_cached(
        self,
        G: Any,
        filter_type: str = "lowpass",
        cutoff_frequency: float | None = None,
        filter_order: int = 4,
    ) -> CacheOptimizedFFTResult:
        """
        Perform spectral filtering with kernel caching.

        Filter kernels are cached and reused across similar filtering operations.
        """
        if not self.fft_engine:
            raise RuntimeError("FFT engine not available")

        start_time = time.perf_counter()

        # Optimize for filtering operations
        cache_results = []
        if self.enable_cache_optimization and self.cache_optimizer:
            cache_results = self.cache_optimizer.optimize_cache_strategy(
                G,
                [
                    CacheOptimizationStrategy.CROSS_ENGINE_SHARING,
                    CacheOptimizationStrategy.IMPORTANCE_WEIGHTING,
                ],
            )

        # Perform spectral filtering (uses cached kernels)
        fft_result = self.fft_engine.spectral_filtering(
            G, filter_type, cutoff_frequency, filter_order
        )

        total_time = time.perf_counter() - start_time

        # Calculate cache benefits
        total_cache_hits = sum(r.cache_hits_improved for r in cache_results)
        time_saved = sum(r.computation_time_saved for r in cache_results)

        # Get kernel cache statistics
        kernel_hits = 0
        if (
            hasattr(self.fft_engine, "cache_coordinator")
            and self.fft_engine.cache_coordinator
        ):
            stats = self.fft_engine.cache_coordinator.get_stats()
            kernel_hits = stats.get("kernel_hits", 0)

        self.total_operations += 1
        self.total_cache_hits += total_cache_hits
        self.total_time_saved += time_saved

        return CacheOptimizedFFTResult(
            operation_type=FFTOperationType.SPECTRAL_FILTERING,
            fft_result=fft_result,
            cache_hits=total_cache_hits,
            cache_misses=1 if total_cache_hits == 0 else 0,
            optimization_time_saved=time_saved,
            total_execution_time=total_time,
            spectral_basis_reused=True,
            kernel_cache_hits=kernel_hits,
        )

    def multi_scale_analysis_cached(
        self, G: Any, scales: list[float] = None, analysis_type: str = "wavelet"
    ) -> CacheOptimizedFFTResult:
        """
        Perform multi-scale spectral analysis with hierarchical caching.

        Each scale level can reuse computations from other scales.
        """
        if not HAS_SPECTRAL or not self.fft_engine:
            raise RuntimeError("Spectral analysis not available")

        if scales is None:
            scales = [
                EMERGENT_FREQ_BALANCE_CANONICAL,
                1.0,
                EMERGENT_COORDINATION_BOOST_CANONICAL,
                ARITHMETIC_FFT_ENHANCEMENT_CANONICAL,
            ]

        start_time = time.perf_counter()

        # Optimize for multi-scale operations
        cache_results = []
        if self.enable_cache_optimization and self.cache_optimizer:
            cache_results = self.cache_optimizer.optimize_cache_strategy(
                G,
                [
                    CacheOptimizationStrategy.SPECTRAL_PERSISTENCE,
                    CacheOptimizationStrategy.CROSS_ENGINE_SHARING,
                    CacheOptimizationStrategy.PATTERN_COMPRESSION,
                ],
            )

        # Get spectral state (cached via coordinator)
        spectral_state = self.fft_engine.get_spectral_state(G)

        # Perform multi-scale analysis
        scale_results = {}
        for scale in scales:
            # Apply scale transformation in spectral domain
            scaled_coeffs = spectral_state.spectral_coeffs * (1.0 / scale)

            # Transform back for this scale
            scaled_signal = igft(scaled_coeffs, spectral_state.eigenvectors)

            # Analyze this scale
            scale_results[scale] = {
                "signal": scaled_signal,
                "energy": float(np.sum(np.abs(scaled_coeffs) ** 2)),
                "dominant_freq": float(
                    spectral_state.frequencies[np.argmax(np.abs(scaled_coeffs))]
                ),
            }

        total_time = time.perf_counter() - start_time

        # Aggregate cache statistics
        total_cache_hits = sum(r.cache_hits_improved for r in cache_results)
        time_saved = sum(r.computation_time_saved for r in cache_results)

        multi_scale_result = {
            "scales": scales,
            "scale_results": scale_results,
            "spectral_state": spectral_state,
            "analysis_type": analysis_type,
        }

        self.total_operations += 1
        self.total_cache_hits += total_cache_hits
        self.total_time_saved += time_saved

        return CacheOptimizedFFTResult(
            operation_type=FFTOperationType.MULTI_SCALE_DECOMPOSITION,
            fft_result=multi_scale_result,
            cache_hits=total_cache_hits,
            cache_misses=len(scales),  # One "miss" per scale computed
            optimization_time_saved=time_saved,
            total_execution_time=total_time,
            spectral_basis_reused=True,
        )

    def cross_spectral_coherence_cached(
        self, G1: Any, G2: Any, coherence_bands: list[tuple[float, float]] = None
    ) -> CacheOptimizedFFTResult:
        """
        Compute cross-spectral coherence between two graphs with caching.

        Reuses spectral decompositions for both graphs and caches coherence calculations.
        """
        if not self.fft_engine:
            raise RuntimeError("FFT engine not available")

        if coherence_bands is None:
            coherence_bands = [
                (0.0, EMERGENT_EFFICIENCY_GAIN_CANONICAL),
                (EMERGENT_EFFICIENCY_GAIN_CANONICAL, EMERGENT_FREQ_BALANCE_CANONICAL),
                (EMERGENT_FREQ_BALANCE_CANONICAL, EMERGENT_COUPLING_STRENGTH_CANONICAL),
                (EMERGENT_COUPLING_STRENGTH_CANONICAL, 1.0),
            ]

        start_time = time.perf_counter()

        # Optimize for cross-spectral analysis
        cache_results = []
        if self.enable_cache_optimization and self.cache_optimizer:
            # Apply optimizations to both graphs
            cache_results.extend(
                self.cache_optimizer.optimize_cache_strategy(
                    G1, [CacheOptimizationStrategy.SPECTRAL_PERSISTENCE]
                )
            )
            cache_results.extend(
                self.cache_optimizer.optimize_cache_strategy(
                    G2, [CacheOptimizationStrategy.SPECTRAL_PERSISTENCE]
                )
            )

        # Get spectral states for both graphs (leverages caching)
        spectral1 = self.fft_engine.get_spectral_state(G1)
        spectral2 = self.fft_engine.get_spectral_state(G2)

        # Compute cross-spectral coherence
        coherence_results = {}

        for low_freq, high_freq in coherence_bands:
            # Find frequency indices in band
            freq_mask1 = (spectral1.frequencies >= low_freq) & (
                spectral1.frequencies < high_freq
            )
            freq_mask2 = (spectral2.frequencies >= low_freq) & (
                spectral2.frequencies < high_freq
            )

            if np.any(freq_mask1) and np.any(freq_mask2):
                # Compute coherence in this band
                coeffs1_band = spectral1.spectral_coeffs[freq_mask1]
                coeffs2_band = spectral2.spectral_coeffs[freq_mask2]

                # Cross-correlation in frequency domain
                cross_power = np.mean(coeffs1_band * np.conj(coeffs2_band))
                auto_power1 = np.mean(np.abs(coeffs1_band) ** 2)
                auto_power2 = np.mean(np.abs(coeffs2_band) ** 2)

                coherence = (
                    abs(cross_power) ** 2 / (auto_power1 * auto_power2)
                    if (auto_power1 * auto_power2) > 0
                    else 0.0
                )

                coherence_results[(low_freq, high_freq)] = {
                    "coherence": float(coherence),
                    "cross_power": float(abs(cross_power)),
                    "auto_power1": float(auto_power1),
                    "auto_power2": float(auto_power2),
                }

        total_time = time.perf_counter() - start_time

        # Aggregate cache statistics
        total_cache_hits = sum(r.cache_hits_improved for r in cache_results)
        time_saved = sum(r.computation_time_saved for r in cache_results)

        cross_spectral_result = {
            "coherence_bands": coherence_bands,
            "coherence_results": coherence_results,
            "mean_coherence": np.mean(
                [r["coherence"] for r in coherence_results.values()]
            ),
            "spectral_states": (spectral1, spectral2),
        }

        self.total_operations += 1
        self.total_cache_hits += total_cache_hits
        self.total_time_saved += time_saved

        return CacheOptimizedFFTResult(
            operation_type=FFTOperationType.CROSS_SPECTRAL_ANALYSIS,
            fft_result=cross_spectral_result,
            cache_hits=total_cache_hits,
            cache_misses=2 if total_cache_hits == 0 else 0,  # Two graphs
            optimization_time_saved=time_saved,
            total_execution_time=total_time,
            spectral_basis_reused=True,
        )

    def get_performance_summary(self) -> dict[str, Any]:
        """Get comprehensive performance summary."""
        fft_stats = {}
        if (
            hasattr(self.fft_engine, "cache_coordinator")
            and self.fft_engine.cache_coordinator
        ):
            fft_stats = self.fft_engine.cache_coordinator.get_stats()

        optimizer_stats = {}
        if self.cache_optimizer:
            optimizer_stats = self.cache_optimizer.get_optimization_stats()

        return {
            "cache_aware_fft_engine": {
                "total_operations": self.total_operations,
                "total_cache_hits": self.total_cache_hits,
                "total_time_saved": self.total_time_saved,
                "cache_hit_rate": self.total_cache_hits / max(1, self.total_operations),
            },
            "fft_cache_coordinator": fft_stats,
            "cache_optimizer": optimizer_stats,
            "overall_efficiency": {
                "average_time_saved_per_op": self.total_time_saved
                / max(1, self.total_operations),
                "cache_effectiveness": self.total_cache_hits
                / max(1, self.total_operations),
            },
        }


# Factory functions
def create_cache_aware_fft_engine(**kwargs) -> TNFRCacheAwareFFTEngine:
    """Create cache-aware FFT engine."""
    return TNFRCacheAwareFFTEngine(**kwargs)


# Convenience functions for common operations
def cached_spectral_convolution(G: Any, **kwargs) -> CacheOptimizedFFTResult:
    """Convenience function for cached spectral convolution."""
    engine = create_cache_aware_fft_engine()
    return engine.spectral_convolution_cached(G, **kwargs)


def cached_harmonic_analysis(G: Any, **kwargs) -> CacheOptimizedFFTResult:
    """Convenience function for cached harmonic analysis."""
    engine = create_cache_aware_fft_engine()
    return engine.harmonic_analysis_cached(G, **kwargs)


def cached_spectral_filtering(G: Any, **kwargs) -> CacheOptimizedFFTResult:
    """Convenience function for cached spectral filtering."""
    engine = create_cache_aware_fft_engine()
    return engine.spectral_filtering_cached(G, **kwargs)