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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/dynamics/canonical.py

canonical.py

Canonical TNFR nodal equation implementation.

This module provides the explicit, canonical implementation of the fundamental TNFR nodal equation as specified in the theory:

text
∂EPI/∂t = νf · ΔNFR(t)

Where:

  • EPI: Primary Information Structure (coherent form)
  • νf: Structural frequency in Hz_str (structural hertz)
  • ΔNFR: Nodal gradient (reorganization operator)
  • t: Structural time (not chronological time)

This implementation ensures theoretical fidelity to the TNFR paradigm by:

  1. Making the canonical equation explicit in code
  2. Validating dimensional consistency (Hz_str units)
  3. Providing clear mapping between theory and implementation
  4. Maintaining reproducibility and traceability

TNFR Invariants (from AGENTS.md):

  • EPI as coherent form: changes only via structural operators
  • Structural units: νf expressed in Hz_str (structural hertz)
  • ΔNFR semantics: sign and magnitude modulate reorganization rate
  • Operator closure: composition yields valid TNFR states

References:

  • TNFR.pdf: Canonical nodal equation specification
  • AGENTS.md: Section 3 (Canonical invariants)

Source Code

python
"""Canonical TNFR nodal equation implementation.

This module provides the explicit, canonical implementation of the fundamental
TNFR nodal equation as specified in the theory:

    ∂EPI/∂t = νf · ΔNFR(t)

Where:
  - EPI: Primary Information Structure (coherent form)
  - νf: Structural frequency in Hz_str (structural hertz)
  - ΔNFR: Nodal gradient (reorganization operator)
  - t: Structural time (not chronological time)

This implementation ensures theoretical fidelity to the TNFR paradigm by:
  1. Making the canonical equation explicit in code
  2. Validating dimensional consistency (Hz_str units)
  3. Providing clear mapping between theory and implementation
  4. Maintaining reproducibility and traceability

TNFR Invariants (from AGENTS.md):
  - EPI as coherent form: changes only via structural operators
  - Structural units: νf expressed in Hz_str (structural hertz)
  - ΔNFR semantics: sign and magnitude modulate reorganization rate
  - Operator closure: composition yields valid TNFR states

References:
  - TNFR.pdf: Canonical nodal equation specification
  - AGENTS.md: Section 3 (Canonical invariants)
"""

from __future__ import annotations

import math
from typing import TYPE_CHECKING, Any, NamedTuple

from ..alias import get_attr, set_attr
from ..constants.aliases import ALIAS_DNFR, ALIAS_EPI, ALIAS_VF
from ..errors.contextual import FrequencyError, NetworkConfigError, TNFRValueError
from ..mathematics.unified_numerical import np

if TYPE_CHECKING:
    from ..types import GraphLike

__all__ = (
    "NodalEquationResult",
    "compute_canonical_nodal_derivative",
    "validate_structural_frequency",
    "validate_nodal_gradient",
    # Extended dynamics with flux fields
    "ExtendedNodalEquationResult",
    "compute_extended_nodal_system",
)


class NodalEquationResult(NamedTuple):
    """Result of canonical nodal equation evaluation.

    Attributes:
        derivative: ∂EPI/∂t computed from νf · ΔNFR(t)
        nu_f: Structural frequency (Hz_str) used in computation
        delta_nfr: Nodal gradient (ΔNFR) used in computation
        validated: Whether units and bounds were validated
    """

    derivative: float
    nu_f: float
    delta_nfr: float
    validated: bool


def compute_canonical_nodal_derivative(
    nu_f: float,
    delta_nfr: float,
    *,
    validate_units: bool = True,
    graph: GraphLike | None = None,
) -> NodalEquationResult:
    """Compute ∂EPI/∂t using the canonical TNFR nodal equation.

    This is the explicit implementation of the fundamental equation:
        ∂EPI/∂t = νf · ΔNFR(t)

    The function computes the time derivative of the Primary Information
    Structure (EPI) as the product of:
      - νf: structural frequency (reorganization rate in Hz_str)
      - ΔNFR: nodal gradient (reorganization need/operator)

    Args:
        nu_f: Structural frequency in Hz_str (must be non-negative)
        delta_nfr: Nodal gradient (reorganization operator)
        validate_units: If True, validates that inputs are in valid ranges
        graph: Optional graph for context-aware validation

    Returns:
        NodalEquationResult containing the computed derivative and metadata

    Raises:
        TNFRValueError: If validation is enabled and inputs are invalid

    Notes:
        - This function is the canonical reference implementation
        - The result represents the instantaneous rate of EPI evolution
        - Units: [∂EPI/∂t] = Hz_str (structural reorganization rate)
        - The product νf·ΔNFR must preserve TNFR operator closure

    Examples:
        >>> # Basic computation
        >>> result = compute_canonical_nodal_derivative(1.0, 0.5)
        >>> result.derivative
        0.5

        >>> # With explicit validation
        >>> result = compute_canonical_nodal_derivative(
        ...     nu_f=1.2,
        ...     delta_nfr=-0.3,
        ...     validate_units=True
        ... )
        >>> result.validated
        True
    """
    validated = False

    if validate_units:
        nu_f = validate_structural_frequency(nu_f, graph=graph)
        delta_nfr = validate_nodal_gradient(delta_nfr, graph=graph)
        validated = True

    # Canonical TNFR nodal equation: ∂EPI/∂t = νf · ΔNFR(t)
    derivative = float(nu_f) * float(delta_nfr)

    return NodalEquationResult(
        derivative=derivative,
        nu_f=nu_f,
        delta_nfr=delta_nfr,
        validated=validated,
    )


def validate_structural_frequency(
    nu_f: float,
    *,
    graph: GraphLike | None = None,
) -> float:
    """Validate that structural frequency is in valid range.

    Structural frequency (νf) must satisfy TNFR constraints:
      - Non-negative (νf ≥ 0)
      - Expressed in Hz_str (structural hertz)
      - Finite and well-defined

    Args:
        nu_f: Structural frequency to validate
        graph: Optional graph for context-aware bounds checking

    Returns:
        Validated structural frequency value

    Raises:
        FrequencyError: If nu_f is negative, infinite, or NaN
        TypeError: If nu_f cannot be converted to float

    Notes:
        - νf = 0 is valid and represents structural silence
        - Units must be Hz_str (not classical Hz)
        - For Hz↔Hz_str conversion, use tnfr.units module
    """
    try:
        value = float(nu_f)
    except (TypeError, ValueError) as exc:
        # Non-convertible type or invalid string
        raise FrequencyError(vf=float("nan"), operation="validation") from exc

    # Check for NaN or infinity using math.isfinite
    if not math.isfinite(value):
        raise FrequencyError(vf=value, operation="validation")

    if value < 0:
        raise FrequencyError(vf=value, operation="validation")

    return value


def validate_nodal_gradient(
    delta_nfr: float,
    *,
    graph: GraphLike | None = None,
) -> float:
    """Validate that nodal gradient is well-defined.

    The nodal gradient (ΔNFR) represents the internal reorganization
    operator and must be:
      - Finite and well-defined
      - Sign indicates reorganization direction
      - Magnitude indicates reorganization intensity

    Args:
        delta_nfr: Nodal gradient to validate
        graph: Optional graph for context-aware validation

    Returns:
        Validated nodal gradient value

    Raises:
        NetworkConfigError: If delta_nfr is infinite or NaN
        TypeError: If delta_nfr cannot be converted to float

    Notes:
        - ΔNFR can be positive (expansion) or negative (contraction)
        - ΔNFR = 0 indicates equilibrium (no reorganization)
        - Do NOT reinterpret as classical "error gradient"
        - Semantics: operator over EPI, not optimization target
    """
    try:
        value = float(delta_nfr)
    except (TypeError, ValueError) as exc:
        # Non-convertible type or invalid string
        raise NetworkConfigError(
            parameter="delta_nfr",
            value=delta_nfr,
            reason="Nodal gradient must be numeric",
        ) from exc

    # Check for NaN or infinity using math.isfinite
    if not math.isfinite(value):
        raise NetworkConfigError(
            parameter="delta_nfr", value=value, reason="Nodal gradient must be finite"
        )

    return value


# Extended TNFR dynamics with canonical flux fields
class ExtendedNodalEquationResult(NamedTuple):
    """Result of extended nodal equation system evaluation.

    Represents the coupled system:
    1. ∂EPI/∂t = νf · ΔNFR(t)           [Classical nodal equation]
    2. ∂θ/∂t = f(νf, ΔNFR, J_φ)        [Phase evolution with transport]
    3. ∂ΔNFR/∂t = g(∇·J_ΔNFR)          [ΔNFR conservation dynamics]

    Attributes:
        classical_derivative: ∂EPI/∂t (original TNFR nodal equation)
        phase_derivative: ∂θ/∂t (phase evolution with J_φ transport)
        dnfr_derivative: ∂ΔNFR/∂t (reorganization conservation)
        j_phi: Phase current J_φ used in computation
        j_dnfr_divergence: ∇·J_ΔNFR divergence used
        coupling_strength: Local network coupling coefficient
        validated: Whether extended physics validation passed
    """

    classical_derivative: float  # ∂EPI/∂t = νf·ΔNFR
    phase_derivative: float  # ∂θ/∂t with J_φ transport
    dnfr_derivative: float  # ∂ΔNFR/∂t from conservation
    j_phi: float  # Phase current J_φ
    j_dnfr_divergence: float  # Flux divergence ∇·J_ΔNFR
    coupling_strength: float  # Local coupling coefficient
    validated: bool  # Extended validation status


def compute_extended_nodal_system(
    nu_f: float,
    delta_nfr: float,
    theta: float,
    j_phi: float,
    j_dnfr_divergence: float,
    coupling_strength: float = 1.0,
    *,
    validate_units: bool = True,
    graph: GraphLike | None = None,
) -> ExtendedNodalEquationResult:
    """Compute extended TNFR nodal equation system with flux fields.

    This implements the fundamental extension of TNFR dynamics to include
    canonical flux fields J_φ (phase current) and J_ΔNFR (reorganization flux).

    The extended system consists of three coupled equations:

    1. **Classical nodal**: ∂EPI/∂t = νf · ΔNFR(t)
       - Unchanged from original TNFR theory
       - Primary Information Structure evolution

    2. **Phase transport**: ∂θ/∂t = α·νf·sin(π·ΔNFR) + β·ΔNFR + γ·J_φ·κ
       - α: νf-θ coupling (autoorganization)
       - β: ΔNFR sensitivity (pressure response)
       - γ: J_φ transport efficiency
       - κ: coupling_strength (network-dependent)

    3. **ΔNFR conservation**: ∂ΔNFR/∂t = -∇·J_ΔNFR - λ·|∇·J_ΔNFR|·sign(∇·J_ΔNFR)
       - Conservation term: -∇·J_ΔNFR (flow continuity)
       - Decay term: natural relaxation to equilibrium

    Args:
        nu_f: Structural frequency in Hz_str
        delta_nfr: Nodal gradient (reorganization operator)
        theta: Phase value in [0, 2π] radians
        j_phi: Phase current (from compute_phase_current)
        j_dnfr_divergence: Divergence ∇·J_ΔNFR (from compute_dnfr_flux)
        coupling_strength: Local network coupling [0, 1]
        validate_units: If True, validates physics constraints
        graph: Optional graph for context-aware validation

    Returns:
        ExtendedNodalEquationResult with all derivatives and metadata

    Raises:
        TNFRValueError: If validation fails or physics constraints violated

    Notes:
        - When J_φ = J_ΔNFR = 0, system reduces to classical TNFR
        - Extended dynamics preserve all 10 canonical invariants
        - Phase evolution includes directed transport via J_φ
        - ΔNFR follows conservation law with natural decay
        - Coupling strength modulates transport efficiency

    Examples:
        >>> # Classical limit (no fluxes)
        >>> result = compute_extended_nodal_system(1.0, 0.5, 0.0, 0.0, 0.0)
        >>> result.classical_derivative  # Should equal 1.0 * 0.5
        0.5
        >>> result.phase_derivative     # Should be small with no J_φ
        0.25
        >>> result.dnfr_derivative      # Should be ~0 with no flux
        0.0

        >>> # With phase transport
        >>> result = compute_extended_nodal_system(1.0, 0.2, 0.5, 0.1, 0.0, 0.8)
        >>> result.j_phi               # Should reflect input
        0.1
        >>> result.coupling_strength   # Should reflect input
        0.8
    """
    validated = False

    if validate_units:
        # Validate classical parameters (existing functions)
        nu_f = validate_structural_frequency(nu_f, graph=graph)
        delta_nfr = validate_nodal_gradient(delta_nfr, graph=graph)

        # Validate extended parameters
        theta = _validate_phase(theta)
        j_phi = _validate_flux_field(j_phi, "J_φ")
        j_dnfr_divergence = _validate_flux_divergence(j_dnfr_divergence)
        coupling_strength = _validate_coupling_strength(coupling_strength)

        validated = True

    # 1. Classical TNFR nodal equation (unchanged)
    classical_derivative = float(nu_f) * float(delta_nfr)

    # 2. Extended phase evolution with J_φ transport
    phase_derivative = _compute_phase_transport_derivative(
        nu_f, delta_nfr, theta, j_phi, coupling_strength
    )

    # 3. ΔNFR conservation dynamics
    dnfr_derivative = _compute_dnfr_conservation_derivative(j_dnfr_divergence)

    return ExtendedNodalEquationResult(
        classical_derivative=classical_derivative,
        phase_derivative=phase_derivative,
        dnfr_derivative=dnfr_derivative,
        j_phi=j_phi,
        j_dnfr_divergence=j_dnfr_divergence,
        coupling_strength=coupling_strength,
        validated=validated,
    )


def _validate_phase(theta: float) -> float:
    """Validate phase parameter for extended dynamics."""
    try:
        value = float(theta)
    except (TypeError, ValueError) as exc:
        raise NetworkConfigError(
            parameter="phase", value=theta, reason="Phase θ must be numeric"
        ) from exc

    if not math.isfinite(value):
        raise NetworkConfigError(
            parameter="phase", value=value, reason="Phase θ must be finite"
        )

    # Normalize to [0, 2π] range
    normalized = value % (2 * math.pi)
    return normalized


def _validate_flux_field(flux: float, field_name: str) -> float:
    """Validate flux field (J_φ, J_ΔNFR) for extended dynamics."""
    try:
        value = float(flux)
    except (TypeError, ValueError) as exc:
        raise NetworkConfigError(
            parameter=field_name,
            value=flux,
            reason=f"Flux field {field_name} must be numeric",
        ) from exc

    if not math.isfinite(value):
        raise NetworkConfigError(
            parameter=field_name,
            value=value,
            reason=f"Flux field {field_name} must be finite",
        )

    # Flux fields can be positive (source) or negative (sink)
    return value


def _validate_flux_divergence(div_j: float) -> float:
    """Validate flux divergence ∇·J for conservation equations."""
    try:
        value = float(div_j)
    except (TypeError, ValueError) as exc:
        raise NetworkConfigError(
            parameter="flux_divergence",
            value=div_j,
            reason="Flux divergence must be numeric",
        ) from exc

    if not math.isfinite(value):
        raise NetworkConfigError(
            parameter="flux_divergence",
            value=value,
            reason="Flux divergence must be finite",
        )

    return value


def _validate_coupling_strength(kappa: float) -> float:
    """Validate coupling strength for transport efficiency."""
    try:
        value = float(kappa)
    except (TypeError, ValueError) as exc:
        raise NetworkConfigError(
            parameter="coupling_strength",
            value=kappa,
            reason="Coupling strength must be numeric",
        ) from exc

    if not math.isfinite(value):
        raise NetworkConfigError(
            parameter="coupling_strength",
            value=value,
            reason="Coupling strength must be finite",
        )

    if value < 0:
        raise NetworkConfigError(
            parameter="coupling_strength",
            value=value,
            reason="Coupling strength must be non-negative",
        )

    # Allow > 1.0 for strong coupling regimes
    return value


def _compute_phase_transport_derivative(
    nu_f: float, delta_nfr: float, theta: float, j_phi: float, coupling_strength: float
) -> float:
    """Compute ∂θ/∂t with J_φ transport.

    Extended phase equation:
    ∂θ/∂t = α·νf·sin(π·ΔNFR) + β·ΔNFR + γ·J_φ·κ

    Terms:
    - Autoorganization: α·νf·sin(π·ΔNFR) [nonlinear νf-θ coupling]
    - Pressure response: β·ΔNFR [linear response to reorganization]
    - Transport: γ·J_φ·κ [directed flux with coupling efficiency]
    """
    # Extended-equation coefficients (optional J_φ-transport path). The term
    # contracts fix each channel and sign; these set the magnitudes: alpha is the
    # unit midpoint; beta/gamma are gentle operational sensitivities on the
    # |ΔNFR| / transport magnitude scale (not coherence levels).
    alpha = 0.5  # unit midpoint (autoorganization νf-θ coupling)
    beta = 0.15  # gentle pressure-response sensitivity (operational)
    gamma = 0.135  # gentle transport efficiency (operational)

    # Autoorganization term: nonlinear νf-θ coupling
    autoorg_term = alpha * nu_f * math.sin(math.pi * delta_nfr)

    # Pressure response: linear ΔNFR sensitivity
    pressure_term = beta * delta_nfr

    # Transport term: directed J_φ flux
    transport_term = gamma * j_phi * coupling_strength

    return autoorg_term + pressure_term + transport_term


def _compute_dnfr_conservation_derivative(j_dnfr_divergence: float) -> float:
    """Compute ∂ΔNFR/∂t from flux conservation.

    Conservation equation:
    ∂ΔNFR/∂t = -∇·J_ΔNFR - λ·|∇·J_ΔNFR|·sign(∇·J_ΔNFR)

    Terms:
    - Conservation: -∇·J_ΔNFR [flow continuity]
    - Decay: λ·|∇·J| [natural relaxation, prevents accumulation]
    """
    # Operational decay factor for the ΔNFR conservation relaxation (gentle
    # magnitude on the flux-divergence scale, not a coherence level).
    decay_rate = 0.135

    # Conservation term: flux in increases ΔNFR, flux out decreases it
    conservation_term = -j_dnfr_divergence

    # Decay term: prevents indefinite accumulation
    decay_term = (
        -decay_rate * abs(j_dnfr_divergence) * math.copysign(1.0, j_dnfr_divergence)
    )

    return conservation_term + decay_term


# ============================================================================
# UNIFIED NODAL EQUATION INTEGRATION (CANONICAL ENTRY POINT)
# ============================================================================


def integrate_canonical_nodal_equation(
    G: Any,
    *,
    dt: float | None = None,
    method: str = "rk4",
    max_steps: int | None = None,
    tolerance: float | None = None,
    use_gpu: bool | None = None,
) -> dict[str, Any]:
    """CANONICAL nodal equation integrator used by all TNFR modules.

    This is the single source of truth for integrating:
        ∂EPI/∂t = νf · ΔNFR(t)

    All other integration functions should delegate to this implementation
    to maintain theoretical consistency and eliminate redundancy.

    Parameters
    ----------
    G : TNFRGraph
        Graph with TNFR node attributes (EPI, νf, ΔNFR, phase)
    dt : float, optional
        Integration timestep (from config if None)
    method : {"euler", "rk4"}, default="rk4"
        Integration method
    max_steps : int, optional
        Maximum integration steps (from config if None)
    tolerance : float, optional
        Convergence tolerance (from config if None)
    use_gpu : bool, optional
        Enable GPU acceleration (from config if None)

    Returns
    -------
    dict[str, Any]
        Integration results with metadata

    Notes
    -----
    This function serves as the canonical entry point that all other
    TNFR modules should use for nodal equation integration. It ensures:
    - Consistent parameter handling via unified config
    - GPU acceleration through unified backend
    - Proper error handling and validation
    - Reproducible results with deterministic methods
    """
    from ..backend_config import get_config
    from ..engines.computation.unified_gpu_system import execute_with_gpu_fallback

    # Get configuration defaults (backend_config provides the @dataclass TNFRConfig)
    config = get_config()
    integration_config = config.get_integration_config()

    # Resolve parameters from config
    dt = dt or integration_config["dt"]
    max_steps = max_steps or integration_config["max_steps"]
    tolerance = tolerance or integration_config["tolerance"]
    use_gpu = use_gpu if use_gpu is not None else (config.gpu_mode != "disabled")

    # Validate inputs
    if dt <= 0:
        raise TNFRValueError(
            f"Integration timestep must be positive, got {dt}",
            context={"dt": dt},
            suggestion="set a positive timestep (dt > 0).",
        )
    if max_steps <= 0:
        raise TNFRValueError(
            f"Max steps must be positive, got {max_steps}",
            context={"max_steps": max_steps},
            suggestion="set max_steps to a positive integer.",
        )

    # Ensure all parameters are resolved (not None)
    dt_resolved = float(dt)
    max_steps_resolved = int(max_steps)
    tolerance_resolved = float(tolerance)

    # Define GPU and CPU integration functions
    def gpu_integration() -> dict[str, Any]:
        """GPU-accelerated integration using unified backend."""
        from ..mathematics.backend import get_backend

        backend = get_backend()

        # Use backend for accelerated computation
        return _integrate_with_backend(
            G, dt_resolved, method, max_steps_resolved, tolerance_resolved, backend
        )

    def cpu_integration() -> dict[str, Any]:
        """CPU fallback integration using NumPy."""
        from ..mathematics.backend import get_backend

        backend = get_backend("numpy")

        return _integrate_with_backend(
            G, dt_resolved, method, max_steps_resolved, tolerance_resolved, backend
        )

    # Execute with automatic GPU fallback
    if use_gpu:
        result, backend_used = execute_with_gpu_fallback(
            gpu_integration, cpu_integration
        )
    else:
        result, backend_used = cpu_integration(), "cpu"

    # Add metadata
    result["backend_used"] = backend_used
    result["parameters"] = {
        "dt": dt,
        "method": method,
        "max_steps": max_steps,
        "tolerance": tolerance,
    }

    return result


def _integrate_with_backend(
    G: Any, dt: float, method: str, max_steps: int, tolerance: float, backend: Any
) -> dict[str, Any]:
    """Internal integration implementation using specified backend."""
    import time

    start_time = time.perf_counter()

    # Extract node states
    nodes = list(G.nodes())
    n_nodes = len(nodes)

    if n_nodes == 0:
        return {"converged": True, "steps": 0, "final_error": 0.0, "time_ms": 0.0}

    # Initialize arrays using backend (canonical alias-aware reads:
    # honour Greek primaries 'νf'/'ΔNFR' as well as ASCII aliases)
    epi_values = backend.as_array(
        [get_attr(G.nodes[node], ALIAS_EPI, 0.0) for node in nodes]
    )
    vf_values = backend.as_array(
        [get_attr(G.nodes[node], ALIAS_VF, 1.0) for node in nodes]
    )
    dnfr_values = backend.as_array(
        [get_attr(G.nodes[node], ALIAS_DNFR, 0.0) for node in nodes]
    )

    converged = False
    final_error = float("inf")

    for step in range(max_steps):
        # Store previous values
        epi_prev = epi_values

        # Compute derivatives using canonical nodal equation
        if method == "euler":
            # Euler method: EPI_{n+1} = EPI_n + dt * νf * ΔNFR
            derivatives = backend.as_array(
                [vf * dnfr for vf, dnfr in zip(vf_values, dnfr_values)]
            )
            epi_values = epi_prev + dt * derivatives

        elif method == "rk4":
            # RK4 method for higher accuracy
            k1 = backend.as_array(
                [vf * dnfr for vf, dnfr in zip(vf_values, dnfr_values)]
            )
            k2 = k1  # Simplified - assume ΔNFR constant over dt
            k3 = k1
            k4 = k1

            epi_values = epi_prev + (dt / 6.0) * (k1 + 2 * k2 + 2 * k3 + k4)

        else:
            raise TNFRValueError(
                f"Unknown integration method: {method}",
                context={"method": method, "available": ["euler", "rk4"]},
                suggestion="Use 'euler' or 'rk4' as the integration method.",
            )

        # Check convergence
        if hasattr(backend, "norm"):
            error = backend.norm(epi_values - epi_prev)
            final_error = backend.to_numpy(error).item()
        else:
            # Fallback norm calculation
            diff = backend.to_numpy(epi_values - epi_prev)
            final_error = float(np.linalg.norm(diff))

        if final_error < tolerance:
            converged = True
            break

    # Update graph with final values (canonical alias-aware write)
    epi_final = backend.to_numpy(epi_values)
    for i, node in enumerate(nodes):
        set_attr(G.nodes[node], ALIAS_EPI, float(epi_final[i]))

    end_time = time.perf_counter()

    return {
        "converged": converged,
        "steps": step + 1,
        "final_error": final_error,
        "time_ms": (end_time - start_time) * 1000.0,
    }