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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/dynamics/propagation.py

propagation.py

Network propagation dynamics for OZ-induced dissonance.

This module implements propagation of dissonance across network neighbors following TNFR resonance principles. When OZ (Dissonance) is applied to a node, structural dissonance propagates through the network based on phase compatibility, frequency matching, and coupling strength.

According to TNFR canonical theory: "Nodal interference: Dissonance between nodes that disrupts coherence. Can induce reorganization or collapse."

OZ introduces topological asymmetry that propagates beyond the local node, potentially triggering bifurcation cascades in phase-compatible neighbors.

References

  • TNFR.pdf §2.3.3: OZ introduces topological dissonance
  • Issue: [OZ] Implement dissonance propagation and neighborhood network effects

Source Code

python
"""Network propagation dynamics for OZ-induced dissonance.

This module implements propagation of dissonance across network neighbors
following TNFR resonance principles. When OZ (Dissonance) is applied to a node,
structural dissonance propagates through the network based on phase compatibility,
frequency matching, and coupling strength.

According to TNFR canonical theory:
    "Nodal interference: Dissonance between nodes that disrupts coherence.
    Can induce reorganization or collapse."

OZ introduces topological asymmetry that propagates beyond the local node,
potentially triggering bifurcation cascades in phase-compatible neighbors.

References
----------
- TNFR.pdf §2.3.3: OZ introduces topological dissonance
- Issue: [OZ] Implement dissonance propagation and neighborhood network effects
"""

from __future__ import annotations

from typing import TYPE_CHECKING

if TYPE_CHECKING:
    from ..types import NodeId, TNFRGraph

from ..alias import get_attr
from ..constants.aliases import ALIAS_DNFR, ALIAS_THETA, ALIAS_VF
from ..constants.canonical import DELTA_PHI_MAX
from ..constants.operational import EMERGENT_FREQ_BALANCE_CANONICAL

__all__ = [
    "propagate_dissonance",
    "compute_network_dissonance_field",
    "detect_bifurcation_cascade",
]


def propagate_dissonance(
    G: TNFRGraph,
    source_node: NodeId,
    dissonance_magnitude: float,
    propagation_mode: str = "phase_weighted",
) -> set[NodeId]:
    """Propagate OZ-induced dissonance to phase-compatible neighbors.

    When OZ is applied to a node, structural dissonance propagates through
    the network following TNFR resonance principles:

    1. **Phase compatibility**: Neighbors with |Δθ| < threshold receive more
    2. **Frequency matching**: Higher νf neighbors respond more strongly
    3. **Coupling strength**: Edge weights modulate propagation
    4. **Distance decay**: Effect diminishes with topological distance

    Parameters
    ----------
    G : TNFRGraph
        Network containing nodes
    source_node : NodeId
        Node where OZ was applied
    dissonance_magnitude : float
        |ΔNFR| increase at source (typically from OZ metrics)
    propagation_mode : str
        'phase_weighted' (default), 'uniform', 'frequency_weighted'

    Returns
    -------
    set[NodeId]
        set of affected neighbor nodes

    Notes
    -----
    Propagation follows coupling physics:

    ΔNFR_neighbor = ΔNFR_source * w_coupling * w_phase * w_frequency

    Where:
    - w_coupling: Edge weight (default 1.0)
    - w_phase: Phase compatibility factor
    - w_frequency: Frequency matching factor

    Examples
    --------
    >>> from tnfr.structural import create_nfr
    >>> from tnfr.operators.definitions import Emission, Dissonance
    >>> from tnfr.dynamics.propagation import propagate_dissonance
    >>>
    >>> G, node0 = create_nfr("source", epi=0.5, vf=1.0)
    >>> # Add neighbors
    >>> for i in range(3):
    ...     G.add_node(f"n{i}")
    ...     G.add_edge(node0, f"n{i}")
    ...     Emission()(G, f"n{i}")
    >>>
    >>> # Apply OZ and propagate
    >>> Dissonance()(G, node0)
    >>> affected = propagate_dissonance(G, node0, 0.15)
    >>> print(f"Affected neighbors: {len(affected)}")

    See Also
    --------
    compute_network_dissonance_field : Compute field with distance decay
    detect_bifurcation_cascade : Detect cascade-triggered bifurcations
    """
    neighbors = list(G.neighbors(source_node))
    if not neighbors:
        return set()

    affected = set()
    source_theta = float(get_attr(G.nodes[source_node], ALIAS_THETA, 0.0))
    source_vf = float(get_attr(G.nodes[source_node], ALIAS_VF, 1.0))

    # Propagation threshold (configurable)
    phase_threshold = float(G.graph.get("OZ_PHASE_THRESHOLD", DELTA_PHI_MAX))
    min_propagation = float(G.graph.get("OZ_MIN_PROPAGATION", 0.05))

    for neighbor in neighbors:
        neighbor_theta = float(get_attr(G.nodes[neighbor], ALIAS_THETA, 0.0))
        neighbor_vf = float(get_attr(G.nodes[neighbor], ALIAS_VF, 1.0))
        neighbor_dnfr = float(get_attr(G.nodes[neighbor], ALIAS_DNFR, 0.0))

        # Compute phase compatibility
        delta_theta = abs(source_theta - neighbor_theta)
        if delta_theta > phase_threshold:
            continue  # Phase incompatible, no propagation

        phase_weight = 1.0 - (delta_theta / phase_threshold)

        # Compute frequency matching
        if propagation_mode == "frequency_weighted":
            freq_ratio = min(neighbor_vf, source_vf) / max(
                neighbor_vf, source_vf, 1e-10
            )
            freq_weight = freq_ratio
        else:
            freq_weight = 1.0

        # Get edge weight (coupling strength)
        edge_data = G.get_edge_data(source_node, neighbor)
        coupling_weight = edge_data.get("weight", 1.0) if edge_data else 1.0

        # Compute propagated dissonance
        propagated_dnfr = (
            dissonance_magnitude * coupling_weight * phase_weight * freq_weight
        )

        if abs(propagated_dnfr) >= min_propagation:
            # Apply propagated dissonance to neighbor
            new_dnfr = neighbor_dnfr + propagated_dnfr
            # Use first alias for consistency
            G.nodes[neighbor][ALIAS_DNFR[0]] = new_dnfr
            affected.add(neighbor)

            # Log propagation for telemetry
            if "_oz_propagation" not in G.nodes[neighbor]:
                G.nodes[neighbor]["_oz_propagation"] = []
            G.nodes[neighbor]["_oz_propagation"].append(
                {
                    "from_node": source_node,
                    "magnitude": propagated_dnfr,
                    "phase_weight": phase_weight,
                    "coupling_weight": coupling_weight,
                }
            )

    return affected


def compute_network_dissonance_field(
    G: TNFRGraph,
    source_node: NodeId,
    radius: int = 2,
) -> dict[NodeId, float]:
    """Compute dissonance field propagation up to radius hops.

    Returns dict mapping node -> dissonance_level for all nodes
    within radius hops of source.

    Parameters
    ----------
    G : TNFRGraph
        Network
    source_node : NodeId
        OZ application point
    radius : int
        Maximum propagation distance (default 2)

    Returns
    -------
    dict[NodeId, float]
        Mapping of affected nodes to dissonance level

    Notes
    -----
    Uses exponential decay: dissonance_level = source_dnfr * (0.5 ** distance)

    Only nodes reachable via paths (connected) are included in the field.

    Examples
    --------
    >>> from tnfr.structural import create_nfr
    >>> from tnfr.operators.definitions import Dissonance
    >>> from tnfr.dynamics.propagation import compute_network_dissonance_field
    >>>
    >>> G, node0 = create_nfr("source")
    >>> # Create path topology: 0-1-2-3
    >>> for i in range(1, 4):
    ...     G.add_node(i)
    ...     G.add_edge(i-1, i)
    >>>
    >>> Dissonance()(G, node0)
    >>> field = compute_network_dissonance_field(G, node0, radius=2)
    >>> # Returns: {1: high, 2: medium} (node 3 beyond radius)
    """
    import networkx as nx

    field = {}
    source_dnfr = abs(float(get_attr(G.nodes[source_node], ALIAS_DNFR, 0.0)))

    # Get decay factor from graph config
    decay_factor = float(
        G.graph.get("OZ_DECAY_FACTOR", EMERGENT_FREQ_BALANCE_CANONICAL)
    )

    # BFS to propagate with distance decay
    # Optimized implementation using single_source_shortest_path_length
    # This is O(N+E) instead of O(R*N*(N+E))
    lengths = nx.single_source_shortest_path_length(G, source_node, cutoff=radius)

    for node, distance in lengths.items():
        if distance == 0:
            continue
        decay = decay_factor**distance
        field[node] = source_dnfr * decay

    return field


def detect_bifurcation_cascade(
    G: TNFRGraph,
    source_node: NodeId,
    threshold: float = EMERGENT_FREQ_BALANCE_CANONICAL,
) -> list[NodeId]:
    """Detect if OZ triggers bifurcation cascade in network.

    When source node undergoes bifurcation (∂²EPI/∂t² > τ), check if
    propagated dissonance pushes neighbors over their own thresholds.

    Parameters
    ----------
    G : TNFRGraph
        Network containing nodes
    source_node : NodeId
        Node where OZ was applied
    threshold : float
        Bifurcation threshold τ (default 0.5)

    Returns
    -------
    list[NodeId]
        Nodes that entered bifurcation state due to cascade

    Notes
    -----
    A node is considered in bifurcation cascade if:
    - It received propagated dissonance from source
    - Its ∂²EPI/∂t² now exceeds threshold τ

    The function marks cascade nodes with `_bifurcation_cascade` metadata
    for telemetry and further analysis.

    Examples
    --------
    >>> from tnfr.structural import create_nfr
    >>> from tnfr.operators.definitions import Emission, Dissonance
    >>> from tnfr.dynamics.propagation import detect_bifurcation_cascade
    >>>
    >>> G, node0 = create_nfr("source", epi=0.5, vf=1.2)
    >>> # Add neighbors with EPI history
    >>> for i in range(3):
    ...     G.add_node(f"n{i}")
    ...     G.add_edge(node0, f"n{i}")
    ...     G.nodes[f"n{i}"]["_epi_history"] = [0.3, 0.45, 0.55]
    >>>
    >>> Dissonance()(G, node0, propagate_to_network=True)
    >>> cascade = detect_bifurcation_cascade(G, node0)
    >>> print(f"Cascade size: {len(cascade)}")

    See Also
    --------
    tnfr.operators.nodal_equation.compute_d2epi_dt2 : Compute structural acceleration
    tnfr.dynamics.bifurcation.get_bifurcation_paths : Identify viable paths
    """
    from ..operators.nodal_equation import compute_d2epi_dt2

    cascade_nodes = []

    # Get neighbors affected by propagation
    neighbors = list(G.neighbors(source_node))

    for neighbor in neighbors:
        # Check if neighbor has propagation record (was affected)
        if "_oz_propagation" not in G.nodes[neighbor]:
            continue

        # Check if neighbor now in bifurcation state
        d2epi_neighbor = compute_d2epi_dt2(G, neighbor)

        if abs(d2epi_neighbor) > threshold:
            cascade_nodes.append(neighbor)

            # Mark for telemetry
            G.nodes[neighbor]["_bifurcation_cascade"] = {
                "triggered_by": source_node,
                "d2epi": d2epi_neighbor,
                "threshold": threshold,
            }

            # set bifurcation_ready flag for path detection
            G.nodes[neighbor]["_bifurcation_ready"] = True

    return cascade_nodes