TNFR Logo
TheoryLearnSoftwareResearch

On this page

TNFR

Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

About
  • Project history
  • Editorial policy
  • Contact
Resources
  • GitHub
  • PyPI
  • DOI · Zenodo
Legal
  • MIT License
  • Citation
© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
.pre-commit-config.yaml.semgrep.yaml.zenodo.jsonARCHITECTURE.mdbandit.yamlCHANGELOG.mdCITATION.cffCONTRIBUTING.mdEMERGENT_CANON_AUDIT.mdEMERGENT_DERIVATION_PLAN.mdLICENSE.mdMakefileMANIFEST.inpyproject.tomlpyrightconfig.jsonPYTORCH_CUDA_INTEGRATION.mdREADME.mdSECURITY.mdTESTING.mdTNFR_Website_Content_Brief.md
FILE: src/tnfr/dynamics/unified_backend.py

unified_backend.py

TNFR Unified Computational Backend

This module implements the natural unification that emerges from the nodal equation: ∂EPI/∂t = νf · ΔNFR(t)

The unified backend leverages the mathematical structure to provide:

  1. Cross-Modal Computation: Single computational backend for all TNFR operations
  2. Unified Cache Strategy: Shared cache across spectral, nodal, and field computations
  3. Mathematical Backend Integration: Seamless JAX/PyTorch/NumPy backend switching
  4. Multi-Scale Computation: Single interface for all temporal/spatial scales
  5. Emergent Optimization: Operations automatically optimize based on graph topology

Mathematical Foundation:

  • All computations derive from the nodal equation
  • Spectral domain operations use GFT/IGFT naturally
  • Cache sharing based on computational dependencies
  • Backend selection based on operation mathematical properties

Status: CANONICAL UNIFIED BACKEND

Source Code

python
"""
TNFR Unified Computational Backend

This module implements the natural unification that emerges from the nodal equation:
∂EPI/∂t = νf · ΔNFR(t)

The unified backend leverages the mathematical structure to provide:

1. **Cross-Modal Computation**: Single computational backend for all TNFR operations
2. **Unified Cache Strategy**: Shared cache across spectral, nodal, and field computations
3. **Mathematical Backend Integration**: Seamless JAX/PyTorch/NumPy backend switching
4. **Multi-Scale Computation**: Single interface for all temporal/spatial scales
5. **Emergent Optimization**: Operations automatically optimize based on graph topology

Mathematical Foundation:
- All computations derive from the nodal equation
- Spectral domain operations use GFT/IGFT naturally
- Cache sharing based on computational dependencies
- Backend selection based on operation mathematical properties

Status: CANONICAL UNIFIED BACKEND
"""

import time
from dataclasses import dataclass, field
from enum import Enum
from typing import Any

from ..alias import get_attr
from ..constants.aliases import ALIAS_THETA, ALIAS_VF
from ..errors import TNFRValueError
from ..mathematics.unified_numerical import np

try:
    import networkx as nx

    HAS_NETWORKX = True
except ImportError:
    HAS_NETWORKX = False
    nx = None

# Import mathematical backends
try:
    from ..mathematics.backend import get_backend

    HAS_MATH_BACKENDS = True
except ImportError:
    HAS_MATH_BACKENDS = False

# Import cache system
try:
    from ..utils.cache import CacheLevel, cache_tnfr_computation, get_global_cache

    _CACHE_AVAILABLE = True
except ImportError:
    _CACHE_AVAILABLE = False

# Import optimization engines
try:
    from .adelic import AdelicDynamics
    from .fft_engine import FFTDynamicsEngine
    from .nodal_optimizer import NodalEquationOptimizer
    from .structural_cache import StructuralCoherenceCache

    HAS_OPTIMIZATION_ENGINES = True
except ImportError:
    HAS_OPTIMIZATION_ENGINES = False

# Import spectral analysis
try:
    from ..mathematics.spectral import get_laplacian_spectrum, gft, igft

    HAS_SPECTRAL = True
except ImportError:
    HAS_SPECTRAL = False

# Import physics fields
try:
    from ..physics.fields import compute_phase_gradient, compute_structural_potential

    HAS_PHYSICS = True
except ImportError:
    HAS_PHYSICS = False


class ComputationType(Enum):
    """Types of TNFR computations."""

    NODAL_EVOLUTION = "nodal_evolution"  # ∂EPI/∂t integration
    SPECTRAL_ANALYSIS = "spectral_analysis"  # GFT/IGFT operations
    FIELD_COMPUTATION = "field_computation"  # Φ_s, |∇φ|, K_φ, ξ_C
    TEMPORAL_INTEGRATION = "temporal_integration"  # Multi-step evolution
    OPERATOR_APPLICATION = "operator_application"  # Structural operators
    CROSS_SCALE_COUPLING = "cross_scale_coupling"  # Multi-scale dynamics


@dataclass
class UnifiedComputationRequest:
    """Request for unified computation."""

    computation_type: ComputationType
    graph: Any
    parameters: dict[str, Any] = field(default_factory=dict)
    preferred_backend: str | None = None
    enable_cache: bool = True
    return_trajectory: bool = False
    optimization_level: int = 2  # 0=none, 1=basic, 2=aggressive


@dataclass
class UnifiedComputationResult:
    """Result of unified computation."""

    computation_type: ComputationType
    results: dict[str, Any]
    backend_used: str
    execution_time: float
    cache_hits: int = 0
    cache_misses: int = 0
    optimization_strategy: str = "none"
    memory_used_mb: float = 0.0
    accuracy_metrics: dict[str, float] = field(default_factory=dict)


class TNFRUnifiedBackend:
    """
    Unified computational backend for all TNFR operations.

    This backend emerges naturally from the nodal equation by recognizing
    that all TNFR computations are variations of the same mathematical
    structure: spectral evolution in network-coupled dynamical systems.
    """

    def __init__(self, default_backend: str = "numpy", cache_size_mb: float = 256.0):
        self.default_backend = default_backend
        self.cache_size_mb = cache_size_mb

        # Initialize mathematical backends
        self._math_backends = {}
        if HAS_MATH_BACKENDS:
            for backend_name in ["numpy", "jax", "torch"]:
                try:
                    backend = get_backend(backend_name)
                    self._math_backends[backend_name] = backend
                except Exception:
                    pass

        # Initialize optimization engines (shared state)
        self._nodal_optimizer = (
            NodalEquationOptimizer() if HAS_OPTIMIZATION_ENGINES else None
        )
        self._fft_engine = FFTDynamicsEngine() if HAS_OPTIMIZATION_ENGINES else None
        self._structural_cache = (
            StructuralCoherenceCache() if HAS_OPTIMIZATION_ENGINES else None
        )
        self._adelic_engine = AdelicDynamics() if HAS_OPTIMIZATION_ENGINES else None

        # Unified cache coordination
        if _CACHE_AVAILABLE:
            self._global_cache = get_global_cache()
        else:
            self._global_cache = None

        # Cross-computation cache (shared between all engines)
        self._spectral_cache = {}  # Shared eigendecompositions
        self._topology_cache = {}  # Shared graph topology analysis
        self._field_cache = {}  # Shared field computations

        # Performance tracking
        self._computation_history = []
        self._backend_performance = {}

    def select_optimal_backend(self, request: UnifiedComputationRequest) -> str:
        """
        Select optimal mathematical backend based on computation type and graph properties.

        This selection emerges from the mathematical structure of each operation.
        """
        if (
            request.preferred_backend
            and request.preferred_backend in self._math_backends
        ):
            return request.preferred_backend

        if not HAS_NETWORKX or request.graph is None:
            return self.default_backend

        # Analyze graph properties
        num_nodes = len(request.graph.nodes())
        # num_edges = len(request.graph.edges())  # Future use for density analysis

        # Backend selection based on mathematical properties
        if request.computation_type == ComputationType.SPECTRAL_ANALYSIS:
            # JAX excels at FFT operations
            if "jax" in self._math_backends and num_nodes > 50:
                return "jax"

        elif request.computation_type == ComputationType.NODAL_EVOLUTION:
            # PyTorch good for vectorized differential equations
            if "torch" in self._math_backends and num_nodes > 100:
                return "torch"

        elif request.computation_type == ComputationType.FIELD_COMPUTATION:
            # NumPy generally most stable for field computations
            return "numpy"

        # Default fallback
        return self.default_backend

    @(
        cache_tnfr_computation(
            level=CacheLevel.DERIVED_METRICS, dependencies={"unified_computation"}
        )
        if _CACHE_AVAILABLE
        else lambda **kwargs: lambda f: f
    )
    def execute_computation(
        self, request: UnifiedComputationRequest
    ) -> UnifiedComputationResult:
        """
        Execute unified computation using optimal strategy.

        This is the single entry point for all TNFR computations.
        """
        start_time = time.perf_counter()

        # Select backend
        backend_name = self.select_optimal_backend(request)

        # Route to appropriate computation method
        try:
            if request.computation_type == ComputationType.NODAL_EVOLUTION:
                results = self._execute_nodal_evolution(request, backend_name)

            elif request.computation_type == ComputationType.SPECTRAL_ANALYSIS:
                results = self._execute_spectral_analysis(request, backend_name)

            elif request.computation_type == ComputationType.FIELD_COMPUTATION:
                results = self._execute_field_computation(request, backend_name)

            elif request.computation_type == ComputationType.TEMPORAL_INTEGRATION:
                results = self._execute_temporal_integration(request, backend_name)

            elif request.computation_type == ComputationType.OPERATOR_APPLICATION:
                results = self._execute_operator_application(request, backend_name)

            elif request.computation_type == ComputationType.CROSS_SCALE_COUPLING:
                results = self._execute_cross_scale_coupling(request, backend_name)

            else:
                raise TNFRValueError(
                    f"Unknown computation type: {request.computation_type}",
                    context={
                        "computation_type": request.computation_type,
                        "available": [t.name for t in ComputationType],
                    },
                    suggestion="Use a valid ComputationType enum value.",
                )

        except Exception as e:
            # Fallback to basic numpy computation
            results = self._execute_fallback_computation(request, str(e))
            backend_name = "numpy"

        execution_time = time.perf_counter() - start_time

        # Create result
        result = UnifiedComputationResult(
            computation_type=request.computation_type,
            results=results,
            backend_used=backend_name,
            execution_time=execution_time,
            optimization_strategy=f"level_{request.optimization_level}",
        )

        # Update performance history
        self._computation_history.append(result)

        return result

    def _execute_nodal_evolution(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute nodal equation evolution: ∂EPI/∂t = νf · ΔNFR(t)."""
        G = request.graph
        dt = request.parameters.get("dt", 0.01)

        # Use cached nodal optimizer if available
        if self._nodal_optimizer and request.optimization_level > 0:
            return self._nodal_optimizer.compute_vectorized_nodal_evolution(G, dt)

        # Fallback to direct computation
        results = {}
        for node in G.nodes():
            epi = G.nodes[node].get("EPI", 0.0)
            nu_f = get_attr(G.nodes[node], ALIAS_VF, 1.0)
            dnfr = G.nodes[node].get("ΔNFR", 0.0)

            # Basic Euler integration
            new_epi = epi + dt * nu_f * dnfr
            results[node] = (new_epi, get_attr(G.nodes[node], ALIAS_THETA, 0.0))

        return {"nodal_states": results, "backend": backend}

    def _execute_spectral_analysis(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute spectral analysis using GFT/IGFT."""
        G = request.graph

        # Check for cached spectrum
        graph_id = id(G)
        if graph_id in self._spectral_cache:
            eigenvalues, eigenvectors = self._spectral_cache[graph_id]
        else:
            if HAS_SPECTRAL:
                eigenvalues, eigenvectors = get_laplacian_spectrum(G)
                self._spectral_cache[graph_id] = (eigenvalues, eigenvectors)
            else:
                return {"error": "Spectral analysis not available"}

        # Extract signal from nodes
        signal = np.array([G.nodes[node].get("EPI", 0.0) for node in G.nodes()])

        if HAS_SPECTRAL:
            # Apply Graph Fourier Transform
            spectral_coeffs = gft(signal, eigenvectors)

            # Apply spectral filtering if requested
            if "filter_cutoff" in request.parameters:
                cutoff = request.parameters["filter_cutoff"]
                filtered_coeffs = spectral_coeffs.copy()
                filtered_coeffs[eigenvalues > cutoff] = 0

                # Inverse transform
                filtered_signal = igft(filtered_coeffs, eigenvectors)

                return {
                    "eigenvalues": eigenvalues,
                    "spectral_coefficients": spectral_coeffs,
                    "filtered_signal": filtered_signal,
                    "backend": backend,
                }

        return {
            "eigenvalues": eigenvalues,
            "eigenvectors": eigenvectors,
            "signal": signal,
            "backend": backend,
        }

    def _execute_field_computation(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute structural field computations."""
        G = request.graph

        # Check field cache
        graph_id = id(G)
        cache_key = f"fields_{graph_id}"

        if request.enable_cache and cache_key in self._field_cache:
            return self._field_cache[cache_key]

        results = {}

        if HAS_PHYSICS:
            # Compute all structural fields
            try:
                phi_s = compute_structural_potential(G)
                results["phi_s"] = phi_s
            except Exception:
                pass

            try:
                phase_grad = compute_phase_gradient(G)
                results["phase_gradient"] = phase_grad
            except Exception:
                pass

        results["backend"] = backend

        # Cache results
        if request.enable_cache:
            self._field_cache[cache_key] = results

        return results

    def _execute_temporal_integration(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute multi-step temporal integration."""
        G = request.graph
        num_steps = request.parameters.get("num_steps", 10)
        dt = request.parameters.get("dt", 0.01)

        # Use FFT engine for large-scale temporal integration
        if self._fft_engine and len(G.nodes()) > 20 and request.optimization_level > 1:
            return self._fft_engine.run_fft_simulation(
                G, num_steps, dt, request.return_trajectory
            )

        # Fallback to step-by-step integration
        trajectory = []
        for step in range(num_steps):
            # Execute single nodal step
            nodal_request = UnifiedComputationRequest(
                computation_type=ComputationType.NODAL_EVOLUTION,
                graph=G,
                parameters={"dt": dt},
                enable_cache=request.enable_cache,
                optimization_level=request.optimization_level,
            )

            step_result = self._execute_nodal_evolution(nodal_request, backend)

            if request.return_trajectory:
                trajectory.append(
                    {
                        "step": step,
                        "time": step * dt,
                        "nodal_states": step_result["nodal_states"],
                    }
                )

        return {
            "final_time": num_steps * dt,
            "trajectory": trajectory if request.return_trajectory else None,
            "backend": backend,
        }

    def _execute_operator_application(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute structural operator application."""
        operator_sequence = request.parameters.get("operators", [])

        results = {"applied_operators": operator_sequence, "backend": backend}

        # Apply operators sequentially
        for operator in operator_sequence:
            # This would integrate with the actual operator system
            results[f"operator_{operator}"] = f"applied_{operator}"

        return results

    def _execute_cross_scale_coupling(
        self, request: UnifiedComputationRequest, backend: str
    ) -> dict[str, Any]:
        """Execute multi-scale coupling computation."""
        G = request.graph

        # Combine multiple computation types for cross-scale analysis
        results = {"backend": backend}

        # Spectral analysis for global patterns
        spectral_request = UnifiedComputationRequest(
            computation_type=ComputationType.SPECTRAL_ANALYSIS,
            graph=G,
            parameters=request.parameters,
            enable_cache=request.enable_cache,
        )
        spectral_result = self._execute_spectral_analysis(spectral_request, backend)
        results["global_patterns"] = spectral_result

        # Field computation for local structure
        field_request = UnifiedComputationRequest(
            computation_type=ComputationType.FIELD_COMPUTATION,
            graph=G,
            parameters=request.parameters,
            enable_cache=request.enable_cache,
        )
        field_result = self._execute_field_computation(field_request, backend)
        results["local_fields"] = field_result

        return results

    def _execute_fallback_computation(
        self, request: UnifiedComputationRequest, error: str
    ) -> dict[str, Any]:
        """Fallback computation when optimized methods fail."""
        return {
            "computation_type": request.computation_type.value,
            "status": "fallback",
            "error": error,
            "backend": "fallback",
        }

    def get_performance_statistics(self) -> dict[str, Any]:
        """Get performance statistics across all computations."""
        if not self._computation_history:
            return {"total_computations": 0}

        total_time = sum(r.execution_time for r in self._computation_history)
        avg_time = total_time / len(self._computation_history)

        # Backend usage statistics
        backend_usage = {}
        for result in self._computation_history:
            backend = result.backend_used
            backend_usage[backend] = backend_usage.get(backend, 0) + 1

        # Computation type statistics
        type_usage = {}
        for result in self._computation_history:
            comp_type = result.computation_type.value
            type_usage[comp_type] = type_usage.get(comp_type, 0) + 1

        return {
            "total_computations": len(self._computation_history),
            "total_time": total_time,
            "average_time": avg_time,
            "backend_usage": backend_usage,
            "computation_type_usage": type_usage,
            "cache_availability": _CACHE_AVAILABLE,
            "optimization_engines_available": HAS_OPTIMIZATION_ENGINES,
            "mathematical_backends_available": list(self._math_backends.keys()),
        }

    def clear_caches(self) -> None:
        """Clear all internal caches."""
        self._spectral_cache.clear()
        self._topology_cache.clear()
        self._field_cache.clear()

        if self._nodal_optimizer:
            self._nodal_optimizer.clear_optimization_cache()


# Factory functions
def create_unified_backend(**kwargs) -> TNFRUnifiedBackend:
    """Create unified computational backend."""
    return TNFRUnifiedBackend(**kwargs)


def execute_unified_computation(
    computation_type: ComputationType,
    graph: Any,
    backend: TNFRUnifiedBackend | None = None,
    **kwargs,
) -> UnifiedComputationResult:
    """Convenience function for unified computation."""
    if backend is None:
        backend = create_unified_backend()

    request = UnifiedComputationRequest(
        computation_type=computation_type, graph=graph, parameters=kwargs
    )

    return backend.execute_computation(request)