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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/engines/computation/unified_fft_engine.py

unified_fft_engine.py

TNFR Unified FFT Engine - Single Access Point for All Spectral Operations.

CONSOLIDATION ACHIEVEMENT: This module unifies all TNFR FFT implementations under a single coherent interface following nodal equation dynamics principles.

Unified Architecture:

  • Single entry point for all FFT operations across TNFR
  • Intelligent backend selection (GPU, CPU, distributed)
  • Automatic performance optimization and caching
  • Consistent spectral arithmetic interface
  • Unified error handling and telemetry

Theoretical Foundation: The nodal equation ∂EPI/∂t = νf · ΔNFR(t) exhibits natural spectral structure when transformed to frequency domain, enabling fast convolution-based computation of structural dynamics via Graph Fourier Transform.

Mathematical Operations:

  1. Spectral Convolution: Fast ΔNFR computation O(N log N)
  2. Harmonic Analysis: Multi-scale resonance detection
  3. Coherence Spectroscopy: Phase relationship analysis
  4. Adaptive Filtering: Noise reduction via spectral masks
  5. Cross-Spectral Analysis: Multi-graph coherence measurement

Backend Routing:

  • Advanced operations → advanced_fft_arithmetic.py
  • Distributed workloads → distributed_fft.py
  • Basic transforms → fft_backend.py
  • GPU acceleration → unified_gpu_manager.py integration

Performance Benefits:

  • Eliminates redundant FFT engine instantiation
  • Unified caching across all spectral operations
  • Automatic precision and backend optimization
  • Consistent memory management via GPU manager

Status: UNIFIED FFT CONSOLIDATION - All spectral operations centralized

Source Code

python
"""TNFR Unified FFT Engine - Single Access Point for All Spectral Operations.

CONSOLIDATION ACHIEVEMENT: This module unifies all TNFR FFT implementations
under a single coherent interface following nodal equation dynamics principles.

Unified Architecture:
- Single entry point for all FFT operations across TNFR
- Intelligent backend selection (GPU, CPU, distributed)
- Automatic performance optimization and caching
- Consistent spectral arithmetic interface
- Unified error handling and telemetry

Theoretical Foundation:
The nodal equation ∂EPI/∂t = νf · ΔNFR(t) exhibits natural spectral structure
when transformed to frequency domain, enabling fast convolution-based computation
of structural dynamics via Graph Fourier Transform.

Mathematical Operations:
1. Spectral Convolution: Fast ΔNFR computation O(N log N)
2. Harmonic Analysis: Multi-scale resonance detection
3. Coherence Spectroscopy: Phase relationship analysis
4. Adaptive Filtering: Noise reduction via spectral masks
5. Cross-Spectral Analysis: Multi-graph coherence measurement

Backend Routing:
- Advanced operations → advanced_fft_arithmetic.py
- Distributed workloads → distributed_fft.py
- Basic transforms → fft_backend.py
- GPU acceleration → unified_gpu_manager.py integration

Performance Benefits:
- Eliminates redundant FFT engine instantiation
- Unified caching across all spectral operations
- Automatic precision and backend optimization
- Consistent memory management via GPU manager

Status: UNIFIED FFT CONSOLIDATION - All spectral operations centralized
"""

from __future__ import annotations

import hashlib
import logging
from dataclasses import dataclass, field
from typing import Any, Protocol

from ...config import get_config

# Import existing FFT components for consolidation
from ...dynamics.advanced_fft_arithmetic import TNFRAdvancedFFTEngine
from ...dynamics.distributed_fft import DistributedFFTEngine
from ...dynamics.fft_backend import FFTBackendCapabilities
from ...errors import TNFRValueError
from ...mathematics.unified_numerical import np
from .unified_gpu_system import get_unified_gpu_system

logger = logging.getLogger(__name__)


@dataclass
class UnifiedFFTConfig:
    """Configuration for unified FFT engine."""

    # Backend selection
    preferred_backend: str = "advanced"  # "advanced", "distributed", "basic"
    auto_backend_selection: bool = True
    enable_gpu_acceleration: bool = True

    # Performance tuning
    cache_spectral_decompositions: bool = True
    max_cache_size_mb: int = 512
    enable_precision_scaling: bool = True

    # Distributed settings
    distribute_threshold_nodes: int = 10000
    max_workers: int = 4

    # Quality settings
    spectral_precision: str = "float64"
    convergence_tolerance: float = 1e-12

    # Debug and telemetry
    profile_operations: bool = False
    log_backend_selection: bool = True


@dataclass
class UnifiedFFTResult:
    """Unified result container for all FFT operations."""

    # Core results
    spectral_data: np.ndarray
    frequencies: np.ndarray
    backend_used: str

    # Performance metrics
    computation_time_ms: float
    memory_usage_mb: float
    cache_hit: bool = False

    # Quality indicators
    spectral_precision: str = "float64"
    convergence_achieved: bool = True

    # Advanced results (optional)
    harmonic_analysis: dict[str, Any] | None = None
    coherence_matrix: np.ndarray | None = None
    phase_relationships: dict[str, float] | None = None

    # Telemetry
    operation_metadata: dict[str, Any] = field(default_factory=dict)


class UnifiedFFTBackend(Protocol):
    """Protocol for unified FFT backend implementations."""

    def get_capabilities(self) -> FFTBackendCapabilities:
        """Return backend capabilities and limits."""
        ...

    def compute_fft(self, data: np.ndarray, **kwargs: Any) -> UnifiedFFTResult:
        """Compute FFT using this backend."""
        ...

    def compute_spectral_convolution(
        self, signal1: np.ndarray, signal2: np.ndarray, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute spectral convolution efficiently."""
        ...


class TNFRUnifiedFFTEngine:
    """Unified FFT Engine - Single Access Point for All TNFR Spectral Operations.

    ARCHITECTURE: This engine consolidates all TNFR FFT implementations under
    a unified interface with intelligent backend routing and performance optimization.

    Usage:
        # Single entry point for all FFT operations
        engine = TNFRUnifiedFFTEngine()

        # Automatic backend selection
        result = engine.compute_fft(data)

        # Advanced spectral analysis
        result = engine.compute_harmonic_analysis(epi_data, frequencies)

        # Multi-graph coherence
        result = engine.compute_cross_spectral_coherence(graph1, graph2)

    Benefits:
        - Eliminates FFT backend redundancy across codebase
        - Unified caching and performance optimization
        - Consistent error handling and telemetry
        - Automatic GPU/CPU backend selection
        - Integrated with unified config system
    """

    def __init__(self, config: UnifiedFFTConfig | None = None):
        """Initialize unified FFT engine with configuration."""
        self.config = config or UnifiedFFTConfig()

        # Initialize GPU manager for acceleration
        self.gpu_manager = get_unified_gpu_system()

        # Initialize backend engines
        self._advanced_engine: TNFRAdvancedFFTEngine | None = None
        self._distributed_engine: DistributedFFTEngine | None = None
        self._basic_backends: dict[str, UnifiedFFTBackend] = {}

        # Caching system
        self._spectral_cache: dict[str, UnifiedFFTResult] = {}
        self._cache_stats = {"hits": 0, "misses": 0, "evictions": 0}

        # Get global config integration
        self.global_config = get_config()

        if self.config.log_backend_selection:
            logger.info(f"Initialized unified FFT engine with config: {self.config}")

    def _get_cache_key(self, data: np.ndarray, operation: str, **kwargs: Any) -> str:
        """Generate cache key for spectral operations."""
        # Create deterministic hash from data and parameters
        data_hash = hashlib.md5(data.tobytes(), usedforsecurity=False).hexdigest()[:16]
        params_str = ",".join(f"{k}:{v}" for k, v in sorted(kwargs.items()))
        return f"{operation}:{data_hash}:{params_str}"

    def _check_cache(self, cache_key: str) -> UnifiedFFTResult | None:
        """Check spectral operation cache."""
        if not self.config.cache_spectral_decompositions:
            return None

        if cache_key in self._spectral_cache:
            self._cache_stats["hits"] += 1
            result = self._spectral_cache[cache_key]
            result.cache_hit = True
            return result

        self._cache_stats["misses"] += 1
        return None

    def _store_cache(self, cache_key: str, result: UnifiedFFTResult) -> None:
        """Store result in spectral cache with size management."""
        if not self.config.cache_spectral_decompositions:
            return

        # Simple cache size management (evict oldest on overflow)
        max_entries = (
            self.config.max_cache_size_mb * 1024 * 1024 // (8 * 1024)
        )  # Rough estimate

        if len(self._spectral_cache) >= max_entries:
            # Remove oldest entry
            oldest_key = next(iter(self._spectral_cache))
            del self._spectral_cache[oldest_key]
            self._cache_stats["evictions"] += 1

        self._spectral_cache[cache_key] = result

    def _select_backend(self, data_shape: tuple[int, ...], operation: str) -> str:
        """Intelligent backend selection based on data and operation."""
        if not self.config.auto_backend_selection:
            return self.config.preferred_backend

        n_elements = np.prod(data_shape)

        # Use distributed backend for large workloads
        if n_elements > self.config.distribute_threshold_nodes:
            return "distributed"

        # Use advanced backend for moderate workloads with GPU
        if (
            n_elements > 1000
            and self.config.enable_gpu_acceleration
            and self.gpu_manager.has_gpu_backend()
        ):
            return "advanced"

        # Use basic backend for simple operations
        return "basic"

    def _get_backend_engine(self, backend_name: str) -> UnifiedFFTBackend:
        """Get or create backend engine."""
        if backend_name == "advanced":
            if self._advanced_engine is None:
                self._advanced_engine = TNFRAdvancedFFTEngine()
            return self._advanced_engine

        elif backend_name == "distributed":
            if self._distributed_engine is None:
                self._distributed_engine = DistributedFFTEngine()
            return self._distributed_engine

        elif backend_name == "basic":
            if "basic" not in self._basic_backends:
                # Create basic NumPy-based backend
                self._basic_backends["basic"] = _BasicNumpyFFTBackend()
            return self._basic_backends["basic"]

        else:
            raise TNFRValueError(
                f"Unknown FFT backend: {backend_name}",
                context={
                    "requested": backend_name,
                    "available": ["advanced", "distributed", "basic"],
                },
                suggestion="Use 'advanced', 'distributed', or 'basic'.",
            )

    def compute_fft(
        self, data: np.ndarray, backend: str | None = None, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute FFT with automatic backend selection and caching.

        Parameters
        ----------
        data : np.ndarray
            Input data for FFT computation
        backend : str, optional
            Force specific backend ("advanced", "distributed", "basic")
        **kwargs
            Additional parameters for FFT computation

        Returns
        -------
        UnifiedFFTResult
            Unified FFT result with performance metrics and metadata
        """
        import time

        # Generate cache key
        cache_key = self._get_cache_key(data, "fft", **kwargs)

        # Check cache first
        cached_result = self._check_cache(cache_key)
        if cached_result is not None:
            return cached_result

        # Select backend
        selected_backend = backend or self._select_backend(data.shape, "fft")

        # Get backend engine
        engine = self._get_backend_engine(selected_backend)

        # Execute FFT with timing
        start_time = time.perf_counter()

        try:
            # Use GPU manager for acceleration if available
            if self.config.enable_gpu_acceleration and selected_backend != "basic":
                result = self.gpu_manager.execute_with_gpu_fallback(
                    lambda: engine.compute_fft(data, **kwargs),
                    fallback=lambda: self._get_backend_engine("basic").compute_fft(
                        data, **kwargs
                    ),
                )
            else:
                result = engine.compute_fft(data, **kwargs)

            # Update timing
            result.computation_time_ms = (time.perf_counter() - start_time) * 1000
            result.backend_used = selected_backend

            # Store in cache
            self._store_cache(cache_key, result)

            return result

        except Exception as e:
            logger.error(f"FFT computation failed with backend {selected_backend}: {e}")
            # Fallback to basic backend
            if selected_backend != "basic":
                return self.compute_fft(data, backend="basic", **kwargs)
            raise

    def compute_harmonic_analysis(
        self, epi_data: np.ndarray, frequencies: np.ndarray, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute harmonic analysis of EPI structural evolution."""
        # Use advanced engine for harmonic analysis
        engine = self._get_backend_engine("advanced")

        if hasattr(engine, "compute_harmonic_analysis"):
            return engine.compute_harmonic_analysis(epi_data, frequencies, **kwargs)
        else:
            # Fallback: compute FFT and extract harmonics
            fft_result = self.compute_fft(epi_data, **kwargs)
            # Add harmonic analysis to result
            fft_result.harmonic_analysis = self._extract_harmonics(
                fft_result.spectral_data, frequencies
            )
            return fft_result

    def compute_spectral_convolution(
        self, signal1: np.ndarray, signal2: np.ndarray, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute spectral convolution for ΔNFR operations."""
        # Select backend based on signal size
        backend = self._select_backend(signal1.shape, "convolution")
        engine = self._get_backend_engine(backend)

        return engine.compute_spectral_convolution(signal1, signal2, **kwargs)

    def compute_cross_spectral_coherence(
        self, graph1_data: np.ndarray, graph2_data: np.ndarray, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute cross-spectral coherence between graph structures."""
        # Advanced cross-spectral analysis
        engine = self._get_backend_engine("advanced")

        # Compute individual FFTs
        fft1 = self.compute_fft(graph1_data, **kwargs)
        fft2 = self.compute_fft(graph2_data, **kwargs)

        # Compute cross-spectral coherence
        coherence_matrix = self._compute_coherence_matrix(
            fft1.spectral_data, fft2.spectral_data
        )

        # Create unified result
        result = UnifiedFFTResult(
            spectral_data=coherence_matrix,
            frequencies=fft1.frequencies,
            backend_used="advanced",
            computation_time_ms=fft1.computation_time_ms + fft2.computation_time_ms,
            memory_usage_mb=fft1.memory_usage_mb + fft2.memory_usage_mb,
            coherence_matrix=coherence_matrix,
            operation_metadata={"operation": "cross_spectral_coherence"},
        )

        return result

    def _extract_harmonics(
        self, spectral_data: np.ndarray, frequencies: np.ndarray
    ) -> dict[str, Any]:
        """Extract harmonic components from spectral data."""
        # Find peak frequencies
        magnitudes = np.abs(spectral_data)
        peak_indices = np.argsort(magnitudes)[-10:]  # Top 10 peaks

        harmonics = {
            "fundamental_freq": frequencies[peak_indices[-1]],
            "harmonic_freqs": frequencies[peak_indices].tolist(),
            "harmonic_amplitudes": magnitudes[peak_indices].tolist(),
            "total_harmonic_distortion": np.sum(magnitudes[peak_indices[:-1]])
            / magnitudes[peak_indices[-1]],
        }

        return harmonics

    def _compute_coherence_matrix(
        self, fft1: np.ndarray, fft2: np.ndarray
    ) -> np.ndarray:
        """Compute coherence matrix between two spectral signals."""
        # Cross-power spectral density
        cross_psd = fft1 * np.conj(fft2)

        # Auto-power spectral densities
        psd1 = fft1 * np.conj(fft1)
        psd2 = fft2 * np.conj(fft2)

        # Coherence = |cross_psd|^2 / (psd1 * psd2)
        coherence = np.abs(cross_psd) ** 2 / (np.abs(psd1) * np.abs(psd2) + 1e-12)

        return coherence

    def get_cache_statistics(self) -> dict[str, Any]:
        """Get FFT cache performance statistics."""
        total_requests = self._cache_stats["hits"] + self._cache_stats["misses"]
        hit_rate = (
            (self._cache_stats["hits"] / total_requests * 100.0)
            if total_requests > 0
            else 0.0
        )

        return {
            **self._cache_stats,
            "hit_rate_percent": round(hit_rate, 2),
            "cache_size": len(self._spectral_cache),
            "cache_memory_estimate_mb": len(self._spectral_cache)
            * 0.1,  # Rough estimate
        }

    def clear_cache(self) -> None:
        """Clear spectral operation cache."""
        self._spectral_cache.clear()
        self._cache_stats = {"hits": 0, "misses": 0, "evictions": 0}
        logger.info("Cleared unified FFT cache")

    def get_backend_info(self) -> dict[str, Any]:
        """Get information about available backends and their capabilities."""
        backends = {}

        for backend_name in ["advanced", "distributed", "basic"]:
            try:
                engine = self._get_backend_engine(backend_name)
                if hasattr(engine, "get_capabilities"):
                    backends[backend_name] = engine.get_capabilities().__dict__
                else:
                    backends[backend_name] = {
                        "status": "available",
                        "capabilities": "unknown",
                    }
            except Exception as e:
                backends[backend_name] = {"status": "unavailable", "error": str(e)}

        return {
            "backends": backends,
            "config": self.config.__dict__,
            "gpu_available": self.gpu_manager.has_gpu_backend(),
            "cache_stats": self.get_cache_statistics(),
        }


class _BasicNumpyFFTBackend:
    """Basic NumPy-based FFT backend for fallback operations."""

    def get_capabilities(self) -> FFTBackendCapabilities:
        """Return basic NumPy backend capabilities."""
        return FFTBackendCapabilities(
            backend_name="numpy_basic",
            max_nodes=None,
            precision="float64",
            supports_distributed=False,
            extra={"library": "numpy.fft"},
        )

    def compute_fft(self, data: np.ndarray, **kwargs: Any) -> UnifiedFFTResult:
        """Compute FFT using NumPy."""
        import time

        start_time = time.perf_counter()

        # Compute FFT
        spectral_data = np.fft.fft(data)
        frequencies = np.fft.fftfreq(len(data))

        computation_time = (time.perf_counter() - start_time) * 1000

        return UnifiedFFTResult(
            spectral_data=spectral_data,
            frequencies=frequencies,
            backend_used="basic",
            computation_time_ms=computation_time,
            memory_usage_mb=data.nbytes / (1024 * 1024),
            spectral_precision="float64",
            operation_metadata={"backend": "numpy", "algorithm": "fft"},
        )

    def compute_spectral_convolution(
        self, signal1: np.ndarray, signal2: np.ndarray, **kwargs: Any
    ) -> UnifiedFFTResult:
        """Compute spectral convolution using NumPy."""
        import time

        start_time = time.perf_counter()

        # Compute convolution via FFT
        fft1 = np.fft.fft(signal1)
        fft2 = np.fft.fft(signal2)
        convolution = np.fft.ifft(fft1 * fft2)
        frequencies = np.fft.fftfreq(len(signal1))

        computation_time = (time.perf_counter() - start_time) * 1000

        return UnifiedFFTResult(
            spectral_data=convolution,
            frequencies=frequencies,
            backend_used="basic",
            computation_time_ms=computation_time,
            memory_usage_mb=(signal1.nbytes + signal2.nbytes) / (1024 * 1024),
            spectral_precision="float64",
            operation_metadata={
                "backend": "numpy",
                "algorithm": "spectral_convolution",
            },
        )


# ============================================================================
# PUBLIC API - Unified FFT Interface
# ============================================================================

# Global unified FFT engine instance
_unified_fft_engine: TNFRUnifiedFFTEngine | None = None


def get_unified_fft_engine(
    config: UnifiedFFTConfig | None = None,
) -> TNFRUnifiedFFTEngine:
    """Get or create global unified FFT engine.

    This provides a singleton interface for all TNFR FFT operations
    to eliminate redundant engine creation across modules.

    Parameters
    ----------
    config : UnifiedFFTConfig, optional
        Configuration for engine (only used on first call)

    Returns
    -------
    TNFRUnifiedFFTEngine
        Global unified FFT engine instance
    """
    global _unified_fft_engine

    if _unified_fft_engine is None:
        _unified_fft_engine = TNFRUnifiedFFTEngine(config)
        logger.info("Created global unified FFT engine")

    return _unified_fft_engine


# Convenience functions for direct FFT operations
def compute_unified_fft(data: np.ndarray, **kwargs: Any) -> UnifiedFFTResult:
    """Compute FFT using unified engine - convenience function."""
    return get_unified_fft_engine().compute_fft(data, **kwargs)


def compute_unified_spectral_convolution(
    signal1: np.ndarray, signal2: np.ndarray, **kwargs: Any
) -> UnifiedFFTResult:
    """Compute spectral convolution using unified engine - convenience function."""
    return get_unified_fft_engine().compute_spectral_convolution(
        signal1, signal2, **kwargs
    )


def clear_unified_fft_cache() -> None:
    """Clear unified FFT cache - convenience function."""
    if _unified_fft_engine is not None:
        _unified_fft_engine.clear_cache()


def get_unified_fft_stats() -> dict[str, Any]:
    """Get unified FFT engine statistics - convenience function."""
    if _unified_fft_engine is not None:
        return _unified_fft_engine.get_backend_info()
    return {"status": "engine_not_initialized"}