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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/mathematics/epi.py

epi.py

EPI elements and algebraic helpers for the TNFR Banach space.

Source Code

python
"""EPI elements and algebraic helpers for the TNFR Banach space."""

from __future__ import annotations

from dataclasses import dataclass
from typing import TYPE_CHECKING, Callable, Mapping, Sequence

from .unified_numerical import TNFRValueError, np

if TYPE_CHECKING:
    from .spaces import BanachSpaceEPI

__all__ = [
    "BEPIElement",
    "CoherenceEvaluation",
    "evaluate_coherence_transform",
]


class _EPIValidators:
    """Shared validation helpers for EPI Banach constructions."""

    _complex_dtype = np.complex128

    @staticmethod
    def _as_array(
        values: Sequence[complex] | np.ndarray, *, dtype: np.dtype
    ) -> np.ndarray:
        array = np.asarray(values, dtype=dtype)
        if array.ndim != 1:
            raise TNFRValueError(
                "Inputs must be one-dimensional arrays.",
                context={"ndim": array.ndim},
                suggestion="Provide a 1D array.",
            )
        if not np.all(np.isfinite(array)):
            raise TNFRValueError(
                "Inputs must not contain NaNs or infinities.",
                context={"finite": False},
                suggestion="Check input data for validity.",
            )
        return array

    @classmethod
    def _validate_grid(
        cls, grid: Sequence[float] | np.ndarray, expected_size: int
    ) -> np.ndarray:
        array = np.asarray(grid, dtype=float)
        if array.ndim != 1:
            raise TNFRValueError(
                "x_grid must be one-dimensional.",
                context={"ndim": array.ndim},
                suggestion="Provide a 1D grid.",
            )
        if array.size != expected_size:
            raise TNFRValueError(
                "x_grid length must match continuous component.",
                context={"grid_size": array.size, "expected_size": expected_size},
                suggestion="Ensure grid size matches data size.",
            )
        if array.size < 2:
            raise TNFRValueError(
                "x_grid must contain at least two points.",
                context={"grid_size": array.size},
                suggestion="Provide a grid with at least 2 points.",
            )
        if not np.all(np.isfinite(array)):
            raise TNFRValueError(
                "x_grid must not contain NaNs or infinities.",
                context={"finite": False},
                suggestion="Check grid data for validity.",
            )

        spacings = np.diff(array)
        if np.any(spacings <= 0):
            raise TNFRValueError(
                "x_grid must be strictly increasing.",
                context={"monotonic": False},
                suggestion="Ensure grid points are sorted and unique.",
            )
        if not np.allclose(spacings, spacings[0], rtol=1e-9, atol=1e-12):
            raise TNFRValueError(
                "x_grid must be uniform for finite-difference stability.",
                context={"uniform": False},
                suggestion="Provide a uniformly spaced grid.",
            )
        return array

    @classmethod
    def validate_domain(
        cls,
        f_continuous: Sequence[complex] | np.ndarray,
        a_discrete: Sequence[complex] | np.ndarray,
        x_grid: Sequence[float] | np.ndarray | None = None,
    ) -> tuple[np.ndarray, np.ndarray, np.ndarray | None]:
        """Validate dimensionality and sampling grid compatibility."""

        f_array = cls._as_array(f_continuous, dtype=cls._complex_dtype)
        a_array = cls._as_array(a_discrete, dtype=cls._complex_dtype)

        if x_grid is None:
            return f_array, a_array, None

        grid_array = cls._validate_grid(x_grid, f_array.size)
        return f_array, a_array, grid_array


@dataclass(frozen=True)
class BEPIElement(_EPIValidators):
    r"""Concrete :math:`C^0([0,1]) \oplus \ell^2` element with TNFR operations."""

    f_continuous: Sequence[complex] | np.ndarray
    a_discrete: Sequence[complex] | np.ndarray
    x_grid: Sequence[float] | np.ndarray

    def __post_init__(self) -> None:
        f_array, a_array, grid = self.validate_domain(
            self.f_continuous, self.a_discrete, self.x_grid
        )
        if grid is None:
            raise TNFRValueError(
                "x_grid is mandatory for BEPIElement instances.",
                context={"grid": None},
                suggestion="Provide a valid x_grid.",
            )
        object.__setattr__(self, "f_continuous", f_array)
        object.__setattr__(self, "a_discrete", a_array)
        object.__setattr__(self, "x_grid", grid)

    def _assert_compatible(self, other: BEPIElement) -> None:
        if self.f_continuous.shape != other.f_continuous.shape:
            raise TNFRValueError(
                "Continuous components must share shape for direct sums.",
                context={
                    "self_shape": self.f_continuous.shape,
                    "other_shape": other.f_continuous.shape,
                },
                suggestion="Ensure continuous components have matching shapes.",
            )
        if self.a_discrete.shape != other.a_discrete.shape:
            raise TNFRValueError(
                "Discrete tails must share shape for direct sums.",
                context={
                    "self_shape": self.a_discrete.shape,
                    "other_shape": other.a_discrete.shape,
                },
                suggestion="Ensure discrete components have matching shapes.",
            )
        if not np.allclose(self.x_grid, other.x_grid, rtol=1e-12, atol=1e-12):
            raise TNFRValueError(
                "x_grid must match to combine EPI elements.",
                context={"grid_match": False},
                suggestion="Ensure both elements share the same grid.",
            )

    def direct_sum(self, other: BEPIElement) -> BEPIElement:
        """Return the algebraic direct sum ``self ⊕ other``."""

        self._assert_compatible(other)
        return BEPIElement(
            self.f_continuous + other.f_continuous,
            self.a_discrete + other.a_discrete,
            self.x_grid,
        )

    def tensor(self, vector: Sequence[complex] | np.ndarray) -> np.ndarray:
        """Return the tensor product between the discrete tail and a Hilbert vector."""

        hilbert_vector = self._as_array(vector, dtype=self._complex_dtype)
        return np.outer(self.a_discrete, hilbert_vector)

    def adjoint(self) -> BEPIElement:
        """Return the conjugate element representing the ``*`` operation."""

        return BEPIElement(
            np.conjugate(self.f_continuous), np.conjugate(self.a_discrete), self.x_grid
        )

    @staticmethod
    def _apply_transform(
        transform: Callable[[np.ndarray], np.ndarray], values: np.ndarray
    ) -> np.ndarray:
        result = np.asarray(transform(values), dtype=np.complex128)
        if result.shape != values.shape:
            raise TNFRValueError(
                "Transforms must preserve the element shape.",
                context={"input_shape": values.shape, "output_shape": result.shape},
                suggestion="Ensure transform preserves shape.",
            )
        if not np.all(np.isfinite(result)):
            raise TNFRValueError(
                "Transforms must return finite values.",
                context={"finite": False},
                suggestion="Check transform for singularities.",
            )
        return result

    def compose(
        self,
        transform: Callable[[np.ndarray], np.ndarray],
        *,
        spectral_transform: Callable[[np.ndarray], np.ndarray] | None = None,
    ) -> BEPIElement:
        """Compose the element with linear transforms on both components."""

        new_f = self._apply_transform(transform, self.f_continuous)
        spectral_fn = spectral_transform or transform
        new_a = self._apply_transform(spectral_fn, self.a_discrete)
        return BEPIElement(new_f, new_a, self.x_grid)

    def _max_magnitude(self) -> float:
        mags = []
        if self.f_continuous.size:
            mags.append(float(np.max(np.abs(self.f_continuous))))
        if self.a_discrete.size:
            mags.append(float(np.max(np.abs(self.a_discrete))))
        return float(max(mags)) if mags else 0.0

    def __float__(self) -> float:
        return self._max_magnitude()

    def __abs__(self) -> float:
        return self._max_magnitude()

    def __getstate__(self) -> dict[str, tuple[complex, ...] | tuple[float, ...]]:
        """Serialize BEPIElement to a JSON-compatible dict with real/imag pairs.

        This method enables pickle, JSON, and YAML serialization while preserving
        TNFR invariant #1 (Nodal Equation Integrity, EPI as coherent form) and #3 (Multi-Scale Fractality).
        """
        # Convert numpy arrays to lists for serialization
        continuous = self.f_continuous.tolist()
        discrete = self.a_discrete.tolist()
        grid = self.x_grid.tolist()

        return {
            "continuous": tuple(continuous),
            "discrete": tuple(discrete),
            "grid": tuple(grid),
        }

    def __setstate__(
        self, state: dict[str, tuple[complex, ...] | tuple[float, ...]]
    ) -> None:
        """Deserialize BEPIElement from a dict representation.

        Restores the structural integrity by validating and converting back to numpy arrays.
        """
        f_array, a_array, grid = self.validate_domain(
            state["continuous"], state["discrete"], state["grid"]
        )
        if grid is None:
            raise TNFRValueError(
                "x_grid is mandatory for BEPIElement instances.",
                context={"grid": None},
                suggestion="Provide a valid x_grid.",
            )
        object.__setattr__(self, "f_continuous", f_array)
        object.__setattr__(self, "a_discrete", a_array)
        object.__setattr__(self, "x_grid", grid)

    def __add__(self, other: BEPIElement | float | int) -> BEPIElement:
        """Add a scalar or another BEPIElement to this element."""
        if isinstance(other, (int, float)):
            # Scalar addition: broadcast to all components
            scalar = complex(other)
            return BEPIElement(
                self.f_continuous + scalar, self.a_discrete + scalar, self.x_grid
            )
        elif isinstance(other, BEPIElement):
            # Element addition: use direct_sum
            return self.direct_sum(other)
        return NotImplemented

    def __radd__(self, other: float | int) -> BEPIElement:
        """Support reversed addition (scalar + BEPIElement)."""
        return self.__add__(other)

    def __sub__(self, other: BEPIElement | float | int) -> BEPIElement:
        """Subtract a scalar or another BEPIElement from this element."""
        if isinstance(other, (int, float)):
            scalar = complex(other)
            return BEPIElement(
                self.f_continuous - scalar, self.a_discrete - scalar, self.x_grid
            )
        elif isinstance(other, BEPIElement):
            self._assert_compatible(other)
            return BEPIElement(
                self.f_continuous - other.f_continuous,
                self.a_discrete - other.a_discrete,
                self.x_grid,
            )
        return NotImplemented

    def __rsub__(self, other: float | int) -> BEPIElement:
        """Support reversed subtraction (scalar - BEPIElement)."""
        if isinstance(other, (int, float)):
            scalar = complex(other)
            return BEPIElement(
                scalar - self.f_continuous, scalar - self.a_discrete, self.x_grid
            )
        return NotImplemented

    def __mul__(self, other: float | int) -> BEPIElement:
        """Multiply this element by a scalar."""
        if isinstance(other, (int, float)):
            scalar = complex(other)
            return BEPIElement(
                self.f_continuous * scalar, self.a_discrete * scalar, self.x_grid
            )
        return NotImplemented

    def __rmul__(self, other: float | int) -> BEPIElement:
        """Support reversed multiplication (scalar * BEPIElement)."""
        return self.__mul__(other)

    def __truediv__(self, other: float | int) -> BEPIElement:
        """Divide this element by a scalar."""
        if isinstance(other, (int, float)):
            scalar = complex(other)
            if scalar == 0:
                raise ZeroDivisionError("Cannot divide BEPIElement by zero")
            return BEPIElement(
                self.f_continuous / scalar, self.a_discrete / scalar, self.x_grid
            )
        return NotImplemented

    def __eq__(self, other: object) -> bool:
        """Check equality with another BEPIElement or numeric value.

        When comparing to a numeric value, compares with the maximum magnitude.
        """
        if isinstance(other, BEPIElement):
            return (
                np.allclose(
                    self.f_continuous, other.f_continuous, rtol=1e-12, atol=1e-12
                )
                and np.allclose(
                    self.a_discrete, other.a_discrete, rtol=1e-12, atol=1e-12
                )
                and np.allclose(self.x_grid, other.x_grid, rtol=1e-12, atol=1e-12)
            )
        elif isinstance(other, (int, float)):
            # Compare with maximum magnitude for numeric comparisons
            # Use consistent tolerance with element comparisons
            return abs(self._max_magnitude() - float(other)) < 1e-12
        return NotImplemented


@dataclass(frozen=True)
class CoherenceEvaluation:
    """Container describing the outcome of a coherence transform evaluation."""

    element: BEPIElement
    transformed: BEPIElement
    coherence_before: float
    coherence_after: float
    kappa: float
    tolerance: float
    satisfied: bool
    required: float
    deficit: float
    ratio: float


def evaluate_coherence_transform(
    element: BEPIElement,
    transform: Callable[[BEPIElement], BEPIElement],
    *,
    kappa: float = 1.0,
    tolerance: float = 1e-9,
    space: "BanachSpaceEPI | None" = None,
    norm_kwargs: Mapping[str, float] | None = None,
) -> CoherenceEvaluation:
    """Apply ``transform`` to ``element`` and verify a coherence inequality.

    Parameters
    ----------
    element:
        The :class:`BEPIElement` subject to the transformation.
    transform:
        Callable receiving ``element`` and returning the transformed
        :class:`BEPIElement`.  The callable is expected to preserve the
        structural sampling grid and dimensionality of the element.
    kappa:
        Factor on the right-hand side of the inequality ``C(T(EPI)) ≥ κ·C(EPI)``.
    tolerance:
        Non-negative slack applied to the inequality.  When
        ``C(T(EPI)) + tolerance`` exceeds ``κ·C(EPI)`` the check succeeds.
    space:
        Optional :class:`~tnfr.mathematics.spaces.BanachSpaceEPI` instance used
        to compute the coherence norm.  When omitted, a local instance is
        constructed to avoid circular imports at module import time.
    norm_kwargs:
        Optional keyword arguments forwarded to
        :meth:`BanachSpaceEPI.coherence_norm`.

    Returns
    -------
    CoherenceEvaluation
        Dataclass capturing the before/after coherence values together with the
        inequality verdict.
    """

    if kappa < 0:
        raise TNFRValueError(
            "kappa must be non-negative.",
            context={"kappa": kappa},
            suggestion="Provide a non-negative kappa.",
        )
    if tolerance < 0:
        raise TNFRValueError(
            "tolerance must be non-negative.",
            context={"tolerance": tolerance},
            suggestion="Provide a non-negative tolerance.",
        )

    if norm_kwargs is None:
        norm_kwargs = {}

    from .spaces import BanachSpaceEPI  # Local import to avoid circular dependency

    working_space = space if space is not None else BanachSpaceEPI()

    coherence_before = working_space.coherence_norm(
        element.f_continuous,
        element.a_discrete,
        x_grid=element.x_grid,
        **norm_kwargs,
    )

    transformed = transform(element)
    if not isinstance(transformed, BEPIElement):
        raise TypeError("transform must return a BEPIElement instance.")

    coherence_after = working_space.coherence_norm(
        transformed.f_continuous,
        transformed.a_discrete,
        x_grid=transformed.x_grid,
        **norm_kwargs,
    )

    required = kappa * coherence_before
    satisfied = coherence_after + tolerance >= required
    deficit = max(0.0, required - coherence_after)

    if coherence_before > 0:
        ratio = coherence_after / coherence_before
    elif coherence_after > tolerance:
        ratio = float("inf")
    else:
        ratio = 1.0

    return CoherenceEvaluation(
        element=element,
        transformed=transformed,
        coherence_before=coherence_before,
        coherence_after=coherence_after,
        kappa=kappa,
        tolerance=tolerance,
        satisfied=satisfied,
        required=required,
        deficit=deficit,
        ratio=ratio,
    )