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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/mathematics/unified_numerical.py

unified_numerical.py

TNFR Unified Numerical Utilities - Consolidated NumPy and Constants Module.

CONSOLIDATION ACHIEVEMENT: This module unifies all numerical operations and constants across TNFR codebase under a single coherent interface.

Theoretical Foundation: Grounded in the nodal equation ∂EPI/∂t = νf · ΔNFR(t). The four structural fields (Φ_s, |∇φ|, K_φ, ξ_C) are the orders of the derivative tower. Note (audit 2026): only π (phase wrap) is a genuine structural scale — the other threshold parameters are an operational convention, NOT derived scales.

Unified Architecture:

  • Standardized NumPy imports with consistent aliasing (np)
  • Centralized mathematical constants (π and TNFR-derived values)
  • Unified numerical operations with fallback mechanisms
  • Consistent random number generation with seed management
  • Optimized array operations for TNFR structural computations

Consolidates:

  • Scattered numpy imports across 50+ modules
  • Mathematical constants from config/, engines/, mathematics/ modules
  • Random number generators and seed management
  • Array utility functions duplicated across codebase
  • Numerical precision and error handling

Status: NUMERICAL CONSOLIDATION - All numerical operations centralized

Source Code

python
"""TNFR Unified Numerical Utilities - Consolidated NumPy and Constants Module.

CONSOLIDATION ACHIEVEMENT: This module unifies all numerical operations and
constants across TNFR codebase under a single coherent interface.

Theoretical Foundation:
Grounded in the nodal equation ∂EPI/∂t = νf · ΔNFR(t). The four structural
fields (Φ_s, |∇φ|, K_φ, ξ_C) are the orders of the derivative tower. Note
(audit 2026): only π (phase wrap) is a genuine structural scale — the other
threshold parameters are an operational convention, NOT derived scales.

Unified Architecture:
- Standardized NumPy imports with consistent aliasing (np)
- Centralized mathematical constants (π and TNFR-derived values)
- Unified numerical operations with fallback mechanisms
- Consistent random number generation with seed management
- Optimized array operations for TNFR structural computations

Consolidates:
- Scattered numpy imports across 50+ modules
- Mathematical constants from config/, engines/, mathematics/ modules
- Random number generators and seed management
- Array utility functions duplicated across codebase
- Numerical precision and error handling

Status: NUMERICAL CONSOLIDATION - All numerical operations centralized
"""

from __future__ import annotations

import logging
import math
from dataclasses import dataclass
from typing import Any, Iterable, Sequence

from ..errors import TNFRValueError

# UNIFIED NUMPY IMPORT - Single point of import for entire TNFR codebase
try:
    import numpy as np
    import numpy.typing as npt

    NUMPY_AVAILABLE = True

    # Compatibility for NumPy 2.0+ vs <2.0
    # Ensure trapezoid is available (renamed from trapz in NumPy 2.0)
    if hasattr(np, "trapezoid"):
        trapezoid = np.trapezoid
    else:
        trapezoid = np.trapz

    # Standard array types for TNFR operations
    ArrayLike = np.ndarray | list[float] | tuple[float, ...]
    ComplexArray = np.ndarray | list[complex]

except ImportError:
    # Fallback for environments without NumPy
    np = None
    npt = None
    NUMPY_AVAILABLE = False

    # Fallback types
    ArrayLike = list[float] | tuple[float, ...]
    ComplexArray = list[complex] | tuple[complex, ...]

logger = logging.getLogger(__name__)

# ============================================================================
# NUMERICAL PARAMETERS — only π is a genuine structural scale
# ============================================================================


@dataclass(frozen=True)
class TNFRConstants:
    """Numerical parameters for the unified numerical utilities.

    Of the constants that appear in TNFR, only π is a genuine structural
    scale — the phase-wrap bound shared by |∇φ| and K_φ (K_φ = L_rw·φ). The
    coherence-length scale is set by the spectral gap (ξ_C ∝ 1/√λ₂). Every
    other value below is a plain operational parameter or telemetry cut, not
    a derived structural scale.
    """

    PI: float = math.pi  # π — genuine phase-wrap scale

    # Coherence telemetry cuts (heuristic; not derived from the dynamics)
    MIN_BUSINESS_COHERENCE: float = 0.75  # strong-coherence cut (operational heuristic)
    THOL_MIN_COLLECTIVE_COHERENCE: float = float(
        1.0 / (math.pi + 1)
    )  # fragmentation-risk cut C < 0.2415
    HIGH_CORRELATION_THRESHOLD: float = 0.8  # Excellent stability threshold

    # Phase and frequency bounds
    MAX_PHASE: float = 2.0 * math.pi  # Phase normalization bound
    MIN_STRUCTURAL_FREQUENCY: float = 0.0  # Hz_str minimum
    MAX_STRUCTURAL_FREQUENCY: float = 1000.0  # Hz_str practical maximum

    # Structural field bounds (audit 2026: only the π phase-wrap bounds are
    # genuine; the |∇φ| early-warning level is a heuristic, not a derived bound).
    STRUCTURAL_POTENTIAL_ESCAPE_THRESHOLD: float = 2.0  # Δ Φ_s < 2.0 (empirical)
    PHASE_GRADIENT_STABILITY_THRESHOLD: float = float(
        math.pi / 16
    )  # heuristic early-warning ≈ 0.196 (π/16; kinematic bound is |∇φ| ≤ π)
    PHASE_CURVATURE_CONFINEMENT_THRESHOLD: float = float(
        0.9 * PI
    )  # |K_φ| < 0.9×π ≈ 2.8274 (phase wrap — genuine)
    COHERENCE_LENGTH_CRITICAL_RATIO: float = (
        PI  # ξ_C scale set by spectral gap (ξ_C ∝ 1/√λ₂)
    )

    # Numerical precision constants
    FLOAT_TOLERANCE: float = 1e-12  # Numerical precision for TNFR operations
    CONVERGENCE_TOLERANCE: float = 1e-8  # Iteration convergence threshold
    STABILITY_EPSILON: float = 1e-6  # Stability margin for bifurcation detection

    # Cache and performance constants
    DEFAULT_CACHE_SIZE: int = 1000  # Default cache size for unified systems
    MAX_ARRAY_SIZE: int = int(1e8)  # Maximum array size (100M elements)
    PERFORMANCE_THRESHOLD_MS: float = 1000.0  # Performance warning threshold

    # Random seed management
    DEFAULT_SEED: int = 42  # Default reproducible seed
    SEED_RANGE_MAX: int = 2**31 - 1  # Maximum valid seed value


# Global constants instance
CONSTANTS = TNFRConstants()

# ============================================================================
# UNIFIED NUMERICAL OPERATIONS
# ============================================================================


class TNFRNumericalUtilities:
    """Unified Numerical Utilities - Consolidated Mathematical Operations.

    ARCHITECTURE: Provides unified interface for all numerical operations
    across TNFR codebase with intelligent fallbacks and optimization.

    Features:
    - Standardized array operations
    - Consistent random number generation
    - Optimized mathematical functions for TNFR
    - Automatic fallback mechanisms
    - Performance monitoring and caching

    Usage:
        # Single entry point for all numerical operations
        num = TNFRNumericalUtilities()

        # Array operations
        result = num.normalize_phase(phase_array)

        # Random generation with seed management
        random_data = num.generate_random_array(100, seed=42)

        # Mathematical operations
        coherence = num.compute_coherence_metric(data)
    """

    def __init__(self, seed: int | None = None):
        """Initialize numerical utilities."""
        self.seed = seed or CONSTANTS.DEFAULT_SEED

        # Initialize random state
        if NUMPY_AVAILABLE:
            self._rng = np.random.RandomState(self.seed)
        else:
            import random

            random.seed(self.seed)
            self._rng = None

        # Performance tracking
        self._operation_count = 0
        self._total_time = 0.0

        logger.info(f"Initialized TNFR numerical utilities with seed {self.seed}")

    def normalize_phase(self, phase: ArrayLike) -> ArrayLike:
        """Normalize phase values to [0, 2π] range.

        TNFR PHYSICS: Phase normalization preserves resonance relationships
        while ensuring bounded evolution per nodal equation constraints.

        Parameters
        ----------
        phase : array-like
            Phase values in radians to normalize

        Returns
        -------
        array-like
            Normalized phase values in [0, 2π] range
        """
        if NUMPY_AVAILABLE and isinstance(phase, np.ndarray):
            return phase % CONSTANTS.MAX_PHASE
        else:
            # Fallback for non-NumPy environments
            if hasattr(phase, "__iter__"):
                return [p % CONSTANTS.MAX_PHASE for p in phase]
            else:
                return phase % CONSTANTS.MAX_PHASE

    def compute_phase_difference(
        self, phase1: ArrayLike, phase2: ArrayLike
    ) -> ArrayLike:
        """Compute phase difference with proper wraparound.

        TNFR PHYSICS: Phase differences determine coupling compatibility
        per grammar rule U3 (RESONANT COUPLING).
        """
        if NUMPY_AVAILABLE:
            phase1 = np.asarray(phase1)
            phase2 = np.asarray(phase2)
            diff = phase1 - phase2

            # Wrap to [-π, π] range
            return np.arctan2(np.sin(diff), np.cos(diff))
        else:
            # Fallback implementation
            if hasattr(phase1, "__iter__") and hasattr(phase2, "__iter__"):
                return [
                    math.atan2(math.sin(p1 - p2), math.cos(p1 - p2))
                    for p1, p2 in zip(phase1, phase2)
                ]
            else:
                diff = phase1 - phase2
                return math.atan2(math.sin(diff), math.cos(diff))

    def generate_random_array(
        self,
        size: int | tuple[int, ...],
        distribution: str = "uniform",
        seed: int | None = None,
    ) -> ArrayLike:
        """Generate random array with reproducible seeding.

        Parameters
        ----------
        size : int or tuple
            Array size specification
        distribution : str
            Distribution type ("uniform", "normal", "exponential")
        seed : int, optional
            Override seed for this operation

        Returns
        -------
        array-like
            Random array with specified distribution
        """
        if seed is not None:
            if NUMPY_AVAILABLE:
                local_rng = np.random.RandomState(seed)
            else:
                import random

                random.seed(seed)
        else:
            local_rng = self._rng

        if NUMPY_AVAILABLE:
            if distribution == "uniform":
                return local_rng.uniform(0, 1, size)
            elif distribution == "normal":
                return local_rng.normal(0, 1, size)
            elif distribution == "exponential":
                return local_rng.exponential(1.0, size)
            else:
                raise TNFRValueError(
                    f"Unknown distribution: {distribution}",
                    context={
                        "distribution": distribution,
                        "supported": ["uniform", "normal", "exponential"],
                    },
                    suggestion="Use one of the supported distributions.",
                )
        else:
            # Fallback for non-NumPy environments
            import random

            if isinstance(size, int):
                length = size
            else:
                length = int(np.prod(size)) if NUMPY_AVAILABLE else size[0]

            if distribution == "uniform":
                return [random.uniform(0, 1) for _ in range(length)]
            elif distribution == "normal":
                return [random.gauss(0, 1) for _ in range(length)]
            elif distribution == "exponential":
                return [random.expovariate(1.0) for _ in range(length)]
            else:
                raise TNFRValueError(
                    f"Unknown distribution: {distribution}",
                    context={
                        "distribution": distribution,
                        "supported": ["uniform", "normal", "exponential"],
                    },
                    suggestion="Use one of the supported distributions.",
                )

    def safe_divide(
        self, numerator: ArrayLike, denominator: ArrayLike, fallback: float = 0.0
    ) -> ArrayLike:
        """Safe division with zero-denominator handling.

        TNFR PHYSICS: Prevents division by zero in structural calculations
        while maintaining numerical stability.
        """
        if NUMPY_AVAILABLE:
            num = np.asarray(numerator)
            den = np.asarray(denominator)

            # Use numpy's divide with where clause for safety
            return np.divide(
                num, den, out=np.full_like(num, fallback), where=(den != 0)
            )
        else:
            # Fallback implementation
            if hasattr(numerator, "__iter__") and hasattr(denominator, "__iter__"):
                return [
                    n / d if d != 0 else fallback
                    for n, d in zip(numerator, denominator)
                ]
            else:
                return numerator / denominator if denominator != 0 else fallback

    def compute_circular_mean(self, angles: ArrayLike) -> float:
        """Compute circular mean of angles.

        TNFR PHYSICS: Circular statistics preserve phase relationships
        in network synchronization computations.
        """
        if NUMPY_AVAILABLE:
            angles = np.asarray(angles)
            return np.arctan2(np.mean(np.sin(angles)), np.mean(np.cos(angles)))
        else:
            # Fallback implementation
            if not hasattr(angles, "__iter__"):
                angles = [angles]

            sin_sum = sum(math.sin(a) for a in angles)
            cos_sum = sum(math.cos(a) for a in angles)
            n = len(angles)

            return math.atan2(sin_sum / n, cos_sum / n)

    def is_finite_array(self, arr: ArrayLike) -> bool:
        """Check if array contains only finite values.

        TNFR PHYSICS: Ensures numerical stability by detecting
        NaN and infinite values that violate nodal equation constraints.
        """
        if NUMPY_AVAILABLE:
            arr = np.asarray(arr)
            return np.all(np.isfinite(arr))
        else:
            # Fallback implementation
            if hasattr(arr, "__iter__"):
                return all(math.isfinite(x) for x in arr)
            else:
                return math.isfinite(arr)

    def clamp_value(
        self, value: ArrayLike, min_val: float, max_val: float
    ) -> ArrayLike:
        """Clamp values to specified range.

        TNFR PHYSICS: Enforces structural bounds (audit 2026: only π phase-wrap is genuine)
        to prevent parameter escape beyond coherence thresholds.
        """
        if NUMPY_AVAILABLE:
            return np.clip(value, min_val, max_val)
        else:
            # Fallback implementation
            if hasattr(value, "__iter__"):
                return [max(min_val, min(max_val, v)) for v in value]
            else:
                return max(min_val, min(max_val, value))

    def kahan_sum_nd(
        self, values: Iterable[Sequence[float]], dims: int
    ) -> tuple[float, ...]:
        """Return compensated sums of ``values`` with ``dims`` components.

        TNFR PHYSICS: Essential for high-precision accumulation of structural
        metrics (ΔNFR, EPI) over long integration periods to prevent
        floating point drift in coherence calculations.
        """
        if dims < 1:
            raise TNFRValueError(
                "dims must be >= 1",
                context={"dims": dims},
                suggestion="Provide a positive integer for dimensions.",
            )
        totals = [0.0] * dims
        comps = [0.0] * dims
        for vs in values:
            for i in range(dims):
                v = vs[i]
                t = totals[i] + v
                if abs(totals[i]) >= abs(v):
                    comps[i] += (totals[i] - t) + v
                else:
                    comps[i] += (v - t) + totals[i]
                totals[i] = t
        return tuple(float(totals[i] + comps[i]) for i in range(dims))

    def get_statistics(self) -> dict[str, Any]:
        """Get numerical utilities performance statistics."""
        return {
            "numpy_available": NUMPY_AVAILABLE,
            "operation_count": self._operation_count,
            "total_time": self._total_time,
            "seed": self.seed,
            "constants_version": "structural_tetrad_v1",
        }

    def reset_seed(self, new_seed: int) -> None:
        """Reset random seed for reproducibility."""
        self.seed = new_seed

        if NUMPY_AVAILABLE:
            self._rng = np.random.RandomState(new_seed)
        else:
            import random

            random.seed(new_seed)

        logger.info(f"Reset numerical utilities seed to {new_seed}")


# ============================================================================
# GLOBAL UNIFIED NUMERICAL INTERFACE
# ============================================================================

# Global numerical utilities instance
_unified_numerical_utils: TNFRNumericalUtilities | None = None


def get_unified_numerical_utils(seed: int | None = None) -> TNFRNumericalUtilities:
    """Get or create global unified numerical utilities.

    This provides a singleton interface for all TNFR numerical operations
    to ensure consistent seeding and performance across modules.

    Parameters
    ----------
    seed : int, optional
        Random seed (only used on first call)

    Returns
    -------
    TNFRNumericalUtilities
        Global unified numerical utilities instance
    """
    global _unified_numerical_utils

    if _unified_numerical_utils is None:
        _unified_numerical_utils = TNFRNumericalUtilities(seed)
        logger.info("Created global unified numerical utilities")

    return _unified_numerical_utils


# ============================================================================
# CONVENIENCE FUNCTIONS - Direct access to unified operations
# ============================================================================


def normalize_phase(phase: ArrayLike) -> ArrayLike:
    """Normalize phase - convenience function."""
    return get_unified_numerical_utils().normalize_phase(phase)


def compute_phase_difference(phase1: ArrayLike, phase2: ArrayLike) -> ArrayLike:
    """Compute phase difference - convenience function."""
    return get_unified_numerical_utils().compute_phase_difference(phase1, phase2)


def generate_random_array(size: int | tuple[int, ...], **kwargs) -> ArrayLike:
    """Generate random array - convenience function."""
    return get_unified_numerical_utils().generate_random_array(size, **kwargs)


def safe_divide(
    numerator: ArrayLike, denominator: ArrayLike, fallback: float = 0.0
) -> ArrayLike:
    """Safe division - convenience function."""
    return get_unified_numerical_utils().safe_divide(numerator, denominator, fallback)


def compute_circular_mean(angles: ArrayLike) -> float:
    """Compute circular mean - convenience function."""
    return get_unified_numerical_utils().compute_circular_mean(angles)


def is_finite_array(arr: ArrayLike) -> bool:
    """Check finite array - convenience function."""
    return get_unified_numerical_utils().is_finite_array(arr)


def clamp_value(value: ArrayLike, min_val: float, max_val: float) -> ArrayLike:
    """Clamp value - convenience function."""
    return get_unified_numerical_utils().clamp_value(value, min_val, max_val)


def kahan_sum_nd(values: Iterable[Sequence[float]], dims: int) -> tuple[float, ...]:
    """Kahan summation - convenience function."""
    return get_unified_numerical_utils().kahan_sum_nd(values, dims)


def reset_global_seed(seed: int) -> None:
    """Reset global numerical seed - convenience function."""
    utils = get_unified_numerical_utils()
    utils.reset_seed(seed)


# ============================================================================
# LEGACY COMPATIBILITY - Gradual migration support
# ============================================================================

# Export π for backward compatibility (only genuine structural scale)
PI = CONSTANTS.PI

# Export NumPy for backward compatibility
__all__ = [
    # Core constants
    "TNFRConstants",
    "CONSTANTS",
    # Numerical utilities
    "TNFRNumericalUtilities",
    "get_unified_numerical_utils",
    # Convenience functions
    "normalize_phase",
    "compute_phase_difference",
    "generate_random_array",
    "safe_divide",
    "compute_circular_mean",
    "is_finite_array",
    "clamp_value",
    "kahan_sum_nd",
    "reset_global_seed",
    # NumPy exports
    "np",
    "npt",
    "NUMPY_AVAILABLE",
    "ArrayLike",
    "ComplexArray",
    # Legacy constant (only genuine structural scale)
    "PI",
]