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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/navier_stokes/conservative_face.py

conservative_face.py

TNFR-Navier-Stokes — the honest two-face reading and the blow-up frontier.

Reads a faithful NS flow (operator.TNFRNavierStokes) through the paradigm's two-face machinery, without forcing an analogy:

  • verify_diffusive_face / face_of_flow -- the linear NS operator (viscous diffusion of K_phi, nu_f <-> nu) is the over-damped (diffusive) projection of the conservative substrate wave: it calls the engine's :func:~tnfr.physics.structural_diffusion.verify_overdamped_projection with gamma = 1/nu. For every physical viscosity this is VALID -- linear NS carries no oscillatory (under-damped) content; the conservative/inertial character is entirely in the nonlinear stretching source.
  • vorticity_modal_spectrum -- the enstrophy distribution across the emergent structural modes (the torus L_rw modes are the Fourier shells), i.e. the K_phi cascade spectrum: where the nonlinear stretching pumps enstrophy.
  • measure_cascade_frontier -- the honest Clay frontier: evolve Taylor-Green at several viscosities to a matched structural time tau_str = nu*t and record how the peak enstrophy, the peak stretching production and the high-mode enstrophy fraction scale with Reynolds number.

Honest scope: this closes NOTHING. The linear diffusive face is regular by construction; the open question is whether the nonlinear K_phi cascade keeps the enstrophy bounded as nu -> 0 (Re -> inf). Measured over the accessible range, the peak grows with Re; the asymptotic is undecidable from finite resolved points. Global 3D NS regularity (Clay) stays OPEN.

Source Code

python
"""TNFR-Navier-Stokes — the honest two-face reading and the blow-up frontier.

Reads a faithful NS flow (``operator.TNFRNavierStokes``) through the paradigm's
two-face machinery, without forcing an analogy:

* ``verify_diffusive_face`` / ``face_of_flow`` -- the *linear* NS operator
  (viscous diffusion of ``K_phi``, ``nu_f <-> nu``) is the **over-damped
  (diffusive)** projection of the conservative substrate wave: it calls the
  engine's :func:`~tnfr.physics.structural_diffusion.verify_overdamped_projection`
  with ``gamma = 1/nu``.  For every physical viscosity this is VALID -- linear
  NS carries no oscillatory (under-damped) content; the conservative/inertial
  character is entirely in the nonlinear stretching source.
* ``vorticity_modal_spectrum`` -- the enstrophy distribution across the emergent
  structural modes (the torus L_rw modes are the Fourier shells), i.e. the
  ``K_phi`` cascade spectrum: where the nonlinear stretching pumps enstrophy.
* ``measure_cascade_frontier`` -- the honest Clay frontier: evolve Taylor-Green
  at several viscosities to a matched structural time ``tau_str = nu*t`` and
  record how the peak enstrophy, the peak stretching production and the
  high-mode enstrophy fraction scale with Reynolds number.

Honest scope: this closes NOTHING.  The linear diffusive face is regular by
construction; the open question is whether the *nonlinear* ``K_phi`` cascade
keeps the enstrophy bounded as ``nu -> 0`` (Re -> inf).  Measured over the
accessible range, the peak grows with Re; the asymptotic is undecidable from
finite resolved points.  Global 3D NS regularity (Clay) stays OPEN.
"""

from __future__ import annotations

import math
from dataclasses import dataclass
from typing import Any

import numpy as np

from ..metrics.common import is_structural_equilibrium, structural_coherence
from ..physics.structural_diffusion import (
    damped_wave_rates,
    verify_overdamped_projection,
)
from .operator import TNFRNavierStokes, build_torus_graph_3d

__all__ = [
    "vorticity_modal_spectrum",
    "cascade_moment_hierarchy",
    "moment_ladder_closure",
    "flow_coherence",
    "face_of_flow",
    "verify_diffusive_face",
    "measure_cascade_frontier",
    "CascadeFrontierCertificate",
]


def vorticity_modal_spectrum(
    flow: TNFRNavierStokes, n_shells: int = 12
) -> dict[str, Any]:
    r"""Enstrophy per wavenumber shell -- the ``K_phi`` cascade spectrum.

    The periodic-torus structural modes (L_rw eigenvectors) are the Fourier
    modes, and the structural eigenvalue grows monotonically with ``|k|``, so
    the enstrophy-by-shell is exactly the canonical modal-energy spectrum of the
    vorticity field.  Reports the shell spectrum plus the fraction of enstrophy
    living in the upper half of the resolved shells (the cascade indicator).
    """
    w_hat = flow._vorticity_hat(flow.u_hat)
    ens_k = 0.5 * (
        np.abs(w_hat[0]) ** 2
        + np.abs(w_hat[1]) ** 2
        + np.abs(w_hat[2]) ** 2
    )
    kmag = np.sqrt(flow.k2)
    kmax = float(np.max(kmag))
    edges = np.linspace(0.0, kmax + 1e-9, int(n_shells) + 1)
    spectrum = []
    for j in range(int(n_shells)):
        sel = (kmag >= edges[j]) & (kmag < edges[j + 1])
        spectrum.append(float(np.sum(ens_k[sel])))
    total = float(np.sum(spectrum)) or 1.0
    half = int(n_shells) // 2
    high_fraction = float(np.sum(spectrum[half:]) / total)
    return {
        "shell_edges": [float(x) for x in edges],
        "enstrophy_spectrum": spectrum,
        "high_mode_fraction": high_fraction,
        "n_shells": int(n_shells),
    }


def cascade_moment_hierarchy(flow: TNFRNavierStokes) -> dict[str, Any]:
    r"""The lambda-moment hierarchy of the cascade (the newly-unlocked read-out).

    The old diffusive reading saw only the scalar enstrophy.  The emergent modal
    basis (L_rw modes, lambda_k) gives the whole ladder of lambda-moments
    ``M_p = sum lambda_k^p E(lambda_k)``:

      * ``M_0`` = energy       ``(1/2)<|u|^2>``   -- the CONSERVATIVE-face budget
        (bounded by Leray: ``M_0(t) <= M_0(0)``);
      * ``M_1`` = enstrophy    ``(1/2)<|omega|^2>``  (the classical blow-up
        quantity);
      * ``M_2`` = palinstrophy ``(1/2)<|grad omega|^2>``  (weights the
        small-scale / high-lambda tail more).

    The blow-up question in this basis: the low moment ``M_0`` is bounded, so
    Clay is exactly whether the ladder ``M_p`` (``p >= 1``) stays uniformly
    bounded as ``nu -> 0``.  This is the NS twin of the re-founded Riemann
    coherence budget (a low moment bounded, the high-moment tail the open wall).

    Also returns the Kolmogorov resolution flag ``kmax * eta`` at the current
    state (``> 1`` means the small scales are resolved; below that the high
    moments are under-resolved lower bounds).
    """
    energy = flow.energy()
    enstrophy = flow.enstrophy()
    w_hat = flow._vorticity_hat(flow.u_hat)
    palinstrophy = 0.0
    for a in range(3):
        for kk in (flow.kx, flow.ky, flow.kz):
            g = np.fft.ifftn(1j * kk * w_hat[a]).real
            palinstrophy += float(np.mean(g**2))
    palinstrophy *= 0.5
    eps = 2.0 * flow.nu * enstrophy  # ~ energy dissipation rate
    eta = (flow.nu**3 / eps) ** 0.25 if eps > 0 else 0.0
    kmax_eta = (flow.n / 2.0) * eta
    return {
        "energy_m0": energy,
        "enstrophy_m1": enstrophy,
        "palinstrophy_m2": palinstrophy,
        "m1_over_m0": enstrophy / energy if energy else 0.0,
        "m2_over_m1": palinstrophy / enstrophy if enstrophy else 0.0,
        "kmax_eta": float(kmax_eta),
        "resolved": bool(kmax_eta > 1.0),
    }


def moment_ladder_closure(flow: TNFRNavierStokes) -> dict[str, Any]:
    r"""The `H^s` / Foias-Temam ladder rung for enstrophy, in modal language.

    The enstrophy rung is ``dM_1/dt = P - 2*nu*M_2`` with ``P`` the
    vortex-stretching production (nonlinear VAL) and ``2*nu*M_2`` the palinstrophy
    dissipation (diffusive face).  The ladder **closes** (regularity) iff ``P`` is
    dominated by the dissipation uniformly in Re.  Two exact / measured handles:

    * **interpolation saturation** ``s = M_1^2 / (M_0*M_2) in (0, 1]`` -- the exact
      Cauchy-Schwarz coupling on the modal spectrum ``E(lambda_k)``.  ``s = 1`` is a
      single-scale (concentrated) spectrum (dangerous); ``s -> 0`` a spread spectrum.
      It bounds the dissipation below: ``2*nu*M_2 >= 2*nu*M_1^2/M_0``.
    * **closure ratio** ``P / (2*nu*M_2)`` -- ``< 1`` means dissipation dominates
      (enstrophy decreasing), ``= 1`` at the enstrophy peak, ``> 1`` production wins.

    Returns the state's rung data.  Uniform-in-Re closure (the ratio staying ``< 1``
    as ``nu -> 0``) is exactly Clay -- this read-out measures it, it does not close it.
    """
    h = cascade_moment_hierarchy(flow)
    m0 = h["energy_m0"]
    m1 = h["enstrophy_m1"]
    m2 = h["palinstrophy_m2"]
    production = flow.stretching_production()
    dissipation = 2.0 * flow.nu * m2
    s = (m1 * m1) / (m0 * m2) if (m0 > 0.0 and m2 > 0.0) else 0.0
    ratio = production / dissipation if dissipation > 0.0 else float("nan")
    return {
        "interpolation_saturation": float(s),
        "production": float(production),
        "palinstrophy_dissipation": float(dissipation),
        "closure_ratio": float(ratio),
        "interpolation_ok": bool(s <= 1.0 + 1e-9),
        "dissipation_dominates": bool(ratio < 1.0),
        "kmax_eta": h["kmax_eta"],
        "resolved": h["resolved"],
    }


def flow_coherence(flow: TNFRNavierStokes) -> dict[str, Any]:
    r"""The emergent-geometry coherence attractor, read by the UNIVERSAL kernel.

    Nothing NS-specific is added: the flow is read through the **one** canonical
    coherence map :func:`~tnfr.metrics.common.structural_coherence`
    ``C = 1/(1 + |ΔNFR|)`` and the **one** fixed-point predicate
    :func:`~tnfr.metrics.common.is_structural_equilibrium` (``ΔNFR = 0``) -- the
    same emergent-geometry attractor that governs graph nodes, structural primes
    and noble gases.  Only the domain-specific ``ΔNFR`` realisation differs: here
    it is the canonical random-walk-Laplacian action on the vorticity magnitude
    field (the neighbour-mean minus self on the emergent torus geometry,
    ``ΔNFR = -L_rw·|ω|``), exactly as the graph dynamics realises it.

    The self-certification is intrinsic: the flow relaxes to its emergent-geometry
    equilibrium (``ΔNFR → 0``, ``C → 1``, ``at_equilibrium = True``) by its own
    evolution.  The uniform-closure question is then purely geometric -- does the
    coherence stay in the coherent band ``C > 1/(π+1)`` as ``Re → ∞``, or does the
    peak-turbulence coherence erode to the fragmentation floor?  This read-out
    measures it; it does not close it.
    """
    wx, wy, wz = flow.vorticity()
    mag = np.sqrt(wx**2 + wy**2 + wz**2)
    neigh = (
        np.roll(mag, 1, 0) + np.roll(mag, -1, 0)
        + np.roll(mag, 1, 1) + np.roll(mag, -1, 1)
        + np.roll(mag, 1, 2) + np.roll(mag, -1, 2)
    ) / 6.0
    dnfr = neigh - mag  # = -(L_rw . |omega|): the canonical DeltaNFR realisation
    mean_abs_dnfr = float(np.mean(np.abs(dnfr)))
    coherence = structural_coherence(mean_abs_dnfr)  # the universal kernel
    frag_floor = 1.0 / (math.pi + 1.0)
    strong_cut = math.pi / (math.pi + 1.0)
    return {
        "coherence": float(coherence),
        "mean_abs_dnfr": mean_abs_dnfr,
        "at_equilibrium": bool(
            is_structural_equilibrium(mean_abs_dnfr, 0.0, eps_dnfr=1e-2)
        ),
        "strong": bool(coherence > strong_cut),
        "coherent": bool(coherence > frag_floor),
    }


def face_of_flow(nu: float, *, n_probe: int = 4) -> dict[str, Any]:
    r"""Which face the *linear* NS operator sits on, at viscosity ``nu``.

    Maps viscosity to the damped-wave damping ``gamma = 1/nu`` (the canonical
    ``nu_f = 1/gamma`` identity) and compares ``gamma^2`` to ``4*lambda_max`` of
    the structural spectrum: ``gamma^2 > 4*lambda_max`` means every mode is
    over-damped, i.e. the linear operator is on the diffusive face.
    """
    graph = build_torus_graph_3d(int(n_probe))
    gamma = 1.0 / float(nu)
    lambdas, _s_slow, _s_fast = damped_wave_rates(graph, gamma)
    lam_max = float(np.max(lambdas)) if len(lambdas) else 0.0
    overdamped = bool(gamma * gamma > 4.0 * lam_max)
    return {
        "nu": float(nu),
        "gamma": gamma,
        "lambda_max": lam_max,
        "overdamped": overdamped,
        "face": "diffusive (over-damped)" if overdamped else "under-damped",
        "note": (
            "linear NS is diffusive; the conservative/inertial content is the "
            "nonlinear stretching source, not a linear wave"
        ),
    }


def verify_diffusive_face(nu: float, *, n_probe: int = 4, gamma: float | None = None):
    r"""Engine certificate that linear NS (``nu_f = nu``) is the over-damped
    projection of the conservative substrate wave (``gamma = 1/nu``).

    Returns the engine's
    :class:`~tnfr.physics.structural_diffusion.OverdampedProjectionCertificate`
    on a small representative torus graph (the face is an operator-level
    property of ``gamma`` vs the L_rw spectrum, resolution-independent).
    """
    graph = build_torus_graph_3d(int(n_probe))
    g = (1.0 / float(nu)) if gamma is None else float(gamma)
    return verify_overdamped_projection(graph, gamma=g)


@dataclass(frozen=True)
class CascadeFrontierCertificate:
    r"""The honest Clay frontier: nonlinear ``K_phi`` cascade vs Reynolds.

    Attributes
    ----------
    reynolds : list[float]
        ``Re = 2*pi/nu`` per run.
    peak_debt : list[float]
        Peak enstrophy over the trajectory divided by the initial enstrophy.
    peak_stretching : list[float]
        Peak vortex-stretching production (the nonlinear VAL source).
    high_mode_fraction : list[float]
        Fraction of enstrophy in the upper resolved shells at the peak.
    saturates : list[bool]
        Whether each run's enstrophy peaks and then decays (bounded debt at
        fixed Re -> the diffusive face regularises).
    tau_target : float
        Matched structural time ``tau_str = nu*t`` reached by every run.
    """

    reynolds: list[float]
    peak_debt: list[float]
    peak_stretching: list[float]
    high_mode_fraction: list[float]
    saturates: list[bool]
    tau_target: float

    @property
    def debt_grows_with_re(self) -> bool:
        """Whether the peak enstrophy debt increases across the Re sweep."""
        d = self.peak_debt
        return len(d) >= 2 and d[-1] > d[0]

    def summary(self) -> str:
        """Human-readable one-line verdict (honest: closes nothing)."""
        pairs = ", ".join(
            f"Re={r:.0f}:{d:.2f}"
            for r, d in zip(self.reynolds, self.peak_debt)
        )
        trend = "GROWS" if self.debt_grows_with_re else "flat/decays"
        allsat = "all saturate" if all(self.saturates) else "NOT all saturate"
        return (
            f"CascadeFrontier[Clay OPEN]: peak enstrophy debt {trend} with Re "
            f"({pairs}); {allsat} at fixed Re (tau_str={self.tau_target}); "
            f"asymptotic Re->inf undecidable from finite resolved points"
        )


def measure_cascade_frontier(
    *,
    n: int = 16,
    viscosities: tuple[float, ...] = (0.05, 0.02, 0.01),
    tau_target: float = 0.2,
    dt: float = 0.01,
    amplitude: float = 1.0,
    n_shells: int = 12,
) -> CascadeFrontierCertificate:
    r"""Measure how the nonlinear ``K_phi`` cascade scales with Reynolds.

    Evolves the Taylor-Green vortex at each viscosity to a matched structural
    time ``tau_str = nu*t = tau_target`` and records the peak enstrophy debt,
    the peak stretching production and the peak high-mode enstrophy fraction.
    Deterministic (no RNG).  Closes nothing; Clay stays OPEN.
    """
    reynolds: list[float] = []
    peak_debt: list[float] = []
    peak_stretch: list[float] = []
    high_frac: list[float] = []
    saturates: list[bool] = []
    for nu in viscosities:
        flow = TNFRNavierStokes(n, nu, amplitude)
        steps = max(1, int(round(tau_target / nu / dt)))
        ens0 = flow.enstrophy()
        peak_e = ens0
        peak_s = abs(flow.stretching_production())
        peak_hf = vorticity_modal_spectrum(flow, n_shells)["high_mode_fraction"]
        last_e = ens0
        for _ in range(steps):
            flow.step(dt)
            e = flow.enstrophy()
            peak_e = max(peak_e, e)
            peak_s = max(peak_s, abs(flow.stretching_production()))
            peak_hf = max(
                peak_hf,
                vorticity_modal_spectrum(flow, n_shells)["high_mode_fraction"],
            )
            last_e = e
        reynolds.append(2.0 * np.pi / nu)
        peak_debt.append(peak_e / ens0 if ens0 else 0.0)
        peak_stretch.append(peak_s)
        high_frac.append(peak_hf)
        saturates.append(bool(last_e < peak_e * 0.999))
    return CascadeFrontierCertificate(
        reynolds=reynolds,
        peak_debt=peak_debt,
        peak_stretching=peak_stretch,
        high_mode_fraction=high_frac,
        saturates=saturates,
        tau_target=float(tau_target),
    )