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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/riemann/aggregates_closure_signature.py

aggregates_closure_signature.py

Aggregates-Closure Signature — Diagnostic for B9 = Δ-aggregates-closure (§13quinquaginta-sexta).

This module implements a purely diagnostic quantity, the Aggregates-Closure Signature :math:\\mathcal{S}_{AC}, that quantifies on canonical TNFR aggregate reads whether the canonical Tier-1+Tier-2 scalar inputs (νf, EPI, φ/θ, ΔNFR) plus the canonical tetrad and currents (already discharged as closed under B7 and B8 respectively) are structurally sufficient to reconstruct each of the four canonical scalar aggregates — global coherence :math:C(t), per-node Sense Index :math:S_i, per-node energy density :math:\\mathcal{E}(i), and per-node topological charge :math:\\mathcal{Q}(i) — as a scalar-valued functional, with no hidden intermediate richer than the Tier-1/Tier-2/tetrad/currents types and no implicit measure, callable kernel, Banach-derivative apparatus, or matrix lift introduced during the aggregation step.

Methodological scope (mandatory honesty)

This module is a diagnostic only. It does not construct, promote, or modify any canonical operator. It does not advance G4 = RH. It does not by itself decide the B9 closure question (which requires the final verdict of §13quinquaginta-septima at Phase c). Phase b is n/a for B9 (B9 is a closure question, not a type-conjecture; the question is whether the existing canonical Tier-1/Tier-2/tetrad/currents types plus graph metric close the four aggregate functionals without leakage to a richer intermediate type).

The diagnostic probes two orthogonal axes:

  1. Output-scalar-closure axis — call each of :func:tnfr.metrics.common.compute_coherence, :func:tnfr.metrics.sense_index.compute_Si, :func:tnfr.physics.unified.compute_energy_density, and :func:tnfr.physics.unified.compute_topological_charge on a canonical probe graph and verify that every output value is structurally scalar-coercible (Python float / NumPy scalar / zero-dim array). compute_coherence returns a single float; the other three return dict[node, float] with explicit float coercion at the per-node aggregation step.

  2. Input-domain-closure axis — verify that the per-node inputs read by the canonical aggregate implementations are confined to the Tier-1+Tier-2 scalar slots (νf / nu_f, EPI, theta / phi, the canonical ΔNFR alias resolver tnfr.physics.canonical._get_dnfr) plus the graph metric (G.neighbors, G.degree, G.edges). No aggregate reads a per-edge tensor, per-anchor callable, per-time history kernel, or per-node non-scalar payload.

A non-zero closure signature would force the aggregates to introduce a hidden richer intermediate type on the canonical Tier-1/Tier-2/tetrad/currents-to-aggregates reduction path. A zero signature plus a unit scalar-closure fraction is the empirically expected outcome — structurally consistent with the catalog typing of the aggregates as scalar-functionals of Tier-1+Tier-2 inputs plus the graph metric (with the tetrad and currents already discharged as scalar-closed under B7 and B8 respectively).

References

  • theory/TNFR_RIEMANN_RESEARCH_NOTES.md §13quinquaginta-sexta
  • theory/CATALOG_TYPE_HYGIENE_PROGRAMME.md §3 row B9, §4 row B9
  • src/tnfr/metrics/common.py:29 (compute_coherence)
  • src/tnfr/metrics/sense_index.py:665 (compute_Si)
  • src/tnfr/physics/unified.py:136 (compute_energy_density)
  • src/tnfr/physics/unified.py:209 (compute_topological_charge)

Source Code

python
"""Aggregates-Closure Signature — Diagnostic for B9 = Δ-aggregates-closure (§13quinquaginta-sexta).

This module implements a purely diagnostic quantity, the
**Aggregates-Closure Signature** :math:`\\mathcal{S}_{AC}`, that
quantifies on canonical TNFR aggregate reads whether the canonical
Tier-1+Tier-2 scalar inputs (νf, EPI, φ/θ, ΔNFR) plus the canonical
tetrad and currents (already discharged as closed under B7 and B8
respectively) are *structurally sufficient* to reconstruct each of
the four canonical scalar aggregates — global coherence :math:`C(t)`,
per-node Sense Index :math:`S_i`, per-node energy density
:math:`\\mathcal{E}(i)`, and per-node topological charge
:math:`\\mathcal{Q}(i)` — as a scalar-valued functional, with no
hidden intermediate richer than the Tier-1/Tier-2/tetrad/currents
types and no implicit measure, callable kernel, Banach-derivative
apparatus, or matrix lift introduced during the aggregation step.

Methodological scope (mandatory honesty)
----------------------------------------
This module is a *diagnostic only*. It does **not** construct,
promote, or modify any canonical operator. It does **not** advance
G4 = RH. It does **not** by itself decide the B9 closure question
(which requires the final verdict of §13quinquaginta-septima at
Phase c). Phase b is **n/a** for B9 (B9 is a closure question, not
a type-conjecture; the question is whether the *existing* canonical
Tier-1/Tier-2/tetrad/currents types plus graph metric close the four
aggregate functionals without leakage to a richer intermediate type).

The diagnostic probes two orthogonal axes:

1. **Output-scalar-closure axis** — call each of
   :func:`tnfr.metrics.common.compute_coherence`,
   :func:`tnfr.metrics.sense_index.compute_Si`,
   :func:`tnfr.physics.unified.compute_energy_density`, and
   :func:`tnfr.physics.unified.compute_topological_charge` on a
   canonical probe graph and verify that every output value is
   structurally scalar-coercible (Python ``float`` / NumPy scalar
   / zero-dim array). ``compute_coherence`` returns a single
   ``float``; the other three return ``dict[node, float]`` with
   explicit ``float`` coercion at the per-node aggregation step.

2. **Input-domain-closure axis** — verify that the per-node inputs
   read by the canonical aggregate implementations are confined to
   the Tier-1+Tier-2 scalar slots (``νf`` / ``nu_f``, ``EPI``,
   ``theta`` / ``phi``, the canonical ``ΔNFR`` alias resolver
   ``tnfr.physics.canonical._get_dnfr``) plus the graph metric
   (``G.neighbors``, ``G.degree``, ``G.edges``). No aggregate reads
   a per-edge tensor, per-anchor callable, per-time history kernel,
   or per-node non-scalar payload.

A non-zero closure signature would *force* the aggregates to
introduce a hidden richer intermediate type on the canonical
Tier-1/Tier-2/tetrad/currents-to-aggregates reduction path. A zero
signature plus a unit scalar-closure fraction is the empirically
expected outcome — structurally consistent with the catalog typing
of the aggregates as scalar-functionals of Tier-1+Tier-2 inputs
plus the graph metric (with the tetrad and currents already
discharged as scalar-closed under B7 and B8 respectively).

References
----------
- ``theory/TNFR_RIEMANN_RESEARCH_NOTES.md`` §13quinquaginta-sexta
- ``theory/CATALOG_TYPE_HYGIENE_PROGRAMME.md`` §3 row B9, §4 row B9
- ``src/tnfr/metrics/common.py:29`` (``compute_coherence``)
- ``src/tnfr/metrics/sense_index.py:665`` (``compute_Si``)
- ``src/tnfr/physics/unified.py:136`` (``compute_energy_density``)
- ``src/tnfr/physics/unified.py:209`` (``compute_topological_charge``)
"""

from __future__ import annotations

import math
from dataclasses import dataclass, field
from typing import Any

import numpy as np

__all__ = [
    "AggregatesClosureSignatureCertificate",
    "compute_aggregates_closure_signature",
]


# Canonical per-node attribute keys read by the four aggregate
# implementations. Tier-1+Tier-2 scalar slots only (B0 = nu_f,
# B1 = EPI, B2 = phi/theta, B3 = DeltaNFR resolved via
# ``_get_dnfr``). Any non-scalar payload at any of these keys would
# constitute a structural leakage into a richer intermediate type
# along the aggregation path.
_CANONICAL_PER_NODE_KEYS: tuple[str, ...] = (
    "nu_f",
    "EPI",
    "theta",
)


def _is_scalar_payload(value: Any) -> bool:
    """Return ``True`` iff ``value`` is structurally a scalar real number."""
    if isinstance(value, bool):
        return False
    if isinstance(value, (int, float)):
        return True
    if isinstance(value, (np.integer, np.floating)):
        return True
    if isinstance(value, np.ndarray):
        if value.ndim != 0:
            return False
        try:
            float(value)
            return True
        except (TypeError, ValueError):
            return False
    return False


def _build_canonical_demo_graph(n_nodes: int, seed: int) -> Any:
    """Build a small canonical ring graph for the B9 closure probe."""
    from ..sdk import TNFR

    net = TNFR.create(int(n_nodes)).ring()
    G = net.G
    rng = np.random.default_rng(int(seed))
    for node in list(G.nodes()):
        G.nodes[node]["EPI"] = float(0.5 + 0.05 * (rng.random() - 0.5))
        G.nodes[node]["theta"] = float(2.0 * math.pi * (rng.random() - 0.5))
        current_vf = float(G.nodes[node].get("nu_f", 1.0))
        G.nodes[node]["nu_f"] = max(0.05, current_vf + 0.05 * (rng.random() - 0.5))
        G.nodes[node]["dnfr"] = float(0.1 * (rng.random() - 0.5))
    return G


def _inspect_input_scalar_closure(
    G: Any,
) -> tuple[int, int, dict[str, int]]:
    """Inspect per-node attributes the aggregate functions will read."""
    from ..physics.canonical import _get_dnfr

    n_scalar = 0
    n_total = 0
    per_key_nonscalar: dict[str, int] = {k: 0 for k in _CANONICAL_PER_NODE_KEYS}
    per_key_nonscalar["DeltaNFR"] = 0
    for node in G.nodes():
        for key in _CANONICAL_PER_NODE_KEYS:
            value = G.nodes[node].get(key)
            if value is None:
                n_scalar += 1
                n_total += 1
                continue
            n_total += 1
            if _is_scalar_payload(value):
                n_scalar += 1
            else:
                per_key_nonscalar[key] += 1
        dnfr_value = _get_dnfr(G, node)
        n_total += 1
        if _is_scalar_payload(dnfr_value):
            n_scalar += 1
        else:
            per_key_nonscalar["DeltaNFR"] += 1
    return n_scalar, n_total, per_key_nonscalar


def _inspect_output_scalar_closure(
    G: Any,
) -> tuple[int, int, dict[str, int]]:
    """Call the four aggregate functions and inspect outputs."""
    from ..metrics.common import compute_coherence
    from ..metrics.sense_index import compute_Si
    from ..physics.unified import compute_energy_density, compute_topological_charge

    n_scalar = 0
    n_total = 0
    per_field_nonscalar: dict[str, int] = {
        "C_t": 0,
        "Si": 0,
        "energy_density": 0,
        "topological_charge": 0,
    }

    # C(t): single global scalar.
    c_t = compute_coherence(G)
    n_total += 1
    if _is_scalar_payload(c_t):
        n_scalar += 1
    else:
        per_field_nonscalar["C_t"] += 1

    # Si: dict[node, float].
    si_map = compute_Si(G, inplace=False)
    if isinstance(si_map, dict):
        for _node, value in si_map.items():
            n_total += 1
            if _is_scalar_payload(value):
                n_scalar += 1
            else:
                per_field_nonscalar["Si"] += 1

    # Energy density: dict[node, float].
    e_map = compute_energy_density(G)
    for _node, value in e_map.items():
        n_total += 1
        if _is_scalar_payload(value):
            n_scalar += 1
        else:
            per_field_nonscalar["energy_density"] += 1

    # Topological charge: dict[node, float].
    q_map = compute_topological_charge(G)
    for _node, value in q_map.items():
        n_total += 1
        if _is_scalar_payload(value):
            n_scalar += 1
        else:
            per_field_nonscalar["topological_charge"] += 1

    return n_scalar, n_total, per_field_nonscalar


def _signature(n_nonscalar: int, n_total: int) -> tuple[float, float]:
    """Return ``(squashed_signature, raw_fraction)``."""
    if n_total <= 0:
        return 0.0, 0.0
    raw = float(n_nonscalar) / float(n_total)
    return float(math.tanh(raw)), raw


@dataclass(frozen=True)
class AggregatesClosureSignatureCertificate:
    """Result of the Aggregates-Closure Signature diagnostic.

    Attributes
    ----------
    signature : float
        :math:`\\mathcal{S}_{AC} \\in [0, 1]`. ``0`` means every
        aggregate-input and aggregate-output value is scalar-closed;
        ``1`` means closure fails maximally.
    input_scalar_fraction : float
        Fraction of per-node input values touched by the four
        aggregate calls that are scalar-coercible.
    output_scalar_fraction : float
        Fraction of aggregate output values that are scalar-coercible.
    n_input_reads : int
        Total number of per-node input values inspected.
    n_output_reads : int
        Total number of output values inspected (1 global + 3 ×
        n_nodes per-node).
    input_nonscalar_count : int
        Absolute number of non-scalar input values observed.
    output_nonscalar_count : int
        Absolute number of non-scalar output values observed.
    per_key_input_nonscalar : dict[str, int]
        Per-attribute-key non-scalar input count.
    per_field_output_nonscalar : dict[str, int]
        Per-aggregate-field non-scalar output count.
    n_nodes : int
        Number of nodes in the canonical probe graph.
    verdict : str
        One of ``"SCALAR_CLOSURE_ADEQUATE"``,
        ``"RICHER_INTERMEDIATE_NECESSARY"``, or ``"INDETERMINATE"``.
    diagnostics : dict
        Auxiliary fields (thresholds, seed, raw counters).
    """

    signature: float
    input_scalar_fraction: float
    output_scalar_fraction: float
    n_input_reads: int
    n_output_reads: int
    input_nonscalar_count: int
    output_nonscalar_count: int
    per_key_input_nonscalar: dict[str, int]
    per_field_output_nonscalar: dict[str, int]
    n_nodes: int
    verdict: str
    diagnostics: dict[str, Any] = field(default_factory=dict)

    def summary(self) -> str:
        per_key = ", ".join(f"{k}={v}" for k, v in self.per_key_input_nonscalar.items())
        per_field = ", ".join(
            f"{k}={v}" for k, v in self.per_field_output_nonscalar.items()
        )
        return (
            "AggregatesClosureSignatureCertificate("
            f"S_AC={self.signature:.6f}, "
            f"input_scalar_fraction={self.input_scalar_fraction:.6f}, "
            f"output_scalar_fraction={self.output_scalar_fraction:.6f}, "
            f"input_nonscalar={self.input_nonscalar_count}/"
            f"{self.n_input_reads}, "
            f"output_nonscalar={self.output_nonscalar_count}/"
            f"{self.n_output_reads}, "
            f"per_key_input_nonscalar={{{per_key}}}, "
            f"per_field_output_nonscalar={{{per_field}}}, "
            f"n_nodes={self.n_nodes}, "
            f"verdict={self.verdict})"
        )


def compute_aggregates_closure_signature(
    *,
    n_nodes: int = 24,
    seed: int = 31,
    closure_threshold: float = 0.05,
    divergent_threshold: float = 0.20,
) -> AggregatesClosureSignatureCertificate:
    """Compute the Aggregates-Closure Signature on a canonical probe graph.

    Parameters
    ----------
    n_nodes : int, default 24
        Number of nodes in the canonical probe ring graph.
    seed : int, default 31
        Deterministic seed for attribute perturbation.
    closure_threshold : float, default 0.05
        Upper threshold below which the verdict is
        ``SCALAR_CLOSURE_ADEQUATE`` (combined with unit input and
        output scalar fractions).
    divergent_threshold : float, default 0.20
        Lower threshold above which the verdict is
        ``RICHER_INTERMEDIATE_NECESSARY`` (alternative trigger:
        either fraction < 1.0).

    Returns
    -------
    AggregatesClosureSignatureCertificate
        Frozen result with the closure signature, per-axis fractions,
        per-key/field non-scalar counts, the verdict, and
        reproducibility diagnostics.

    Notes
    -----
    The signature combines two orthogonal axes (input-domain-closure
    and output-scalar-closure). The combined signature is
    :math:`\\tanh\\left(\\frac{n_{\\text{nonscalar}}^{\\text{in}}
    + n_{\\text{nonscalar}}^{\\text{out}}}{n_{\\text{total}}^{\\text{in}}
    + n_{\\text{total}}^{\\text{out}}}\\right)`. A zero signature plus
    unit fractions structurally confirm B9 = Δ-aggregates-closure at
    the Phase-a level. Phase b is **n/a**; the final verdict at Phase
    c (§13quinquaginta-septima) reduces the closure question by direct
    source-code trace of the four canonical aggregate functions at
    ``src/tnfr/metrics/common.py:29``,
    ``src/tnfr/metrics/sense_index.py:665``,
    ``src/tnfr/physics/unified.py:136``, and
    ``src/tnfr/physics/unified.py:209``.
    """
    G = _build_canonical_demo_graph(int(n_nodes), int(seed))

    n_scalar_in, n_total_in, per_key_in = _inspect_input_scalar_closure(G)
    n_scalar_out, n_total_out, per_field_out = _inspect_output_scalar_closure(G)
    n_nonscalar_in = n_total_in - n_scalar_in
    n_nonscalar_out = n_total_out - n_scalar_out
    input_scalar_fraction = (
        float(n_scalar_in) / float(n_total_in) if n_total_in else 1.0
    )
    output_scalar_fraction = (
        float(n_scalar_out) / float(n_total_out) if n_total_out else 1.0
    )
    signature, raw_fraction = _signature(
        n_nonscalar_in + n_nonscalar_out, n_total_in + n_total_out
    )
    fractions_unit = input_scalar_fraction >= 1.0 and output_scalar_fraction >= 1.0
    if signature < float(closure_threshold) and fractions_unit:
        verdict = "SCALAR_CLOSURE_ADEQUATE"
    elif signature > float(divergent_threshold) or not fractions_unit:
        verdict = "RICHER_INTERMEDIATE_NECESSARY"
    else:
        verdict = "INDETERMINATE"
    diagnostics: dict[str, Any] = {
        "closure_threshold": float(closure_threshold),
        "divergent_threshold": float(divergent_threshold),
        "seed": int(seed),
        "raw_fraction": float(raw_fraction),
    }
    return AggregatesClosureSignatureCertificate(
        signature=signature,
        input_scalar_fraction=input_scalar_fraction,
        output_scalar_fraction=output_scalar_fraction,
        n_input_reads=int(n_total_in),
        n_output_reads=int(n_total_out),
        input_nonscalar_count=int(n_nonscalar_in),
        output_nonscalar_count=int(n_nonscalar_out),
        per_key_input_nonscalar=dict(per_key_in),
        per_field_output_nonscalar=dict(per_field_out),
        n_nodes=int(n_nodes),
        verdict=verdict,
        diagnostics=diagnostics,
    )