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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/riemann/analytic_continuation.py

analytic_continuation.py

Source Code

python
r"""P13: TNFR analytic continuation of the prime-ladder von Mangoldt zeta.

The prime-ladder Dirichlet trace built in :mod:`tnfr.riemann.von_mangoldt`,

.. math::

    Z_{\mathrm{vM}}(s) \;=\; \sum_{p,k} \log(p)\, e^{-s\,k\log p}
                       \;=\; \sum_{n\ge 1} \Lambda(n)\, n^{-s}
                       \;=\; -\frac{\zeta'(s)}{\zeta(s)},
                       \qquad \mathrm{Re}(s) > 1,

converges only on the right half-plane :math:`\mathrm{Re}(s) > 1`.  Its
classical analytic continuation is the meromorphic function
:math:`-\zeta'(s)/\zeta(s)` on :math:`\mathbb{C}\setminus\{1\}\cup
\{\rho\}\cup\{-2k\}`, whose pole structure is, via the Hadamard product:

* a simple pole at :math:`s=1` with residue :math:`+1`
  (Chebyshev / Mertens dominant term),
* a simple pole at each non-trivial zero
  :math:`\rho = 1/2 + i\,t_n` of :math:`\zeta` with residue equal to
  :math:`-m_\rho` (multiplicity of :math:`\rho`),
* a simple pole at each trivial zero :math:`s=-2k`, :math:`k\ge 1`,
  with residue :math:`-1`.

TNFR interpretation
-------------------
In the TNFR prime-ladder reading of :mod:`tnfr.riemann.von_mangoldt`,
each prime :math:`p` contributes a REMESH echo ladder
:math:`\mu_{p,k} = k\log p`.  Continuing :math:`Z_{\mathrm{vM}}` to
:math:`\mathrm{Re}(s) \le 1` exposes a discrete set of
**resonance poles** which carry the entire arithmetic content:

* The :math:`s=1` pole encodes the linear envelope
  :math:`\psi(x) \sim x` (prime number theorem leading term).
* Each pole at :math:`\rho = 1/2 + it_n` acts as a coherent
  **resonant frequency** of the prime-ladder REMESH spectrum:
  the explicit formula

  .. math::

      \psi_0(x) \;=\; x \;-\; \sum_\rho \frac{x^\rho}{\rho}
                          \;-\; \log(2\pi)
                          \;-\; \tfrac{1}{2}\log\!\bigl(1 - x^{-2}\bigr)

  decomposes :math:`\psi(x) = \sum_{n\le x}\Lambda(n)` into a smooth
  Chebyshev background :math:`x` plus oscillatory contributions
  :math:`x^\rho/\rho` whose frequencies :math:`t_n` and amplitudes
  :math:`|\rho|^{-1}` are entirely determined by the resonance poles.

Honesty disclaimer
------------------
This module does **not** prove the Riemann Hypothesis.  It does not
construct a new continuation either: the continuation
:math:`-\zeta'(s)/\zeta(s)` is the unique meromorphic extension and is
implemented here via :mod:`mpmath`.  What is new is the **operational
TNFR reading**: every analytic feature of :math:`-\zeta'/\zeta` is
labelled by a structural mechanism of the prime-ladder REMESH spectrum
(Chebyshev envelope, resonance frequencies, trivial-zero curvature).

The module exposes four tools:

#. :func:`von_mangoldt_zeta_continued` — high-precision evaluation of
   the continuation for arbitrary :math:`s\in\mathbb{C}`.
#. :func:`verify_continuation_agreement` — numerical certificate that
   the prime-ladder series agrees with the continuation on a chosen
   subset of :math:`\mathrm{Re}(s) > 1`.
#. :func:`scan_critical_line_for_poles` — detects the resonance
   frequencies :math:`t_n` along :math:`\mathrm{Re}(s) = 1/2` and
   matches them against the known Riemann zeros.
#. :func:`reconstruct_psi_via_explicit_formula` — rebuilds
   :math:`\psi(x)` from a truncated sum over resonance poles to
   quantify how each new zero refines the prime-ladder envelope.

Status: EXPERIMENTAL -- Research prototype for TNFR-Riemann P13 program.

References
----------
- :mod:`tnfr.riemann.von_mangoldt` -- prime-ladder Dirichlet trace (P12).
- :mod:`tnfr.riemann.spectral_zeta` -- Mellin bridge for the graph
  spectral zeta :math:`\zeta_H` (P5).
- :mod:`tnfr.riemann.complex_extension` -- non-Hermitian
  :math:`H(s)` and ``KNOWN_RIEMANN_ZEROS`` (P4).
- theory/TNFR_RIEMANN_RESEARCH_NOTES.md sec. 9.
"""

from __future__ import annotations

from dataclasses import dataclass
from typing import Sequence

import mpmath as mp

from ..mathematics.unified_numerical import np
from .nodal_pulse import KNOWN_RIEMANN_ZEROS
from .von_mangoldt import PrimeLadderSpectrum, mangoldt_lambda, tnfr_log_zeta_derivative

__all__ = [
    # Continuation evaluator
    "von_mangoldt_zeta_continued",
    # Agreement certificate
    "ContinuationAgreement",
    "verify_continuation_agreement",
    # Pole detection on the critical line
    "CriticalLinePoleScan",
    "scan_critical_line_for_poles",
    # Explicit formula reconstruction
    "ExplicitFormulaResult",
    "reconstruct_psi_via_explicit_formula",
    # Convenience: pre-tabulated nontrivial zeros from mpmath
    "fetch_riemann_zeros",
]


# ============================================================================
# Section 1 -- High-precision continuation evaluator
# ============================================================================


def von_mangoldt_zeta_continued(
    s: complex | float,
    *,
    dps: int = 30,
) -> complex:
    r"""Evaluate :math:`-\zeta'(s)/\zeta(s)` for arbitrary :math:`s\in\mathbb{C}`.

    The classical analytic continuation of the prime-ladder Dirichlet
    trace.  Implemented via :mod:`mpmath` at ``dps`` decimal digits of
    precision and converted back to a Python ``complex``.

    Parameters
    ----------
    s : complex or float
        Spectral parameter.  May be anywhere in :math:`\mathbb{C}`
        except at the poles :math:`s=1`, :math:`s=\rho`, :math:`s=-2k`.
    dps : int, default 30
        Working decimal precision for the internal mpmath call.

    Returns
    -------
    complex
        :math:`-\zeta'(s)/\zeta(s)` evaluated at :math:`s`.

    Raises
    ------
    ValueError
        If the evaluation point is exactly at a pole detected by mpmath
        (returns ``inf`` and we surface that as an exception).
    """
    with mp.workdps(dps):
        s_mp = mp.mpc(s)
        zeta_val = mp.zeta(s_mp)
        if zeta_val == 0:
            raise ValueError(f"s={s} hits a zeta zero (pole of -zeta'/zeta)")
        zeta_deriv = mp.zeta(s_mp, derivative=1)
        result = -zeta_deriv / zeta_val
    return complex(result)


# ============================================================================
# Section 2 -- Agreement certificate on the convergent half-plane
# ============================================================================


@dataclass(frozen=True)
class ContinuationAgreement:
    r"""Numerical agreement between prime-ladder sum and continuation.

    On :math:`\mathrm{Re}(s) > 1` the prime-ladder Dirichlet trace
    :math:`Z_{TNFR}(s)` converges (geometrically in
    :math:`\log p`) to :math:`-\zeta'(s)/\zeta(s)`.  This dataclass
    records the per-point discrepancy and a global quality tag.
    """

    s_values: np.ndarray
    """Sampled spectral parameters (complex)."""

    z_prime_ladder: np.ndarray
    """Prime-ladder Dirichlet trace values."""

    z_continued: np.ndarray
    """Analytic continuation values via mpmath."""

    abs_diff: np.ndarray
    """Pointwise absolute difference."""

    rel_diff: np.ndarray
    """Pointwise relative difference (|continued|>0 assumed)."""

    max_abs_diff: float
    max_rel_diff: float

    agreement_quality: str
    """One of {'excellent', 'good', 'poor'}."""


def verify_continuation_agreement(
    spectrum: PrimeLadderSpectrum,
    s_values: Sequence[complex],
    *,
    dps: int = 30,
    excellent_threshold: float = 1e-3,
    good_threshold: float = 1e-1,
) -> ContinuationAgreement:
    r"""Verify :math:`Z_{TNFR}(s) \approx -\zeta'(s)/\zeta(s)` on :math:`\mathrm{Re}(s)>1`.

    For every sampled :math:`s` with :math:`\mathrm{Re}(s) > 1` the
    prime-ladder partial sum must approach the mpmath-evaluated
    continuation as :math:`|\mathcal{P}|, K \to \infty`.  Convergence is
    geometric in :math:`p^{-(K+1)\mathrm{Re}(s)}` per prime, so values
    of :math:`\mathrm{Re}(s)` close to :math:`1` require larger
    ``n_primes`` and ``max_power`` to reach a given tolerance.

    Parameters
    ----------
    spectrum : PrimeLadderSpectrum
        Prime-ladder built by
        :func:`tnfr.riemann.von_mangoldt.build_prime_ladder_spectrum`.
    s_values : sequence of complex
        Points to sample.  Real points with :math:`s > 1` are perfectly
        valid (passed through ``complex(...)`` internally).
    dps : int, default 30
        Mpmath working precision for the reference values.
    excellent_threshold, good_threshold : float
        Maximum allowed relative discrepancy for the ``'excellent'``
        and ``'good'`` quality tags, respectively.
    """
    s_arr = np.array([complex(s) for s in s_values])
    z_pl = np.empty(s_arr.shape, dtype=complex)
    z_co = np.empty(s_arr.shape, dtype=complex)

    for idx, s in enumerate(s_arr):
        if s.real <= 1.0:
            raise ValueError(
                "verify_continuation_agreement requires Re(s) > 1; "
                f"got s={s} with Re(s)={s.real}"
            )
        z_pl[idx] = tnfr_log_zeta_derivative(spectrum, complex(s))
        z_co[idx] = von_mangoldt_zeta_continued(complex(s), dps=dps)

    abs_diff = np.abs(z_pl - z_co)
    denom = np.maximum(np.abs(z_co), 1e-300)
    rel_diff = abs_diff / denom
    max_abs = float(abs_diff.max())
    max_rel = float(rel_diff.max())

    if max_rel <= excellent_threshold:
        quality = "excellent"
    elif max_rel <= good_threshold:
        quality = "good"
    else:
        quality = "poor"

    return ContinuationAgreement(
        s_values=s_arr,
        z_prime_ladder=z_pl,
        z_continued=z_co,
        abs_diff=abs_diff,
        rel_diff=rel_diff,
        max_abs_diff=max_abs,
        max_rel_diff=max_rel,
        agreement_quality=quality,
    )


# ============================================================================
# Section 3 -- Resonance poles along the critical line
# ============================================================================


@dataclass(frozen=True)
class CriticalLinePoleScan:
    r"""Scan of :math:`|{-\zeta'(s)/\zeta(s)}|` along :math:`s=1/2+it`.

    The continuation has a simple pole at every non-trivial
    zero :math:`\rho_n = 1/2 + i t_n` of :math:`\zeta`.  Sampling the
    magnitude :math:`|-\zeta'/\zeta|` along the critical line therefore
    produces sharp peaks at :math:`t = t_n`; the locations of those
    peaks are the TNFR-detected resonance frequencies of the
    prime-ladder spectrum.
    """

    t_values: np.ndarray
    """Imaginary parts at which we sampled :math:`s = 1/2 + i t`."""

    magnitudes: np.ndarray
    r"""Sampled :math:`|-\zeta'(s)/\zeta(s)|`."""

    detected_peaks: np.ndarray
    """Detected peak locations (``t`` values) in ascending order."""

    matched_zeros: tuple[tuple[float, float, float], ...]
    """``(t_detected, t_known, |t_detected-t_known|)`` for every
    detected peak that lies within ``match_tolerance`` of a known
    Riemann zero (defaults to the first 20 zeros from
    :data:`KNOWN_RIEMANN_ZEROS`)."""

    detection_quality: str
    """Summary tag: ``'all_matched'``, ``'partial_match'`` or
    ``'no_match'`` against the supplied reference list."""


def scan_critical_line_for_poles(
    t_min: float = 10.0,
    t_max: float = 80.0,
    n_samples: int = 4001,
    *,
    dps: int = 25,
    peak_prominence: float = 5.0,
    match_tolerance: float = 0.05,
    reference_zeros: Sequence[float] | None = None,
) -> CriticalLinePoleScan:
    r"""Detect resonance poles of :math:`-\zeta'/\zeta` on :math:`\mathrm{Re}(s)=1/2`.

    The implementation samples ``n_samples`` evenly spaced
    :math:`t \in [t_{\min}, t_{\max}]`, evaluates
    :math:`m(t) = |{-\zeta'(1/2+it)/\zeta(1/2+it)}|`
    via :func:`von_mangoldt_zeta_continued`, and selects local maxima
    above ``peak_prominence``.  Each detected peak is matched against
    ``reference_zeros`` (defaults to :data:`KNOWN_RIEMANN_ZEROS`).

    Parameters
    ----------
    t_min, t_max : float
        Inclusive range of imaginary parts to sample.  Must satisfy
        ``t_min < t_max``.
    n_samples : int
        Number of evenly spaced samples.  Resolution
        ``(t_max - t_min)/(n_samples - 1)`` must be much smaller than
        the typical spacing between Riemann zeros in the range
        (~ :math:`2\pi/\log(t/2\pi)`).
    dps : int, default 25
        Mpmath working precision.  20-30 is sufficient for the first
        :math:`\sim 100` zeros.
    peak_prominence : float, default 5.0
        Minimum height above the local floor to qualify as a peak.
        Magnitudes near zeros routinely exceed :math:`10^3`, so the
        default is comfortably above background.
    match_tolerance : float, default 0.05
        Maximum :math:`|t_{\mathrm{detected}} - t_{\mathrm{known}}|`
        to declare a match.
    reference_zeros : sequence of float, optional
        Known zero imaginary parts.  Defaults to the first 20 zeros
        from :data:`KNOWN_RIEMANN_ZEROS`.
    """
    if t_min >= t_max:
        raise ValueError("t_min must be < t_max")
    if n_samples < 11:
        raise ValueError("n_samples must be >= 11")

    if reference_zeros is None:
        reference_zeros = KNOWN_RIEMANN_ZEROS

    t_grid = np.linspace(t_min, t_max, n_samples)
    magnitudes = np.empty(n_samples)
    for i, t in enumerate(t_grid):
        try:
            value = von_mangoldt_zeta_continued(complex(0.5, float(t)), dps=dps)
            magnitudes[i] = abs(value)
        except ValueError:
            # We landed exactly on a zero -- treat as infinite peak.
            magnitudes[i] = np.inf

    # Local-maximum detection: a point i is a peak if it strictly
    # exceeds both neighbours and the prominence above the floor of
    # its surrounding window exceeds peak_prominence.
    peaks: list[float] = []
    window = max(3, n_samples // 200)
    for i in range(1, n_samples - 1):
        m_i = magnitudes[i]
        if not np.isfinite(m_i) and not np.isnan(m_i):
            # Infinite peak (exact zero hit) is unambiguously a peak.
            peaks.append(float(t_grid[i]))
            continue
        if not (m_i > magnitudes[i - 1] and m_i > magnitudes[i + 1]):
            continue
        lo = max(0, i - window)
        hi = min(n_samples, i + window + 1)
        local_floor = float(np.median(magnitudes[lo:hi]))
        if m_i - local_floor >= peak_prominence:
            peaks.append(float(t_grid[i]))

    matches: list[tuple[float, float, float]] = []
    for t_det in peaks:
        nearest_known = min(reference_zeros, key=lambda z: abs(z - t_det))
        delta = abs(t_det - nearest_known)
        if delta <= match_tolerance:
            matches.append((t_det, float(nearest_known), float(delta)))

    eligible_known = [z for z in reference_zeros if t_min <= z <= t_max]
    if matches and len(matches) >= len(eligible_known):
        quality = "all_matched"
    elif matches:
        quality = "partial_match"
    else:
        quality = "no_match"

    return CriticalLinePoleScan(
        t_values=t_grid,
        magnitudes=magnitudes,
        detected_peaks=np.asarray(peaks, dtype=float),
        matched_zeros=tuple(matches),
        detection_quality=quality,
    )


# ============================================================================
# Section 4 -- Explicit formula reconstruction of psi(x)
# ============================================================================


@dataclass(frozen=True)
class ExplicitFormulaResult:
    r"""Reconstruction of :math:`\psi(x)` via the truncated explicit formula.

    The von Mangoldt explicit formula reads (Riemann / von Mangoldt 1859):

    .. math::

        \psi_0(x) \;=\; x \;-\; \sum_{\rho} \frac{x^\rho}{\rho}
                            \;-\; \log(2\pi)
                            \;-\; \tfrac{1}{2}
                                  \log\!\bigl(1 - x^{-2}\bigr),

    where :math:`\psi_0(x) = \psi(x) - \tfrac{1}{2}\Lambda(x)` at prime
    powers and :math:`\psi(x)` elsewhere, and the sum ranges over
    every non-trivial zero (counted with multiplicity, with the
    :math:`\rho`/:math:`\bar\rho` pairing implicit).  Truncating the
    sum to ``n_zeros`` pairs gives an approximation that quantifies
    how much arithmetic information each resonance pole carries.
    """

    x_values: np.ndarray
    r"""Real arguments at which :math:`\psi(x)` was reconstructed."""

    psi_classical: np.ndarray
    r"""Direct evaluation :math:`\psi(x) = \sum_{n\le x}\Lambda(n)`."""

    psi_explicit: np.ndarray
    """Truncated explicit formula estimate."""

    abs_error: np.ndarray
    r"""Pointwise :math:`|\psi_{\mathrm{classical}} - \psi_{\mathrm{explicit}}|`."""

    rel_error: np.ndarray
    r"""Relative error (normalised by :math:`\psi_{\mathrm{classical}}`)."""

    n_zeros_used: int


def _psi_classical(x: float) -> float:
    r"""Direct evaluation of :math:`\psi(x) = \sum_{n\le x}\Lambda(n)`."""
    floor_x = int(np.floor(x))
    if floor_x < 2:
        return 0.0
    total = 0.0
    for n in range(2, floor_x + 1):
        total += mangoldt_lambda(n)
    return float(total)


def fetch_riemann_zeros(n_zeros: int, *, dps: int = 30) -> np.ndarray:
    r"""Return the first ``n_zeros`` non-trivial zeros via :func:`mpmath.zetazero`.

    Returns a complex array of shape ``(n_zeros,)`` with
    :math:`\rho_n = 1/2 + i t_n`.  Only the upper half-plane zeros are
    returned; the explicit formula sums each :math:`\rho` together with
    its conjugate :math:`\bar\rho` automatically.

    Parameters
    ----------
    n_zeros : int
        Number of zeros to fetch (in ascending :math:`t_n`).  Values of
        :math:`n_{\mathrm{zeros}}` up to a few hundred are very fast.
    dps : int, default 30
        Mpmath working precision when computing each zero.
    """
    if n_zeros < 1:
        raise ValueError("n_zeros must be >= 1")
    rho = np.empty(n_zeros, dtype=complex)
    with mp.workdps(dps):
        for n in range(1, n_zeros + 1):
            rho[n - 1] = complex(mp.zetazero(n))
    return rho


def reconstruct_psi_via_explicit_formula(
    x_values: Sequence[float],
    *,
    n_zeros: int = 50,
    include_trivial: bool = True,
    zeros: Sequence[complex] | None = None,
    dps: int = 30,
) -> ExplicitFormulaResult:
    r"""Reconstruct :math:`\psi(x)` from a truncated sum over resonance poles.

    Implementation evaluates

    .. math::

        \widetilde\psi(x; N) \;=\; x \;-\;
            \sum_{n=1}^{N}\!\bigl(\tfrac{x^{\rho_n}}{\rho_n}
                                  + \tfrac{x^{\bar\rho_n}}{\bar\rho_n}\bigr)
                       \;-\; \log(2\pi)
                       \;-\; \tfrac{1}{2}\,\log\!\bigl(1 - x^{-2}\bigr)

    and compares against the direct sum
    :math:`\psi(x) = \sum_{n\le x}\Lambda(n)`.  The error
    :math:`|\psi - \widetilde\psi|` decays as :math:`N^{-1/2}` (slowly!)
    because the explicit formula converges only conditionally, but
    every added zero visibly damps a specific oscillatory mode at
    angular frequency :math:`t_n / \log x`.

    Parameters
    ----------
    x_values : sequence of float
        Points :math:`x > 1` at which to reconstruct :math:`\psi(x)`.
    n_zeros : int, default 50
        Number of conjugate pairs of non-trivial zeros to include.
        Ignored if ``zeros`` is supplied.
    include_trivial : bool, default True
        Include the correction
        :math:`-\tfrac{1}{2}\log(1 - x^{-2})` from the trivial zeros
        at :math:`s = -2k`.
    zeros : sequence of complex, optional
        Pre-fetched non-trivial zeros (upper half-plane only).  If
        omitted, the function calls :func:`fetch_riemann_zeros`
        internally.
    dps : int, default 30
        Mpmath precision when fetching zeros internally.
    """
    x_arr = np.asarray(x_values, dtype=float)
    if (x_arr <= 1.0).any():
        raise ValueError("explicit formula requires x > 1")

    if zeros is None:
        rho = fetch_riemann_zeros(n_zeros, dps=dps)
    else:
        rho = np.asarray(zeros, dtype=complex)
        n_zeros = int(rho.size)

    psi_classical = np.array([_psi_classical(x) for x in x_arr])

    log_2pi = float(np.log(2 * np.pi))
    psi_explicit = np.empty_like(x_arr)
    for i, x in enumerate(x_arr):
        log_x = float(np.log(x))
        # Oscillatory sum: pair each zero with its conjugate.  Using
        # 2 * Re(x^rho / rho) avoids carrying complex conjugates and
        # keeps the running sum real.
        osc = 0.0
        for r in rho:
            term = (x**r) / r  # complex
            osc += 2.0 * float(term.real)
        smooth = x - log_2pi
        if include_trivial:
            smooth -= 0.5 * float(np.log(1.0 - x ** (-2.0)))
        psi_explicit[i] = smooth - osc

    abs_err = np.abs(psi_classical - psi_explicit)
    denom = np.where(psi_classical > 0, psi_classical, 1.0)
    rel_err = abs_err / denom

    return ExplicitFormulaResult(
        x_values=x_arr,
        psi_classical=psi_classical,
        psi_explicit=psi_explicit,
        abs_error=abs_err,
        rel_error=rel_err,
        n_zeros_used=n_zeros,
    )