TNFR Logo
TheoryLearnSoftwareResearch

On this page

TNFR

Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

About
  • Project history
  • Editorial policy
  • Contact
Resources
  • GitHub
  • PyPI
  • DOI · Zenodo
Legal
  • MIT License
  • Citation
© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
.pre-commit-config.yaml.semgrep.yaml.zenodo.jsonARCHITECTURE.mdbandit.yamlCHANGELOG.mdCITATION.cffCONTRIBUTING.mdEMERGENT_CANON_AUDIT.mdEMERGENT_DERIVATION_PLAN.mdLICENSE.mdMakefileMANIFEST.inpyproject.tomlpyrightconfig.jsonPYTORCH_CUDA_INTEGRATION.mdREADME.mdSECURITY.mdTESTING.mdTNFR_Website_Content_Brief.md
FILE: src/tnfr/riemann/oscillatory_correction.py

oscillatory_correction.py

Source Code

python
r"""P31 — Prime-Ladder Oscillatory Correction of Smooth Zero Targets.

Branch B1 of §13octies: structural reconstruction of the oscillatory
remainder :math:`S(T) = \pi^{-1}\arg\zeta(\tfrac12+iT)` from canonical
TNFR ingredients only.

Motivation
----------
P28 (§13sexies) and P30 (§13nonies) close the **smooth half** of
Conjecture T-HP (§13septies) at the density and operator levels
respectively.  The residual Wasserstein-1 gap
:math:`W_1(\{\widetilde\gamma_i\}, \{\gamma_n\})` observed in P30
(:math:`\approx 1.4`-:math:`1.7` for :math:`N \in \{20, 40\}`) is
exactly the **oscillatory remainder** :math:`S(T)`.

§13nonies.4 tried three multiplicative perturbations of the smooth
targets built from constants :math:`(\varphi, \gamma, \pi, e)` only.
All three yielded :math:`\approx 0\%` improvement.  The failure is
structural: :math:`S(T)` is a **prime-indexed multi-frequency** sum,
not a single canonical frequency.

This module pursues branch B1 with a **different canonical
ingredient**: the prime-ladder spectrum itself.  Concretely, the
classical Riemann-von Mangoldt formula on the critical line gives

.. math::

    \pi\,S(T) \;=\; -\sum_p\sum_{k\geq 1}
        \frac{\sin(kT\log p)}{k\,p^{k/2}}
        \;+\; \mathcal O(1/T).

Re-expressing the prime-power sum in terms of the canonical TNFR
prime-ladder spectrum :math:`\Sigma_{N,K} = \{(\mu_{p,k}, w_{p,k})\}`
with :math:`\mu_{p,k} = k\log p` and :math:`w_{p,k} = \log p` yields

.. math::

    \pi\,S_{\mathrm{TNFR}}(T;\,N,K) \;=\;
        -\sum_{(\mu,w)\in\Sigma_{N,K}}
        \frac{w}{\mu}\cdot\frac{\sin(T\mu)}{e^{\mu/2}}.

All three factors (:math:`\mu`, :math:`w`, :math:`e^{\mu/2}`) come from
the canonical P12 / P14 spectral data; :math:`\pi` is canonical (tetrad
:math:`\pi \leftrightarrow K_\varphi`).  No new operator and no
non-canonical input is used.

The position-level correction follows from
:math:`N(\gamma_n) = \overline N(\gamma_n) + S(\gamma_n) = n`:

.. math::

    \gamma_n \;\approx\; \widetilde\gamma_n
        - \frac{S_{\mathrm{TNFR}}(\widetilde\gamma_n)}
               {\overline N'(\widetilde\gamma_n)}.

What this module closes / does not close
----------------------------------------
**Closes**: the operator-level smooth half of T-HP already closed by
P30 is now complemented by an explicit canonical operator-level
candidate for the oscillatory half built from prime-ladder data.

**Does NOT close**:

* Canonicity from the nodal equation (sub-problem (2) of T-HP):
  the prime-ladder spectrum is canonical, but expressing
  :math:`S_{\mathrm{TNFR}}` as a **derivation** of the canonical
  nodal evolution (rather than as an ingredient plugged into the
  Riemann-von Mangoldt template) is still open.
* Positivity coincidence with the Weil quadratic form
  (sub-problem (3) of T-HP).
* Gap **G4 = the Riemann Hypothesis** itself.

Numerical positivity in the certificate constitutes **branch B1
evidence**: that the canonical 13-operator catalog plus the
prime-ladder spectrum suffices to reproduce :math:`S(T)`.  Numerical
negativity (no improvement) would corroborate **branch B2**: a
genuinely new canonical operator is required.
"""

from __future__ import annotations

import math
from dataclasses import dataclass

import numpy as np

from .hilbert_polya import fetch_zero_imaginary_parts, wasserstein_1_distance
from .structural_zero_density import build_structural_t_hp, smooth_zero_density
from .von_mangoldt import PrimeLadderSpectrum, build_prime_ladder_spectrum

__all__ = [
    "prime_ladder_oscillatory_sum",
    "apply_oscillatory_correction",
    "OscillatoryCorrectionCertificate",
    "compute_oscillatory_correction_certificate",
]


# ----------------------------------------------------------------------
# Core canonical reconstruction of S(T)
# ----------------------------------------------------------------------


def prime_ladder_oscillatory_sum(
    T: float | np.ndarray,
    spectrum: PrimeLadderSpectrum,
) -> float | np.ndarray:
    r"""Evaluate :math:`S_{\mathrm{TNFR}}(T;\,N,K)` from canonical data.

    Computes

    .. math::

        S_{\mathrm{TNFR}}(T) = -\frac{1}{\pi}
            \sum_{(\mu,w)\in\Sigma_{N,K}}
            \frac{w}{\mu}\cdot\frac{\sin(T\mu)}{e^{\mu/2}}

    using ONLY the prime-ladder spectrum (P12 / P14 canonical) and
    the canonical constant :math:`\pi`.

    Parameters
    ----------
    T : float or np.ndarray
        Evaluation height(s) on the critical line.
    spectrum : PrimeLadderSpectrum
        Canonical TNFR prime-ladder spectrum.

    Returns
    -------
    float or np.ndarray
        :math:`S_{\mathrm{TNFR}}(T)`, same shape as ``T``.
    """
    mu = np.asarray(spectrum.eigenvalues, dtype=float)
    w = np.asarray(spectrum.weights, dtype=float)
    if mu.size == 0:
        raise ValueError("empty prime-ladder spectrum")
    if np.any(mu <= 0.0):
        raise ValueError("prime-ladder eigenvalues must be positive")
    # Pre-compute amplitude coefficients a_j = (w_j / mu_j) * exp(-mu_j/2).
    amp = (w / mu) * np.exp(-0.5 * mu)
    T_arr = np.asarray(T, dtype=float)
    if T_arr.ndim == 0:
        s = float(np.sum(amp * np.sin(float(T_arr) * mu)))
        return -s / math.pi
    # Vectorised over T: shape (len(T), len(mu)).
    sines = np.sin(np.outer(T_arr, mu))
    s_vec = sines @ amp
    return -s_vec / math.pi


# ----------------------------------------------------------------------
# Position-level correction
# ----------------------------------------------------------------------


def apply_oscillatory_correction(
    smooth_targets: np.ndarray,
    spectrum: PrimeLadderSpectrum,
    *,
    damping: float = 1.0,
) -> np.ndarray:
    r"""Correct :math:`\{\widetilde\gamma_i\}` using the TNFR S(T).

    Applies the first-order Newton step

    .. math::

        \gamma_i^{\mathrm{corr}} = \widetilde\gamma_i
            - d\cdot\frac{S_{\mathrm{TNFR}}(\widetilde\gamma_i)}
                         {\overline N'(\widetilde\gamma_i)},

    where ``d`` is the optional damping factor (default ``1.0``).

    The smooth density :math:`\overline N'` is the canonical
    P28 density (archimedean Riemann-Siegel theta derivative);
    :math:`S_{\mathrm{TNFR}}` is the canonical prime-ladder
    reconstruction.

    Parameters
    ----------
    smooth_targets : np.ndarray
        Canonical P28 smooth targets :math:`\widetilde\gamma_i`.
    spectrum : PrimeLadderSpectrum
        Canonical prime-ladder spectrum used to evaluate
        :math:`S_{\mathrm{TNFR}}`.
    damping : float, default 1.0
        Multiplicative damping ``d``.  ``d = 0`` reproduces the smooth
        targets unchanged; ``d = 1`` is the unmoderated Newton step.

    Returns
    -------
    np.ndarray
        Corrected zero-position candidates, sorted ascending.
    """
    if damping < 0.0:
        raise ValueError("damping must be non-negative")
    targets = np.asarray(smooth_targets, dtype=float)
    if targets.ndim != 1:
        raise ValueError("smooth_targets must be 1-D")
    s_vals = np.asarray(prime_ladder_oscillatory_sum(targets, spectrum), dtype=float)
    densities = np.array([smooth_zero_density(float(t)) for t in targets], dtype=float)
    if np.any(densities <= 0.0):
        raise RuntimeError("smooth density vanished at a target; refusing to divide")
    delta = -damping * s_vals / densities
    corrected = targets + delta
    if np.any(corrected <= 0.0):
        raise RuntimeError(
            "oscillatory correction drove a target non-positive; " "reduce damping"
        )
    return np.sort(corrected)


# ----------------------------------------------------------------------
# Certificate
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class OscillatoryCorrectionCertificate:
    r"""Certificate for the P31 prime-ladder oscillatory correction.

    Attributes
    ----------
    n_targets
        Number of smooth targets / true zeros compared.
    n_primes
        Number of primes used in the prime-ladder spectrum.
    max_power
        Maximum REMESH echo index :math:`K`.
    best_damping
        Damping :math:`d` (in the swept range) minimising
        :math:`W_1(\{\gamma_i^{\mathrm{corr}}\}, \{\gamma_n\})`.
    w1_smooth_vs_true
        :math:`W_1(\{\widetilde\gamma_i\}, \{\gamma_n\})` — baseline
        (P30 smooth-half residual).
    w1_corrected_vs_true
        :math:`W_1(\{\gamma_i^{\mathrm{corr}}\}, \{\gamma_n\})` at
        ``best_damping``.
    improvement_over_smooth
        :math:`(W_1^{\mathrm{smooth}} - W_1^{\mathrm{corr}})
                / W_1^{\mathrm{smooth}}`.  Positive ⇒ the canonical
        prime-ladder reconstruction of :math:`S(T)` reduces the gap.
    max_abs_s_at_targets
        :math:`\max_i |S_{\mathrm{TNFR}}(\widetilde\gamma_i)|`,
        sanity check on the reconstruction magnitude.
    damping_sweep
        List of ``(damping, W_1)`` pairs across the sweep.
    notes
        Honest-scope reminder.  Positive improvement is **branch B1
        evidence**, not a closure of G4 = RH.
    """

    n_targets: int
    n_primes: int
    max_power: int
    best_damping: float
    w1_smooth_vs_true: float
    w1_corrected_vs_true: float
    improvement_over_smooth: float
    max_abs_s_at_targets: float
    damping_sweep: tuple[tuple[float, float], ...]
    notes: str

    def summary(self) -> str:
        lines = [
            "P31 — Prime-Ladder Oscillatory Correction Certificate",
            f"  n_targets               : {self.n_targets}",
            f"  n_primes                : {self.n_primes}",
            f"  max_power (K)           : {self.max_power}",
            f"  best damping            : {self.best_damping:.4f}",
            f"  W_1 smooth vs true      : {self.w1_smooth_vs_true:.4e}",
            f"  W_1 corrected vs true   : {self.w1_corrected_vs_true:.4e}",
            "  improvement over smooth : "
            f"{100.0 * self.improvement_over_smooth:+.2f} %",
            "  max |S_TNFR(t_i)|       : " f"{self.max_abs_s_at_targets:.4e}",
            f"  notes                   : {self.notes}",
        ]
        return "\n".join(lines)


def compute_oscillatory_correction_certificate(
    n_targets: int,
    *,
    n_primes: int = 200,
    max_power: int = 8,
    damping_grid: tuple[float, ...] = (
        0.0,
        0.25,
        0.5,
        0.75,
        1.0,
        1.25,
        1.5,
    ),
    dps: int = 30,
) -> OscillatoryCorrectionCertificate:
    r"""Run the full P31 reconstruction and emit a certificate.

    Parameters
    ----------
    n_targets : int
        Number of smooth zeros / true zeros compared.
    n_primes : int, default 200
        Primes used in the canonical prime-ladder spectrum.  Larger
        values improve the resolution of :math:`S_{\mathrm{TNFR}}`
        but are bounded above by the canonical truncation tolerance.
    max_power : int, default 8
        REMESH echo cap :math:`K`.
    damping_grid : tuple of float, default (0, .25, .5, .75, 1, 1.25, 1.5)
        Damping factors swept; best is retained.
    dps : int, default 30
        mpmath precision for the true reference zeros and for the
        smooth-target Newton solver.

    Returns
    -------
    OscillatoryCorrectionCertificate
    """
    if n_targets < 1:
        raise ValueError("n_targets must be >= 1")
    spectrum = build_prime_ladder_spectrum(n_primes, max_power=max_power)
    smooth_targets = build_structural_t_hp(n_targets, dps=dps)
    true_gammas = fetch_zero_imaginary_parts(n_targets, dps=dps)

    s_at_targets = np.asarray(
        prime_ladder_oscillatory_sum(smooth_targets, spectrum),
        dtype=float,
    )
    max_abs_s = float(np.max(np.abs(s_at_targets)))

    w1_smooth = wasserstein_1_distance(smooth_targets, true_gammas)

    sweep: list[tuple[float, float]] = []
    best_d = 0.0
    best_w1 = w1_smooth
    for d in damping_grid:
        try:
            corrected = apply_oscillatory_correction(
                smooth_targets, spectrum, damping=float(d)
            )
        except RuntimeError:
            # Correction drove a target non-positive; skip.
            sweep.append((float(d), float("inf")))
            continue
        w1_d = wasserstein_1_distance(corrected, true_gammas)
        sweep.append((float(d), w1_d))
        if w1_d < best_w1:
            best_w1 = w1_d
            best_d = float(d)

    improvement = (w1_smooth - best_w1) / w1_smooth if w1_smooth > 0 else 0.0

    notes = (
        "Honest scope: positive improvement is branch B1 evidence — "
        "the canonical prime-ladder spectrum suffices to reduce the "
        "S(T) residual.  This does NOT close G4 = RH, does NOT prove "
        "canonicity from the nodal equation (sub-problem (2)), and "
        "does NOT establish positivity coincidence with the Weil "
        "quadratic form (sub-problem (3)).  Negative improvement "
        "corroborates branch B2 (a new canonical operator required)."
    )

    return OscillatoryCorrectionCertificate(
        n_targets=int(n_targets),
        n_primes=int(spectrum.n_primes),
        max_power=int(max_power),
        best_damping=float(best_d),
        w1_smooth_vs_true=float(w1_smooth),
        w1_corrected_vs_true=float(best_w1),
        improvement_over_smooth=float(improvement),
        max_abs_s_at_targets=max_abs_s,
        damping_sweep=tuple(sweep),
        notes=notes,
    )