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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/riemann/twisted_spectral_emergence.py

twisted_spectral_emergence.py

Source Code

python
r"""TNFR-Riemann P47: chi-twisted spectral emergence under canonical coupling.

L-track analogue of P29 (:mod:`spectral_emergence`).  Sweeps three
canonical TNFR inter-prime coupling laws on the P34 chi-twisted
prime-ladder Hamiltonian and measures how far the resulting unfolded
nearest-neighbour spacing distribution lies from the GUE Wigner
surmise (the conjectural universality class of the non-trivial zeros
of :math:`L(s, \chi)`, by GUE-universality of Dirichlet L-functions
[Hughes-Rudnick 2003, Conrey-Snaith 2007]).

The chi-twist enters the coupling matrix multiplicatively through
:math:`\chi(p)\,\chi(q)`.  For primitive *real* characters
(:math:`\chi_3, \chi_4, \chi_5`) this factor lives in
:math:`\{-1, +1\}` on the P34 graph (zero values are excluded
automatically because primes dividing :math:`q` are removed from the
chi-twisted ladder), so the coupling matrix is real-symmetric and the
resulting full Hamiltonian remains Hermitian.

Motivation
----------
P34 builds the chi-twisted prime-ladder graph (excluding primes
:math:`p \mid q`) and P14 instantiates the canonical TNFR internal
Hamiltonian on it; in the decoupled limit
(``H_COUPLING_STRENGTH = 0``) the spectrum is strictly diagonal
:math:`\{k \log p : p \nmid q,\; k = 1, \ldots, K\}`.  This preserves
Euler-product orthogonality of distinct primes and yields Poissonian
level statistics.  The zeros of :math:`L(s, \chi)`, on the other hand,
are conjecturally GUE-distributed.

P47 asks: does any *canonical* chi-twisted inter-prime coupling law
:math:`J^{(\chi)}` derived from the TNFR primitives
:math:`(\varphi, \gamma, \pi, e)` and constrained by U1-U6 drive the
spacings of :math:`\mathrm{spec}(H_{P34}^{(\chi)} + J^{(\chi)})`
toward GUE?

Coupling families
-----------------
All three families mirror the P29 laws with an explicit chi-twist
factor :math:`\chi(p)\,\chi(q)`:

* ``"kuramoto_u3"``:
  :math:`J^{(\chi)}_{(p,k),(q,l)} =
      s \cdot \chi(p)\chi(q) \cdot (\gamma/\pi) \cdot
      \exp(-|k \log p - l \log q|)`.

* ``"phi_multiscale"``:
  :math:`J^{(\chi)}_{(p,k),(q,l)} =
      s \cdot \chi(p)\chi(q) \cdot \varphi^{-(k+l)} /
      \sqrt{p\,q}`.

* ``"pnt_logarithmic"``:
  :math:`J^{(\chi)}_{(p,k),(q,l)} =
      s \cdot \chi(p)\chi(q) \cdot \gamma /
      \log(1 + p\,q)`.

Honest scope (mandatory, see AGENTS.md sec. 13.2):

    * P47 is a diagnostic *only*.  It does NOT prove GRH for any
      :math:`L(s, \chi)` and does NOT close gap G4 = RH.
    * The level-statistics framework (unfolding, NN spacings, KS
      distance to GUE) is identical to P29 and reused verbatim from
      :mod:`spectral_emergence`; only the coupling construction is
      chi-twisted here.
    * Convergence of :math:`\mathrm{KS\_GUE} \to 0` under some
      canonical chi-twisted coupling would constitute structural-
      compatibility evidence for the GUE-universality of
      :math:`L(s, \chi)` zeros; absence thereof documents a concrete
      computational obstruction.

Status: EXPERIMENTAL -- Research prototype for TNFR-Riemann P47
program (chi-twisted L-track operator-level diagnostic, May 2026).
"""

from __future__ import annotations

import math
from dataclasses import dataclass, field
from typing import Sequence

import numpy as np

from .dirichlet_l import DirichletCharacter
from .spectral_emergence import (
    ks_distance_to_gue,
    ks_distance_to_poisson,
    nearest_neighbour_spacings,
    unfold_spectrum,
)
from .twisted_prime_ladder_hamiltonian import (
    TwistedPrimeLadderHamiltonian,
    build_twisted_prime_ladder_hamiltonian,
)
from .twisted_weil_explicit_formula import character_parity

__all__ = [
    "TWISTED_CANONICAL_COUPLING_LAWS",
    "TwistedInterPrimeCoupling",
    "TwistedSpectralEmergenceReport",
    "build_twisted_inter_prime_coupling",
    "couple_twisted_prime_ladder_hamiltonian",
    "twisted_sweep_coupling_strength",
    "compute_twisted_spectral_emergence_report",
]


# ----------------------------------------------------------------------
# Canonical TNFR constants (locally cached)
# ----------------------------------------------------------------------

_PHI = (1.0 + math.sqrt(5.0)) / 2.0
_GAMMA = 0.5772156649015329
_PI = math.pi

TWISTED_CANONICAL_COUPLING_LAWS: tuple[str, ...] = (
    "kuramoto_u3",
    "phi_multiscale",
    "pnt_logarithmic",
)


# ----------------------------------------------------------------------
# Coupling matrix construction (chi-twisted)
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class TwistedInterPrimeCoupling:
    """chi-twisted inter-prime UM+RA coupling matrix with metadata."""

    matrix: np.ndarray
    law: str
    strength: float
    character_modulus: int
    character_name: str
    character_parity: int
    n_primes: int
    max_power: int
    frobenius_norm: float


def _coupling_kernel(law: str, p: int, k: int, q: int, m: int) -> float:
    """Untwisted canonical kernel (chi factor applied separately).

    ``m`` plays the role of the second ladder index ``l`` in the
    docstring formulas (variable renamed to avoid E741 ``ambiguous
    variable name 'l'``).
    """
    log_p = math.log(p)
    log_q = math.log(q)
    if law == "kuramoto_u3":
        return (_GAMMA / _PI) * math.exp(-abs(k * log_p - m * log_q))
    if law == "phi_multiscale":
        return (_PHI ** (-(k + m))) / math.sqrt(p * q)
    if law == "pnt_logarithmic":
        return _GAMMA / math.log(1.0 + p * q)
    raise ValueError(
        f"Unknown coupling law '{law}'. Expected one of "
        f"{TWISTED_CANONICAL_COUPLING_LAWS}."
    )


def build_twisted_inter_prime_coupling(
    chi: DirichletCharacter,
    bundle: TwistedPrimeLadderHamiltonian,
    *,
    law: str,
    strength: float,
) -> TwistedInterPrimeCoupling:
    r"""Build canonical chi-twisted inter-prime UM+RA coupling matrix.

    Entries between nodes of *distinct* primes carry the chi-twist
    prefactor :math:`\chi(p)\,\chi(q)`.  Within-prime ladder structure
    is left to :math:`\hat H_{\mathrm{freq}}` and the REMESH ladder
    edges already present in the P34 graph.

    Parameters
    ----------
    chi : DirichletCharacter
        Character defining the twist.
    bundle : TwistedPrimeLadderHamiltonian
        P34 bundle (graph + Hamiltonian) for the same character.
    law : str
        One of :data:`TWISTED_CANONICAL_COUPLING_LAWS`.
    strength : float
        Global non-negative multiplicative prefactor.  ``strength=0``
        reproduces the decoupled P34 limit.

    Returns
    -------
    TwistedInterPrimeCoupling
        Real-symmetric matrix indexed by ``cached_node_list(bundle.graph)``
        node ordering (matches :class:`InternalHamiltonian`).
    """
    if law not in TWISTED_CANONICAL_COUPLING_LAWS:
        raise ValueError(
            f"Unknown coupling law '{law}'. Expected one of "
            f"{TWISTED_CANONICAL_COUPLING_LAWS}."
        )
    if int(bundle.character_modulus) != int(chi.modulus):
        raise ValueError(
            "Character/bundle modulus mismatch: bundle "
            f"({bundle.character_modulus}) and chi ({chi.modulus})"
        )
    if strength < 0.0:
        raise ValueError("strength must be non-negative.")

    from ..utils.cache import cached_node_list

    nodes = cached_node_list(bundle.graph)
    N = len(nodes)
    chi_at = {int(p): float(chi(int(p)).real) for p, _ in nodes}

    J = np.zeros((N, N), dtype=float)
    for i, node_i in enumerate(nodes):
        p_i, k_i = node_i
        chi_pi = chi_at[int(p_i)]
        if chi_pi == 0.0:
            continue
        for j in range(i + 1, N):
            node_j = nodes[j]
            p_j, k_j = node_j
            if p_i == p_j:
                continue
            chi_pj = chi_at[int(p_j)]
            if chi_pj == 0.0:
                continue
            val = (
                strength
                * chi_pi
                * chi_pj
                * _coupling_kernel(law, int(p_i), int(k_i), int(p_j), int(k_j))
            )
            J[i, j] = val
            J[j, i] = val

    primes = sorted({int(p) for p, _ in nodes})
    max_power = max(int(k) for _, k in nodes)
    return TwistedInterPrimeCoupling(
        matrix=J,
        law=law,
        strength=float(strength),
        character_modulus=int(chi.modulus),
        character_name=str(chi.name),
        character_parity=int(character_parity(chi)),
        n_primes=len(primes),
        max_power=max_power,
        frobenius_norm=float(np.linalg.norm(J, ord="fro")),
    )


def couple_twisted_prime_ladder_hamiltonian(
    bundle: TwistedPrimeLadderHamiltonian,
    coupling: TwistedInterPrimeCoupling,
) -> np.ndarray:
    """Add chi-twisted inter-prime coupling to P34 and return full H."""
    H_full = bundle.hamiltonian.H_int + coupling.matrix.astype(complex)
    deviation = float(np.max(np.abs(H_full - H_full.conj().T)))
    if deviation > 1e-10:
        raise RuntimeError(
            "Coupled chi-twisted Hamiltonian failed Hermiticity check: "
            f"{deviation:.2e}"
        )
    return H_full


# ----------------------------------------------------------------------
# Sweep and report
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class TwistedSpectralEmergenceReport:
    """Result of a chi-twisted coupling-strength sweep for one law."""

    character_modulus: int
    character_name: str
    character_parity: int
    law: str
    n_primes: int
    max_power: int
    strengths: np.ndarray
    ks_to_gue: np.ndarray
    ks_to_poisson: np.ndarray
    mean_spacing_sq: np.ndarray
    coupling_frobenius: np.ndarray
    eigenvalue_range: np.ndarray  # shape (S, 2) — (min, max) per strength
    best_strength_gue: float
    best_ks_to_gue: float
    poisson_baseline_ks_gue: float
    notes: tuple[str, ...] = field(default_factory=tuple)


def twisted_sweep_coupling_strength(
    chi: DirichletCharacter,
    *,
    n_primes: int,
    max_power: int,
    law: str,
    strengths: Sequence[float],
) -> TwistedSpectralEmergenceReport:
    """Sweep one canonical chi-twisted law's strength; measure KS to GUE.

    Parameters
    ----------
    chi : DirichletCharacter
        Character defining the twist.
    n_primes : int
        Number of primes requested (primes dividing the modulus are
        excluded from the spectrum by P34).
    max_power : int
        REMESH echo cap.
    law : str
        Canonical law name (see
        :data:`TWISTED_CANONICAL_COUPLING_LAWS`).
    strengths : sequence of float
        Iterable of non-negative strengths.  Should include 0.0 to
        obtain the decoupled-P34 baseline.

    Returns
    -------
    TwistedSpectralEmergenceReport
    """
    strengths_arr = np.asarray(list(strengths), dtype=float)
    if np.any(strengths_arr < 0.0):
        raise ValueError("All strengths must be non-negative.")

    bundle = build_twisted_prime_ladder_hamiltonian(
        chi,
        n_primes=n_primes,
        max_power=max_power,
        coupling=0.0,
    )

    S = strengths_arr.size
    ks_gue = np.empty(S, dtype=float)
    ks_poi = np.empty(S, dtype=float)
    mean_s2 = np.empty(S, dtype=float)
    frob = np.empty(S, dtype=float)
    eig_range = np.empty((S, 2), dtype=float)

    for idx, s in enumerate(strengths_arr):
        coupling = build_twisted_inter_prime_coupling(
            chi, bundle, law=law, strength=float(s)
        )
        H = couple_twisted_prime_ladder_hamiltonian(bundle, coupling)
        eigvals = np.linalg.eigvalsh(H)
        unfolded = unfold_spectrum(eigvals.real)
        spacings = nearest_neighbour_spacings(unfolded)
        ks_gue[idx] = ks_distance_to_gue(spacings)
        ks_poi[idx] = ks_distance_to_poisson(spacings)
        mean_s2[idx] = float(np.mean(spacings**2))
        frob[idx] = coupling.frobenius_norm
        eig_range[idx, 0] = float(eigvals.real.min())
        eig_range[idx, 1] = float(eigvals.real.max())

    best_idx = int(np.argmin(ks_gue))
    baseline_idx = int(np.argmin(strengths_arr))

    notes = (
        f"chi={chi.name} (q={chi.modulus}, " f"a={int(character_parity(chi))})",
        f"baseline (strength={strengths_arr[baseline_idx]:.3g}) "
        f"KS_GUE = {ks_gue[baseline_idx]:.4f}",
        f"best   (strength={strengths_arr[best_idx]:.3g}) "
        f"KS_GUE = {ks_gue[best_idx]:.4f}",
        "Honest scope: KS_GUE -> 0 across canonical chi-twisted laws "
        "would constitute structural-compatibility evidence; does NOT "
        "prove GRH for L(s, chi) and does NOT close gap G4 = RH.",
    )

    return TwistedSpectralEmergenceReport(
        character_modulus=int(chi.modulus),
        character_name=str(chi.name),
        character_parity=int(character_parity(chi)),
        law=law,
        n_primes=int(bundle.spectrum.eigenvalues.size // max_power),
        max_power=max_power,
        strengths=strengths_arr,
        ks_to_gue=ks_gue,
        ks_to_poisson=ks_poi,
        mean_spacing_sq=mean_s2,
        coupling_frobenius=frob,
        eigenvalue_range=eig_range,
        best_strength_gue=float(strengths_arr[best_idx]),
        best_ks_to_gue=float(ks_gue[best_idx]),
        poisson_baseline_ks_gue=float(ks_gue[baseline_idx]),
        notes=notes,
    )


def compute_twisted_spectral_emergence_report(
    chi: DirichletCharacter,
    *,
    n_primes: int = 25,
    max_power: int = 4,
    laws: Sequence[str] = TWISTED_CANONICAL_COUPLING_LAWS,
    strengths: Sequence[float] = (
        0.0,
        0.05,
        0.1,
        0.2,
        0.5,
        1.0,
        2.0,
        5.0,
    ),
) -> dict[str, TwistedSpectralEmergenceReport]:
    """Sweep every canonical chi-twisted law for ``chi`` and return reports.

    Default grid is moderate (~80x80 Hamiltonian after P34 excludes
    primes dividing q) so the experiment runs in seconds.  Scale up
    ``n_primes`` and ``max_power`` for higher-resolution exploration.
    """
    return {
        law: twisted_sweep_coupling_strength(
            chi,
            n_primes=n_primes,
            max_power=max_power,
            law=law,
            strengths=strengths,
        )
        for law in laws
    }