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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/riemann/twisted_weil_explicit_formula.py

twisted_weil_explicit_formula.py

Source Code

python
r"""TNFR-Riemann P35 — Weil/Guinand explicit formula for Dirichlet L-functions.

This module is the structural analogue of P15
(:mod:`tnfr.riemann.weil_explicit_formula`) for general primitive
Dirichlet L-functions :math:`L(s, \chi)`.  It verifies the classical
Weil-Guinand explicit formula linking the non-trivial zeros of
:math:`L(s, \chi)` to the χ-twisted prime-power spectral side computed
from the canonical TNFR P34 χ-twisted prime-ladder Hamiltonian
(:mod:`tnfr.riemann.twisted_prime_ladder_hamiltonian`).

Mathematical statement (primitive real non-principal χ mod q, parity a)
-----------------------------------------------------------------------

Let ``h`` be a real even Schwartz function on the real line with Fourier
transform

.. math::

    g(u) \;=\; \frac{1}{2\pi}\int_{-\infty}^{\infty} h(t)\,e^{-itu}\,dt.

For a primitive non-principal Dirichlet character ``\chi`` of modulus
``q`` and parity ``a = (1 - \chi(-1))/2 \in \{0, 1\}``, the
Weil-Guinand explicit formula reads

.. math::

    \sum_{\gamma} h(\gamma)
       \;=\;
       g(0)\,\log(q/\pi)
       \;+\; \frac{1}{2\pi}\!\int_{-\infty}^{\infty}\!\!
            h(t)\,\operatorname{Re}\psi\!\Bigl(\tfrac14 + \tfrac{a}{2}
                                              + \tfrac{it}{2}\Bigr) dt
       \;-\; 2\,\operatorname{Re}\!\sum_{n\ge 1}
            \frac{\chi(n)\,\Lambda(n)}{\sqrt{n}}\, g(\log n),

where ``\gamma`` runs over imaginary parts of all non-trivial zeros
``\rho = 1/2 + i\gamma`` of ``L(s, \chi)``.

Compared to the ζ analogue (P15) two structural differences appear:

* The **pole side** ``h(i/2) + h(-i/2)`` is **absent** because
  ``L(s, \chi)`` is entire for non-principal ``\chi``.
* The conductor ``q`` enters the archimedean **constant term** as
  ``g(0)\,\log(q/\pi)`` (the ζ formula has ``q = 1``, giving
  ``g(0)\log(1/\pi) = -g(0)\log\pi`` — i.e. ``log_pi`` in P15).
* The digamma argument is shifted by ``a/2`` so that the gamma
  factor of the completed L-function,
  ``\Gamma((s + a)/2)``, is reproduced correctly.

For **real** characters ``\chi`` (Legendre / Kronecker symbols) the
non-trivial zeros come in conjugate pairs ``\rho = 1/2 \pm i\gamma``,
so the zero side reduces to ``2 \sum_{\gamma > 0} h(\gamma)``.

Connection to TNFR P34
----------------------

The χ-twisted prime-power side is **exactly** a spectral functional on
the P34 Hamiltonian ``H = \operatorname{diag}(k\log p)`` with χ-twisted
complex weight operator ``W^{(\chi)} = \operatorname{diag}(\chi(p)^k \log p)``:

.. math::

    -2\,\operatorname{Re}\!\sum_{n\ge 1}
        \frac{\chi(n)\,\Lambda(n)}{\sqrt{n}}\, g(\log n)
    \;=\;
    -2\,\operatorname{Re}\,
        \operatorname{Tr}\!\bigl(\hat W^{(\chi)}
            e^{-\hat H / 2}\, g(\hat H)\bigr).

Indeed, ``n = p^k`` (with ``p \nmid q``) gives ``\chi(n) = \chi(p)^k``,
``\Lambda(n) = \log p``, ``\sqrt{n} = e^{(k\log p)/2}`` and
``g(\log n) = g(k\log p)``.  Each eigenvalue ``E_{p,k} = k\log p`` of
the P34 Hamiltonian is a node ``|p, k\rangle`` carrying complex weight
``\chi(p)^k \log p``.  This is the canonical TNFR realisation of the
prime side of Weil's formula for ``L(s, \chi)``.

Zero side
---------

Because mpmath has no direct ``dirichlet_l_zero`` analogue of
``zetazero``, the zeros of ``L(s, \chi)`` on the critical line are
located by **Hardy-Z bisection**:

.. math::

    Z_\chi(t) \;=\; e^{i\theta(t)}\,L(1/2 + it, \chi),
    \qquad
    \theta(t) = \operatorname{Im}\!\Bigl[\tfrac{it}{2}\log(q/\pi)
                + \log\Gamma\bigl(\tfrac14 + \tfrac{a}{2}
                                 + \tfrac{it}{2}\bigr)\Bigr].

For primitive real ``\chi``, ``Z_\chi`` is **real**-valued on the
critical line and its zeros coincide with the zeros of ``L(s, \chi)``
at ``s = 1/2 + it``.  A sign-change scan followed by bracket
bisection enumerates all zeros in a prescribed window
``t \in (0, t_{\max}]`` to arbitrary precision.

What this module proves and what it does not
--------------------------------------------

The Weil-Guinand explicit formula for ``L(s, \chi)`` is a *theorem*
of analytic number theory (Weil 1952), independent of RH and GRH.
What is **new** here is purely instrumental: every term of this
identity is computed **inside the canonical TNFR formalism** —
the prime side from the P34 Hamiltonian, the zero side from L-zeros
located on the critical line via Hardy-Z bisection on top of the
P33 continuation infrastructure
(:mod:`tnfr.riemann.analytic_continuation_dirichlet`).

This closes gap **G3$_\chi$** of the TNFR-Riemann programme for every
primitive Dirichlet L-function in the operational sense — there is a
canonical TNFR realisation of both sides of Weil's bridge.

This module does **not** establish gap G4 (``=`` RH) or its
generalisation **GRH**.  The zero locations are taken **as input** via
their numerical values on the critical line; their localisation on
``\operatorname{Re}(s) = 1/2`` is not derived here.  The identity itself
holds whatever the location of the zeros.

This module currently supports primitive **real** characters
(Legendre / Kronecker symbols).  Complex characters require an
extension to handle conjugate-pair zero enumeration and are left
as future work.
"""

from __future__ import annotations

import math
from dataclasses import dataclass

import mpmath
from mpmath import mp
from scipy import integrate

from ..mathematics.unified_numerical import np
from .dirichlet_l import DirichletCharacter
from .twisted_prime_ladder_hamiltonian import TwistedPrimeLadderHamiltonian
from .weil_explicit_formula import GaussianTestFunction, gaussian_test_function

__all__ = [
    "character_parity",
    "twisted_weil_constant_term",
    "twisted_weil_archimedean_integral",
    "twisted_weil_prime_side_from_hamiltonian",
    "find_dirichlet_l_zeros",
    "twisted_weil_zero_side",
    "TwistedWeilExplicitFormulaCertificate",
    "verify_twisted_weil_explicit_formula",
]


# ----------------------------------------------------------------------
# Character parity
# ----------------------------------------------------------------------


def character_parity(chi: DirichletCharacter) -> int:
    r"""Return ``a = (1 - \chi(-1))/2 \in \{0, 1\}``.

    ``a = 0`` if ``\chi`` is *even* (``\chi(-1) = +1``), ``a = 1`` if
    ``\chi`` is *odd* (``\chi(-1) = -1``).  Raises :class:`ValueError`
    if ``\chi(-1)`` is not ``\pm 1`` (which would mean ``\chi`` is not
    a primitive real character).
    """
    q = chi.modulus
    val = chi.values[(-1) % q]
    if abs(val.imag) > 1e-9:
        raise ValueError(
            f"Character {chi.name} is not real-valued at -1 " f"(chi(-1) = {val})."
        )
    re = float(val.real)
    if re > 0.5:
        return 0
    if re < -0.5:
        return 1
    raise ValueError(f"chi(-1) = {val} is not +/-1; chi may not be primitive.")


# ----------------------------------------------------------------------
# Archimedean and constant terms
# ----------------------------------------------------------------------


def twisted_weil_constant_term(
    chi: DirichletCharacter, test: GaussianTestFunction
) -> float:
    r"""Return the archimedean constant term ``g(0) \log(q/\pi)``.

    For ``q = 1`` this reduces to ``-g(0)\log\pi`` — i.e. the
    ``log_pi`` term used in the ζ formula (P15).
    """
    q = chi.modulus
    return test.g_zero() * math.log(q / math.pi)


def _digamma_real_part_with_shift(t: float, a: int) -> float:
    r"""Return ``\operatorname{Re}\psi(1/4 + a/2 + it/2)``."""
    val = mpmath.digamma(mpmath.mpc(0.25 + 0.5 * a, t / 2.0))
    return float(val.real)


def twisted_weil_archimedean_integral(
    chi: DirichletCharacter,
    test: GaussianTestFunction,
    *,
    integration_limit: float | None = None,
    quad_kwargs: dict | None = None,
) -> float:
    r"""Compute the archimedean digamma integral for ``L(s, \chi)``.

    Returns

    .. math::

        \frac{1}{2\pi}\int_{-\infty}^{\infty}
            h(t)\,\operatorname{Re}\psi\!\Bigl(\tfrac14 + \tfrac{a}{2}
                                              + \tfrac{it}{2}\Bigr)\,dt,

    with the parity-dependent shift ``a/2`` (``a = 0`` for even ``\chi``,
    ``a = 1`` for odd ``\chi``).  The integral is evaluated by
    :func:`scipy.integrate.quad` after truncating the domain to
    ``[-L, L]`` with ``L = 10\sigma`` so the Gaussian envelope is
    negligible at the cut.
    """
    a = character_parity(chi)
    if integration_limit is None:
        integration_limit = 10.0 * test.sigma
    kw = {"limit": 200, "epsabs": 1e-14, "epsrel": 1e-12}
    if quad_kwargs:
        kw.update(quad_kwargs)

    def integrand(t: float) -> float:
        return test.h(t) * _digamma_real_part_with_shift(t, a)

    val, _err = integrate.quad(integrand, -integration_limit, integration_limit, **kw)
    return float(val / (2.0 * math.pi))


# ----------------------------------------------------------------------
# Prime side from P34
# ----------------------------------------------------------------------


def twisted_weil_prime_side_from_hamiltonian(
    bundle: TwistedPrimeLadderHamiltonian,
    test: GaussianTestFunction,
) -> float:
    r"""Compute the χ-twisted prime side of Weil's formula from P34.

    Returns

    .. math::

        -2\,\operatorname{Re}\,
            \operatorname{Tr}\!\bigl(\hat W^{(\chi)} e^{-\hat H/2}
                                    g(\hat H)\bigr)
        \;=\;
        -2\!\sum_{(p,k):\,p\nmid q}
            \operatorname{Re}[\chi(p)^k]\,\log(p)\,p^{-k/2}\,g(k\log p),

    using the eigendecomposition of the P34 Hamiltonian carried by
    ``bundle.hamiltonian``.  At ``J_0 = 0`` (the canonical default of
    P34) the Hamiltonian is diagonal in the node basis and the trace
    collapses to a weighted sum over nodes ``(p, k)``.

    For real characters the imaginary part of every node weight
    vanishes; for complex characters only the real part of the trace
    contributes to the explicit formula.
    """
    eigvals, eigvecs = bundle.hamiltonian.get_spectrum()
    eigvals_real = np.real(eigvals)
    g_values = np.array([test.g(float(e)) for e in eigvals_real], dtype=float)
    half_decay = np.exp(-eigvals_real / 2.0)
    # W^(chi) is diagonal complex in the node basis
    weights_diag = np.diag(bundle.weight_operator)
    # Transform to eigenbasis: <e_i|W|e_i> = sum_n |<n|e_i>|^2 * W_nn
    W_diag_eig = np.einsum(
        "ni,n,ni->i",
        np.conj(eigvecs),
        weights_diag,
        eigvecs,
    )
    contributions = np.real(W_diag_eig * half_decay * g_values)
    return float(-2.0 * np.sum(contributions))


# ----------------------------------------------------------------------
# Zero side: Hardy-Z bisection on the critical line
# ----------------------------------------------------------------------


def _chi_to_mpmath_list(chi: DirichletCharacter) -> list:
    """Convert a DirichletCharacter to mp.dirichlet's list form."""
    out: list = []
    for v in chi.values:
        if abs(v.imag) < 1e-15:
            out.append(mp.mpf(v.real))
        else:
            out.append(mp.mpc(v.real, v.imag))
    return out


def _hardy_z_chi(t, chi_list, q, a):
    r"""Evaluate the real-valued Hardy ``Z_\chi(t)``.

    .. math::

        Z_\chi(t) \;=\; e^{i\theta(t)}\, L(1/2 + it, \chi),
        \quad
        \theta(t) = \operatorname{Im}\!\bigl[\tfrac{it}{2}\log(q/\pi)
            + \log\Gamma(\tfrac14 + \tfrac{a}{2} + \tfrac{it}{2})\bigr].

    For primitive real ``\chi`` this is real-valued and its zeros
    coincide with the zeros of ``L(s, \chi)`` on the critical line.
    The input ``t`` is an ``mp.mpf``; the result is a Python ``float``.
    """
    gamma_arg = mp.mpc(mp.mpf(1) / 4 + mp.mpf(a) / 2, t / 2)
    log_phase = mp.mpc(0, t / 2) * mp.log(mp.mpf(q) / mp.pi) + mp.loggamma(gamma_arg)
    theta = log_phase.imag
    phase = mp.exp(mp.mpc(0, theta))
    L_val = mp.dirichlet(mp.mpc(mp.mpf("0.5"), t), chi_list)
    return float((phase * L_val).real)


def find_dirichlet_l_zeros(
    chi: DirichletCharacter,
    *,
    t_max: float,
    t_min: float = 0.5,
    initial_step: float = 0.25,
    dps: int = 30,
    bisection_tol: float = 1e-12,
) -> list[float]:
    r"""Locate positive-axis zeros of ``L(s, \chi)`` on the critical line.

    Implementation: Hardy-Z bisection on the real-valued function
    ``Z_\chi(t)`` (see :func:`_hardy_z_chi`).  The function is scanned
    for sign changes on a uniform grid of step ``initial_step`` over
    ``t \in [t_{\min}, t_{\max}]``, then each sign change is refined
    by bracket bisection to ``bisection_tol``.

    For primitive real ``\chi`` all complex zeros are expected (by
    GRH) to lie on ``\operatorname{Re}(s) = 1/2``, so this enumerates
    the full set on the positive axis within the search window.

    Parameters
    ----------
    chi : DirichletCharacter
        Primitive real character.
    t_max : float
        Upper bound of zero search (must be > ``t_min``).
    t_min : float, default 0.5
        Lower bound (must be > 0; ``L(s, \chi)`` has no zero at
        ``s = 1/2``, and ``\theta(0)`` is finite, so a tiny offset
        keeps the bisection clean).
    initial_step : float, default 0.25
        Step for the sign-change scan.  Should be much smaller than
        the typical zero spacing.
    dps : int, default 30
        Mpmath working decimal precision.
    bisection_tol : float, default 1e-12
        Stop bisection when the bracket width is below this tolerance.

    Returns
    -------
    list[float]
        Ascending list of zero locations ``\gamma_n > 0`` in
        ``(t_{\min}, t_{\max})``.
    """
    if t_min <= 0:
        raise ValueError("t_min must be > 0")
    if t_max <= t_min:
        raise ValueError("t_max must be > t_min")
    if initial_step <= 0:
        raise ValueError("initial_step must be > 0")

    chi_list = _chi_to_mpmath_list(chi)
    q = int(chi.modulus)
    a = character_parity(chi)

    zeros: list[float] = []
    with mp.workdps(dps):
        n_steps = max(2, int(math.ceil((t_max - t_min) / initial_step)))
        ts = [
            mp.mpf(t_min) + i * (mp.mpf(t_max) - mp.mpf(t_min)) / n_steps
            for i in range(n_steps + 1)
        ]
        prev_t = ts[0]
        prev_z = _hardy_z_chi(prev_t, chi_list, q, a)
        for t in ts[1:]:
            z = _hardy_z_chi(t, chi_list, q, a)
            if prev_z == 0.0:
                zeros.append(float(prev_t))
            elif prev_z * z < 0:
                lo, hi = prev_t, t
                f_lo = prev_z
                while hi - lo > bisection_tol:
                    mid = (lo + hi) / 2
                    f_mid = _hardy_z_chi(mid, chi_list, q, a)
                    if f_mid == 0.0:
                        lo = hi = mid
                        break
                    if f_lo * f_mid < 0:
                        hi = mid
                    else:
                        lo, f_lo = mid, f_mid
                zeros.append(float((lo + hi) / 2))
            prev_t, prev_z = t, z

    return zeros


def twisted_weil_zero_side(
    chi: DirichletCharacter,
    test: GaussianTestFunction,
    *,
    t_max: float | None = None,
    t_min: float = 0.5,
    initial_step: float = 0.25,
    dps: int = 30,
) -> tuple[float, int, list[float]]:
    r"""Return ``\sum_\gamma h(\gamma)`` over zeros of ``L(s, \chi)``.

    For primitive **real** ``\chi`` the complex zeros come in conjugate
    pairs ``\rho = 1/2 \pm i\gamma``, so the sum equals
    ``2 \sum_{\gamma > 0} h(\gamma)`` and only the positive-axis zeros
    need to be enumerated.

    Parameters
    ----------
    chi : DirichletCharacter
        Primitive real character.
    test : GaussianTestFunction
        Test function (Gaussian envelope of width ``\sigma``).
    t_max : float, optional
        Upper bound for the zero search.  Defaults to
        ``12 * test.sigma`` so the Gaussian tail at ``t = t_{\max}``
        is below ``\exp(-72) \approx 5 \times 10^{-32}``.
    t_min : float, default 0.5
    initial_step : float, default 0.25
    dps : int, default 30

    Returns
    -------
    total : float
        ``2 \sum_{\gamma > 0} h(\gamma)`` (the full zero side).
    n_zeros_used : int
        Number of positive-axis zeros included.
    zeros : list[float]
        Ascending list of ``\gamma`` values.
    """
    if t_max is None:
        t_max = 12.0 * test.sigma
    zeros = find_dirichlet_l_zeros(
        chi,
        t_min=t_min,
        t_max=t_max,
        initial_step=initial_step,
        dps=dps,
    )
    total = 2.0 * sum(test.h(g) for g in zeros)
    return float(total), len(zeros), zeros


# ----------------------------------------------------------------------
# Certificate and high-level verification driver
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class TwistedWeilExplicitFormulaCertificate:
    """Outcome of :func:`verify_twisted_weil_explicit_formula`."""

    character_name: str
    character_modulus: int
    character_parity: int
    sigma: float
    n_zeros_used: int
    zeros: tuple[float, ...]
    zero_side: float
    constant_term: float
    archimedean_side: float
    prime_side: float
    rhs_total: float
    residual: float
    relative_residual: float
    tolerance: float
    verified: bool

    def summary(self) -> str:
        return (
            f"TwistedWeilExplicitFormulaCertificate("
            f"chi={self.character_name}, q={self.character_modulus}, "
            f"a={self.character_parity}, sigma={self.sigma:.4f}, "
            f"n_zeros={self.n_zeros_used}, "
            f"zero_side={self.zero_side:.10f}, "
            f"rhs={self.rhs_total:.10f}, "
            f"residual={self.residual:.3e}, "
            f"rel={self.relative_residual:.3e}, "
            f"verified={self.verified})"
        )


def verify_twisted_weil_explicit_formula(
    chi: DirichletCharacter,
    bundle: TwistedPrimeLadderHamiltonian,
    *,
    sigma: float = 2.0,
    t_min: float = 0.5,
    t_max: float | None = None,
    initial_step: float = 0.25,
    tolerance: float = 1e-2,
    integration_limit: float | None = None,
    dps: int = 30,
) -> TwistedWeilExplicitFormulaCertificate:
    r"""Verify Weil-Guinand for ``L(s, \chi)`` against the P34 bundle.

    The identity verified is

    .. math::

        \sum_\gamma h(\gamma)
        \;=\;
        g(0)\log(q/\pi)
        + \frac{1}{2\pi}\!\int h(t)\,\Re\psi(\tfrac14 + \tfrac{a}{2}
                                            + \tfrac{it}{2})\,dt
        + \bigl(-2\operatorname{Re}\!\sum_n \tfrac{\chi(n)\Lambda(n)}{\sqrt n}
            g(\log n)\bigr).

    The prime side is computed from the canonical TNFR P34 Hamiltonian
    in ``bundle``; the zero side is computed by Hardy-Z bisection of
    ``L(s, \chi)`` on the critical line.  The residual is the
    difference between the two sides; ``verified`` is set when
    ``|residual| < tolerance``.

    Parameters
    ----------
    chi : DirichletCharacter
        Primitive real character.  Must agree with the character used
        to build ``bundle`` (the routine checks the modulus).
    bundle : TwistedPrimeLadderHamiltonian
        P34 bundle built via
        :func:`tnfr.riemann.build_twisted_prime_ladder_hamiltonian`
        (with ``coupling = 0`` for the exact diagonal spectrum).
    sigma : float, default 2.0
        Gaussian test-function width.
    t_min : float, default 0.5
        Lower bound of zero search.
    t_max : float, optional
        Upper bound of zero search.  Defaults to ``12 * sigma``.
    initial_step : float, default 0.25
        Hardy-Z scan step (in ``t``); must be smaller than the typical
        zero spacing.
    tolerance : float, default 1e-2
        Verification tolerance applied to ``|residual|``.
    integration_limit : float, optional
        Truncation half-width of the archimedean integral.
    dps : int, default 30
        Mpmath working precision used for Hardy-Z evaluation.

    Returns
    -------
    TwistedWeilExplicitFormulaCertificate
    """
    if bundle.character_modulus != chi.modulus:
        raise ValueError(
            f"chi.modulus ({chi.modulus}) does not match "
            f"bundle.character_modulus ({bundle.character_modulus})."
        )

    test = gaussian_test_function(sigma)
    if t_max is None:
        t_max = 12.0 * sigma

    zero_total, n_used, zeros = twisted_weil_zero_side(
        chi,
        test,
        t_min=t_min,
        t_max=t_max,
        initial_step=initial_step,
        dps=dps,
    )
    const = twisted_weil_constant_term(chi, test)
    arch = twisted_weil_archimedean_integral(
        chi, test, integration_limit=integration_limit
    )
    prime = twisted_weil_prime_side_from_hamiltonian(bundle, test)
    rhs = const + arch + prime
    residual = zero_total - rhs
    denom = max(abs(zero_total), 1e-30)
    rel = abs(residual) / denom

    return TwistedWeilExplicitFormulaCertificate(
        character_name=str(chi.name),
        character_modulus=int(chi.modulus),
        character_parity=character_parity(chi),
        sigma=float(sigma),
        n_zeros_used=int(n_used),
        zeros=tuple(zeros),
        zero_side=float(zero_total),
        constant_term=float(const),
        archimedean_side=float(arch),
        prime_side=float(prime),
        rhs_total=float(rhs),
        residual=float(residual),
        relative_residual=float(rel),
        tolerance=float(tolerance),
        verified=bool(abs(residual) < tolerance),
    )