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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/riemann/von_mangoldt.py

von_mangoldt.py

Source Code

python
r"""TNFR von Mangoldt construction (P12 program — first stone).

Goal
----
Build a TNFR-native spectral object whose **weighted Dirichlet trace**
reproduces, exactly, the classical von Mangoldt series

.. math::

    -\frac{\zeta'(s)}{\zeta(s)}
      = \sum_{n=2}^{\infty} \Lambda(n)\, n^{-s}
      = \sum_{p\,\text{prime}}\sum_{k\ge 1} \log(p)\, p^{-ks},

where :math:`\Lambda(n) = \log(p)` if :math:`n = p^k` for some prime
:math:`p` and integer :math:`k \ge 1`, and :math:`\Lambda(n) = 0`
otherwise.

This is the constructive route prioritised by the May 2026 gap analysis
(see :file:`theory/TNFR_RIEMANN_RESEARCH_NOTES.md` § 7 and § 8): the
simple affine fit :math:`\zeta_H(1/2,u) \approx C\zeta_R(u+\delta)`
does not converge, so we restart from the arithmetic identity that
the bridge must respect — multiplicativity of :math:`\zeta(s)` via the
Euler product, encoded by :math:`\Lambda(n)`.

TNFR interpretation: the prime-ladder construction
--------------------------------------------------
Each prime :math:`p` is a TNFR node with a **fundamental structural
pulse** of energy :math:`\log(p)`.  The canonical REMESH operator
(recursivity, U1a / U1b in the unified grammar) generates **echoes**
at integer multiples :math:`k\cdot\log(p)`, each carrying the same
weight :math:`\log(p)` (the prime's structural emission strength).

The resulting **prime-ladder spectrum** is the disjoint union

.. math::

    \mathrm{Spec}_{TNFR} = \bigsqcup_p
      \{(\mu_{p,k}, w_{p,k}) : k = 1, 2, \dots, K_p\},
    \quad
    \mu_{p,k} = k\log(p), \quad w_{p,k} = \log(p).

Define the TNFR log-zeta-derivative as the weighted Dirichlet series

.. math::

    Z_{TNFR}(s) := \sum_{(\mu, w) \in \mathrm{Spec}_{TNFR}}
      w \cdot e^{-s\mu}.

Then by direct computation

.. math::

    Z_{TNFR}(s)
      = \sum_p \log(p) \sum_{k=1}^{K_p} p^{-ks}
      \xrightarrow[K_p\to\infty]{} \sum_p \log(p)\,
          \frac{p^{-s}}{1 - p^{-s}}
      = -\frac{\zeta'(s)}{\zeta(s)}
        \quad \text{for } \mathrm{Re}(s) > 1.

This construction has three TNFR-native features:

1. **Each prime is a node** (canonical TNFR primitive).
2. **REMESH echoes** carry the recursion across scales (operator #13).
3. **Weights = log(p)** match the structural emission strength,
   not arbitrary normalisation.

What this module does NOT do (yet)
-----------------------------------
- It does not construct an explicit self-adjoint operator on a single
  Hilbert space whose spectrum is :math:`\{k\log(p)\}` with the right
  multiplicities; it specifies the spectral data directly.  Building
  the underlying operator is § 8.2 of the research notes.
- It does not analytically continue :math:`Z_{TNFR}(s)` into
  :math:`0 < \mathrm{Re}(s) < 1`; that is § 8.3.
- It does not yet locate non-trivial zeros via this construction; that
  is § 8.4 and depends on the analytic continuation step.

Status: EXPERIMENTAL — Research prototype for TNFR-Riemann P12 program.
"""

from __future__ import annotations

import math
from dataclasses import dataclass
from typing import Sequence

from ..mathematics.unified_numerical import np
from .nodal_pulse import first_primes as _first_primes

# ---------------------------------------------------------------------------
# Public API
# ---------------------------------------------------------------------------

__all__ = [
    # Classical helpers
    "mangoldt_lambda",
    "classical_log_zeta_derivative",
    "classical_log_zeta_derivative_matched",
    # Prime-ladder spectrum
    "PrimeLadderSpectrum",
    "build_prime_ladder_spectrum",
    "tnfr_log_zeta_derivative",
    # Verification
    "VonMangoldtReproductionResult",
    "verify_von_mangoldt_reproduction",
]


# ============================================================================
# Classical reference: Λ(n) and Σ Λ(n) n^{-s}
# ============================================================================


def mangoldt_lambda(n: int) -> float:
    r"""Classical von Mangoldt function :math:`\Lambda(n)`.

    Returns :math:`\log p` if :math:`n = p^k` for some prime
    :math:`p` and integer :math:`k \ge 1`; returns 0 otherwise.

    Parameters
    ----------
    n : int
        Integer :math:`\ge 1`.

    Returns
    -------
    float
        :math:`\Lambda(n)`.
    """
    if n < 2:
        return 0.0
    # Factor out the smallest prime factor and check it captures n entirely.
    p = 2
    while p * p <= n:
        if n % p == 0:
            # Check that n is a pure power of p.
            m = n
            while m % p == 0:
                m //= p
            return math.log(p) if m == 1 else 0.0
        p += 1 if p == 2 else 2
    # n itself is prime
    return math.log(n)


def classical_log_zeta_derivative(s: float, n_max: int) -> float:
    r"""Truncated classical sum :math:`\sum_{n=2}^{n_{\max}} \Lambda(n)\, n^{-s}`.

    Implementation iterates over prime powers :math:`p^k \le n_{\max}`
    directly (since :math:`\Lambda(n) = 0` for all non-prime-power
    :math:`n`), so cost is :math:`O(\pi(n_{\max}) \log n_{\max})`
    rather than :math:`O(n_{\max})`.

    For :math:`\mathrm{Re}(s) > 1` this converges to
    :math:`-\zeta'(s)/\zeta(s)` as :math:`n_{\max} \to \infty`.

    Parameters
    ----------
    s : float
        Real part of the spectral parameter.  Must satisfy :math:`s > 1`
        for convergence; for :math:`s \le 1` the partial sum still
        evaluates but diverges in the limit.
    n_max : int
        Upper bound of the truncation.

    Returns
    -------
    float
        Partial sum :math:`\sum_{n=2}^{n_{\max}} \Lambda(n) n^{-s}`.
    """
    if n_max < 2:
        return 0.0
    # Enumerate primes p <= n_max with a sieve, then sum log(p) * p^{-ks}
    # for every prime power p^k <= n_max.
    sieve = bytearray(b"\x01") * (n_max + 1)
    sieve[0] = sieve[1] = 0
    p = 2
    while p * p <= n_max:
        if sieve[p]:
            start = p * p
            sieve[start : n_max + 1 : p] = b"\x00" * (((n_max - start) // p) + 1)
        p += 1

    total = 0.0
    for p in range(2, n_max + 1):
        if not sieve[p]:
            continue
        log_p = math.log(p)
        # Iterate prime powers p, p^2, p^3, ... <= n_max
        pk = p
        while pk <= n_max:
            total += log_p * (pk ** (-s))
            # Guard against overflow to int(>1e18 still fine for Python ints)
            pk *= p
    return total


def classical_log_zeta_derivative_matched(
    s: float,
    primes: Sequence[int],
    max_power: int,
) -> float:
    r"""Classical sum restricted to the same prime/power set as the TNFR ladder.

    Computes :math:`\sum_{p \in \mathcal{P}} \sum_{k=1}^{K} \log(p)\, p^{-ks}`
    over the **exact** spectrum that
    :func:`build_prime_ladder_spectrum` would produce.  By construction
    this equals :func:`tnfr_log_zeta_derivative` to machine precision —
    useful as a unit-test invariant.

    Parameters
    ----------
    s : float
        Spectral parameter.
    primes : sequence of int
        Same prime list used to build the TNFR spectrum.
    max_power : int
        Same REMESH echo cap :math:`K`.

    Returns
    -------
    float
    """
    total = 0.0
    for p in primes:
        log_p = math.log(p)
        for k in range(1, max_power + 1):
            total += log_p * (p ** (-k * s))
    return total


# ============================================================================
# Prime-ladder spectrum
# ============================================================================


@dataclass(frozen=True)
class PrimeLadderSpectrum:
    r"""TNFR prime-ladder spectrum :math:`\{(k\log p, \log p)\}`.

    Encodes the disjoint union of per-prime REMESH echo ladders.
    Each entry ``(eigenvalue, weight)`` represents one structural
    echo at energy :math:`\mu_{p,k} = k\log p` with weight
    :math:`w_{p,k} = \log p`.

    Attributes
    ----------
    primes : np.ndarray
        Array of primes used (length ``n_primes``).
    max_power : int
        Maximum echo index :math:`K` (same for every prime in this
        prototype; ``max_power = 1`` reproduces only the bare-prime
        contribution :math:`\sum_p \log(p) p^{-s}`).
    eigenvalues : np.ndarray
        Flattened array of energies :math:`\mu_{p,k}`, shape
        ``(n_primes * max_power,)``.
    weights : np.ndarray
        Same shape as ``eigenvalues``; each entry is :math:`\log(p)`.
    """

    primes: np.ndarray
    max_power: int
    eigenvalues: np.ndarray
    weights: np.ndarray

    @property
    def n_primes(self) -> int:
        return int(self.primes.size)

    @property
    def size(self) -> int:
        """Number of (eigenvalue, weight) pairs in the spectrum."""
        return int(self.eigenvalues.size)


def build_prime_ladder_spectrum(
    n_primes: int,
    *,
    max_power: int = 8,
    primes: Sequence[int] | None = None,
) -> PrimeLadderSpectrum:
    r"""Construct the TNFR prime-ladder spectrum.

    Builds the spectral data

    .. math::

        \{(\mu_{p,k}, w_{p,k}) :
          p \in \mathcal{P}_{n_{\mathrm{primes}}}, \;
          k = 1, \dots, K\},
        \quad
        \mu_{p,k} = k\log p, \quad w_{p,k} = \log p.

    Parameters
    ----------
    n_primes : int
        Number of primes :math:`|\mathcal{P}|` (ignored if ``primes``
        is supplied).
    max_power : int, default 8
        Maximum REMESH echo index :math:`K`.  Larger ``max_power``
        captures higher-order prime-power contributions
        :math:`p^k` for ``k`` up to ``max_power``.  Truncation error
        for :math:`s > 1` is bounded by
        :math:`\sum_p \log(p) p^{-s(K+1)}/(1 - p^{-s})`.
    primes : sequence of int, optional
        Explicit prime list.  If given, ``n_primes`` is ignored.

    Returns
    -------
    PrimeLadderSpectrum
    """
    if max_power < 1:
        raise ValueError("max_power must be >= 1")

    if primes is None:
        if n_primes < 1:
            raise ValueError("n_primes must be >= 1")
        prime_list = _first_primes(n_primes)
    else:
        prime_list = list(primes)
        if not prime_list:
            raise ValueError("primes must be non-empty")

    p_arr = np.asarray(prime_list, dtype=float)
    log_p = np.log(p_arr)  # shape (n_primes,)

    k_arr = np.arange(1, max_power + 1, dtype=float)  # shape (max_power,)

    # eigenvalues[i, k-1] = k * log(p_i); weights[i, k-1] = log(p_i)
    mu = np.outer(log_p, k_arr)  # (n_primes, max_power)
    w = np.broadcast_to(log_p[:, None], mu.shape).copy()

    return PrimeLadderSpectrum(
        primes=np.asarray(prime_list, dtype=int),
        max_power=int(max_power),
        eigenvalues=mu.ravel(),
        weights=w.ravel(),
    )


def tnfr_log_zeta_derivative(
    spectrum: PrimeLadderSpectrum,
    s: float | complex,
) -> complex:
    r"""Weighted Dirichlet trace :math:`Z_{TNFR}(s) = \sum w\, e^{-s\mu}`.

    Evaluates the TNFR analogue of :math:`-\zeta'(s)/\zeta(s)` from the
    prime-ladder spectrum.

    Parameters
    ----------
    spectrum : PrimeLadderSpectrum
        Spectral data from :func:`build_prime_ladder_spectrum`.
    s : float or complex
        Spectral parameter.  Convergence in the prime-count limit
        requires :math:`\mathrm{Re}(s) > 1`.

    Returns
    -------
    complex
        :math:`Z_{TNFR}(s)`.  Returns a real float if ``s`` is real.
    """
    s_c = complex(s)
    # exp(-s * mu) = p^{-k s} since mu = k log p
    z = np.sum(spectrum.weights * np.exp(-s_c * spectrum.eigenvalues))
    return complex(z) if isinstance(s, complex) else float(z.real)


# ============================================================================
# Verification: prime-ladder Z_TNFR vs classical Σ Λ(n) n^{-s}
# ============================================================================


@dataclass(frozen=True)
class VonMangoldtReproductionResult:
    r"""Numerical comparison of :math:`Z_{TNFR}(s)` vs the classical series.

    Attributes
    ----------
    s_values : np.ndarray
        Real spectral parameters tested.
    n_primes : int
        Number of primes used in the TNFR spectrum.
    max_power : int
        REMESH echo cap used.
    n_max_classical : int
        Truncation bound used in the classical Dirichlet sum.
    z_tnfr : np.ndarray
        :math:`Z_{TNFR}(s)` for each ``s``.
    z_classical : np.ndarray
        Truncated classical sum :math:`\sum_{n\le N}\Lambda(n) n^{-s}`.
    abs_error : np.ndarray
        :math:`|Z_{TNFR}(s) - Z_{\mathrm{classical}}(s)|`.
    rel_error : np.ndarray
        ``abs_error / |z_classical|``.
    max_rel_error : float
        Worst-case relative error over ``s_values``.
    """

    s_values: np.ndarray
    n_primes: int
    max_power: int
    n_max_classical: int
    z_tnfr: np.ndarray
    z_classical: np.ndarray
    abs_error: np.ndarray
    rel_error: np.ndarray
    max_rel_error: float

    def summary(self) -> str:
        return (
            f"VonMangoldt reproduction:  "
            f"n_primes={self.n_primes}, max_power={self.max_power}, "
            f"n_max_classical={self.n_max_classical}, "
            f"max_rel_error={self.max_rel_error:.3e}"
        )


def verify_von_mangoldt_reproduction(
    s_values: Sequence[float],
    *,
    n_primes: int = 200,
    max_power: int = 12,
    n_max_classical: int = 100_000,
) -> VonMangoldtReproductionResult:
    r"""Numerically verify :math:`Z_{TNFR}(s) \approx \sum_{n\le N}\Lambda(n) n^{-s}`.

    Both sides are truncations of :math:`-\zeta'(s)/\zeta(s)`:

    - TNFR side: prime-ladder spectrum with ``n_primes`` primes and
      ``max_power`` echoes.
    - Classical side: direct sum over prime powers
      :math:`p^k \le n_{\max,\mathrm{classical}}` evaluated through
      :func:`classical_log_zeta_derivative`.

    Each Λ-contribution :math:`\log(p)\, p^{-ks}` corresponds **by
    construction** to exactly one entry :math:`(\mu_{p,k}, w_{p,k})`
    of the TNFR spectrum.  Therefore, when the two truncations cover
    the same set of prime powers, the sums agree exactly modulo
    floating-point rounding.  When they cover different sets, the
    discrepancy is the difference of their truncation tails relative
    to the analytic limit :math:`-\zeta'(s)/\zeta(s)`.

    Parameters
    ----------
    s_values : sequence of float
        Real spectral parameters at which to evaluate both sides.
    n_primes : int, default 200
    max_power : int, default 12
    n_max_classical : int, default 100_000
        Upper bound for the classical sieve.  Increasing this improves
        the classical reference and tightens the comparison.

    Returns
    -------
    VonMangoldtReproductionResult
    """
    spectrum = build_prime_ladder_spectrum(n_primes, max_power=max_power)

    s_arr = np.asarray(list(s_values), dtype=float)
    z_tnfr = np.array(
        [tnfr_log_zeta_derivative(spectrum, float(s)) for s in s_arr],
        dtype=float,
    )
    z_classical = np.array(
        [classical_log_zeta_derivative(float(s), n_max_classical) for s in s_arr],
        dtype=float,
    )

    abs_err = np.abs(z_tnfr - z_classical)
    with np.errstate(divide="ignore", invalid="ignore"):
        rel_err = np.where(
            np.abs(z_classical) > 1e-15,
            abs_err / np.abs(z_classical),
            abs_err,
        )

    return VonMangoldtReproductionResult(
        s_values=s_arr,
        n_primes=spectrum.n_primes,
        max_power=spectrum.max_power,
        n_max_classical=int(n_max_classical),
        z_tnfr=z_tnfr,
        z_classical=z_classical,
        abs_error=abs_err,
        rel_error=rel_err,
        max_rel_error=float(np.max(rel_err)),
    )