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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: src/tnfr/riemann/weil_explicit_formula.py

weil_explicit_formula.py

Source Code

python
r"""TNFR-Riemann P15 — Weil/Guinand explicit formula.

This module implements a numerical verification of the classical
**Weil-Guinand explicit formula** linking the non-trivial zeros of
the Riemann zeta function to the spectrum of the canonical TNFR
prime-ladder Hamiltonian constructed in P14
(:mod:`tnfr.riemann.prime_ladder_hamiltonian`).

Mathematical statement
----------------------

Let ``h`` be a real, even Schwartz test function on the real line
with Fourier transform

.. math::

    g(u) \;=\; \frac{1}{2\pi}
        \int_{-\infty}^{\infty} h(t)\, e^{-itu}\, dt.

The Weil-Guinand explicit formula reads

.. math::

    \sum_{\gamma} h(\gamma)
       \;=\;
       h\!\bigl(i/2\bigr) + h\!\bigl(-i/2\bigr)
       \;-\; g(0)\,\log\pi
       \;+\; \frac{1}{2\pi}\!\int_{-\infty}^{\infty}\!\!
            h(t)\,\operatorname{Re}\psi\!\Bigl(\tfrac14 + \tfrac{it}{2}\Bigr)\, dt
       \;-\; 2 \sum_{n\ge 1} \frac{\Lambda(n)}{\sqrt{n}}\, g(\log n),

where the left-hand sum runs over the imaginary parts ``\gamma`` of
all non-trivial zeros ``\rho = 1/2 + i\gamma`` of ``\zeta(s)``,
``\psi`` is the digamma function and ``\Lambda`` is the von
Mangoldt function.

Connection to TNFR P14
----------------------

The prime-power sum on the right is **exactly** a spectral
functional on the P14 Hamiltonian
``H = \operatorname{diag}(k\log p)`` with weight operator
``W = \operatorname{diag}(\log p)``:

.. math::

    -2 \sum_{n\ge 1} \frac{\Lambda(n)}{\sqrt{n}}\, g(\log n)
       \;=\;
       -2 \operatorname{Tr}\!\bigl(\hat W\, e^{-\hat H / 2}\, g(\hat H)\bigr),

since ``n = p^k`` gives ``\Lambda(n) = \log p``, ``\sqrt n =
e^{(k\log p)/2}`` and ``g(\log n) = g(k\log p)``.  Each eigenvalue
``E_n = k\log p`` of the P14 Hamiltonian is a node ``|p,k\rangle``
with weight ``\log p``.  This is the canonical TNFR realisation of
the prime side of Weil's formula.

What this module proves and what it does not
--------------------------------------------

This module verifies the Weil-Guinand identity **numerically** with
a Gaussian test function family

.. math:: h_{\sigma}(t) = \exp\!\bigl(-t^2/(2\sigma^2)\bigr).

It does **not** prove the Riemann Hypothesis.  The explicit
formula is a *theorem* of analytic number theory (Riemann 1859,
Guinand 1948, Weil 1952) that holds **independently of the
location of the zeros**.  RH affects only the placement of the
``\gamma`` along the real line; the identity itself is unconditional.

What is *new* here is purely an instrumental result: the prime
side of Weil's formula is computable to machine precision from the
canonical TNFR P14 Hamiltonian, with no extra arithmetic
machinery.  This closes gap G3 of the TNFR-Riemann programme in
its operational sense — every term of Weil's bridge between
primes and zeros is exhibited inside the canonical TNFR formalism.
Gap G4 (localisation of zeros on Re(s)=1/2) is RH itself and
remains open.
"""

from __future__ import annotations

import math
from dataclasses import dataclass

import mpmath
from scipy import integrate

from ..mathematics.unified_numerical import np
from .prime_ladder_hamiltonian import PrimeLadderHamiltonian

__all__ = [
    "GaussianTestFunction",
    "gaussian_test_function",
    "weil_pole_side",
    "weil_archimedean_integral",
    "weil_prime_side_from_hamiltonian",
    "weil_zero_side",
    "WeilExplicitFormulaCertificate",
    "verify_weil_explicit_formula",
]


# ----------------------------------------------------------------------
# Gaussian test family
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class GaussianTestFunction:
    r"""Gaussian test function ``h(t) = exp(-t^2 / (2 sigma^2))``.

    The Fourier transform under the convention

    .. math::

        g(u) = \frac{1}{2\pi}\int h(t)\,e^{-itu}\,dt

    is also Gaussian:

    .. math:: g(u) = \frac{\sigma}{\sqrt{2\pi}}
                     \exp\!\bigl(-\sigma^2 u^2 / 2\bigr).
    """

    sigma: float

    def h(self, t: float) -> float:
        """Evaluate ``h(t)`` on the real line."""
        return math.exp(-(t**2) / (2.0 * self.sigma**2))

    def h_complex(self, t: complex) -> complex:
        """Evaluate ``h(t)`` for complex argument (analytic extension)."""
        return complex(np.exp(-(t**2) / (2.0 * self.sigma**2)))

    def g(self, u: float) -> float:
        """Evaluate the Fourier transform ``g(u)`` on the real line."""
        sigma = self.sigma
        return (sigma / math.sqrt(2.0 * math.pi)) * math.exp(-(sigma**2) * u**2 / 2.0)

    def g_zero(self) -> float:
        """Return ``g(0) = sigma / sqrt(2 pi)``."""
        return self.sigma / math.sqrt(2.0 * math.pi)

    def h_at_half_pole(self) -> float:
        r"""Return ``h(i/2) = h(-i/2) = exp(1 / (8 sigma^2))``."""
        return math.exp(1.0 / (8.0 * self.sigma**2))


def gaussian_test_function(sigma: float) -> GaussianTestFunction:
    """Construct a :class:`GaussianTestFunction` of width ``sigma``."""
    if sigma <= 0.0:
        raise ValueError("sigma must be strictly positive")
    return GaussianTestFunction(sigma=float(sigma))


# ----------------------------------------------------------------------
# Individual terms of the Weil formula
# ----------------------------------------------------------------------


def weil_pole_side(test: GaussianTestFunction) -> float:
    r"""Return ``h(i/2) + h(-i/2)`` (poles of ``\zeta`` at ``s=0,1``)."""
    return 2.0 * test.h_at_half_pole()


def _digamma_real_part(t: float) -> float:
    """Return ``Re psi(1/4 + i t / 2)`` via mpmath."""
    val = mpmath.digamma(mpmath.mpc(0.25, t / 2.0))
    return float(val.real)


def weil_archimedean_integral(
    test: GaussianTestFunction,
    *,
    integration_limit: float | None = None,
    quad_kwargs: dict | None = None,
) -> float:
    r"""Compute the archimedean integral

    .. math::

        \frac{1}{2\pi}\int_{-\infty}^{\infty}
            h(t)\,\operatorname{Re}\psi\!\Bigl(\tfrac14 + \tfrac{it}{2}\Bigr)\, dt.

    The integral is evaluated by :func:`scipy.integrate.quad` after
    truncating the domain to ``[-L, L]`` with ``L`` chosen so that
    the Gaussian envelope is negligible.
    """
    if integration_limit is None:
        # h(t) decays as exp(-t^2 / (2 sigma^2)); choose L = 10 sigma
        integration_limit = 10.0 * test.sigma
    kw = {"limit": 200, "epsabs": 1e-14, "epsrel": 1e-12}
    if quad_kwargs:
        kw.update(quad_kwargs)

    def integrand(t: float) -> float:
        return test.h(t) * _digamma_real_part(t)

    val, _err = integrate.quad(integrand, -integration_limit, integration_limit, **kw)
    return float(val / (2.0 * math.pi))


def weil_prime_side_from_hamiltonian(
    bundle: PrimeLadderHamiltonian,
    test: GaussianTestFunction,
) -> float:
    r"""Compute the prime-power side of Weil's formula from P14.

    Returns

    .. math::

        -2 \operatorname{Tr}\!\bigl(\hat W e^{-\hat H/2} g(\hat H)\bigr)
        \;=\;
        -2 \sum_{(p,k)} \log(p)\, e^{-k\log(p)/2}\, g(k\log p),

    using the eigendecomposition of ``\hat H_{\text{int}}`` carried
    by ``bundle.hamiltonian``.  At ``J_0 = 0`` the Hamiltonian is
    diagonal and the trace collapses to a simple weighted sum over
    nodes ``(p, k)``.
    """
    eigvals, eigvecs = bundle.hamiltonian.get_spectrum()
    eigvals_real = np.real(eigvals)
    g_values = np.array([test.g(float(e)) for e in eigvals_real], dtype=float)
    half_decay = np.exp(-eigvals_real / 2.0)
    # Diagonal weight operator in the node basis
    weights_diag = np.real(np.diag(bundle.weight_operator))
    # Transform weight operator to eigenbasis: <e_i|W|e_i>
    # = sum_n |<n|e_i>|^2 W_nn
    W_diag_eig = np.einsum("ni,n,ni->i", np.conj(eigvecs), weights_diag, eigvecs).real
    contributions = W_diag_eig * half_decay * g_values
    return float(-2.0 * np.sum(contributions))


def weil_zero_side(
    test: GaussianTestFunction,
    *,
    n_zeros: int = 50,
    convergence_tol: float = 1e-12,
    max_zeros: int = 500,
) -> tuple[float, int]:
    r"""Compute ``\sum_{\gamma > 0} 2 h(\gamma)`` over Riemann zeros.

    The sum is doubled because the trivial-zero-free zeros of
    ``\zeta`` come in conjugate pairs ``\rho = 1/2 \pm i\gamma``
    and ``h`` is real and even.

    Parameters
    ----------
    test
        Gaussian test function.
    n_zeros
        Initial number of zeros to use from :func:`mpmath.zetazero`.
    convergence_tol
        Stop adding zeros once the per-zero contribution falls
        below this threshold.
    max_zeros
        Hard cap to prevent runaway loops.

    Returns
    -------
    total
        The truncated sum.
    n_used
        Number of positive-axis zeros actually used.
    """
    total = 0.0
    n_used = 0
    for n in range(1, max_zeros + 1):
        gamma_n = float(mpmath.zetazero(n).imag)
        contribution = 2.0 * test.h(gamma_n)
        total += contribution
        n_used = n
        if n >= n_zeros and contribution < convergence_tol:
            break
    return float(total), n_used


# ----------------------------------------------------------------------
# Certificate and high-level verification driver
# ----------------------------------------------------------------------


@dataclass(frozen=True)
class WeilExplicitFormulaCertificate:
    """Outcome of :func:`verify_weil_explicit_formula`."""

    sigma: float
    n_zeros_used: int
    zero_side: float
    pole_side: float
    archimedean_side: float
    prime_side: float
    rhs_total: float
    residual: float
    relative_residual: float
    tolerance: float
    verified: bool

    def summary(self) -> str:
        return (
            f"WeilExplicitFormulaCertificate("
            f"sigma={self.sigma:.4f}, "
            f"n_zeros={self.n_zeros_used}, "
            f"zero_side={self.zero_side:.10f}, "
            f"rhs={self.rhs_total:.10f}, "
            f"residual={self.residual:.3e}, "
            f"rel={self.relative_residual:.3e}, "
            f"verified={self.verified})"
        )


def verify_weil_explicit_formula(
    bundle: PrimeLadderHamiltonian,
    *,
    sigma: float = 2.0,
    n_zeros: int = 80,
    convergence_tol: float = 1e-12,
    max_zeros: int = 500,
    tolerance: float = 1e-3,
    integration_limit: float | None = None,
) -> WeilExplicitFormulaCertificate:
    r"""Verify Weil's explicit formula numerically against P14.

    The identity verified is

    .. math::

        \underbrace{\sum_{\gamma} h(\gamma)}_{\text{zero side}}
        \;=\;
        \underbrace{h(i/2) + h(-i/2)}_{\text{pole side}}
        \;-\; g(0)\log\pi
        \;+\; \underbrace{\tfrac{1}{2\pi}\!\int h(t)\,\Re\psi(\tfrac14+\tfrac{it}{2})dt}_{\text{archimedean side}}
        \;+\; \underbrace{\bigl(-2\sum_n \tfrac{\Lambda(n)}{\sqrt n}g(\log n)\bigr)}_{\text{prime side from P14}}.

    The residual is the difference of the two sides; ``verified``
    is set when ``|residual| < tolerance``.

    Notes
    -----
    The prime side is truncated by the finite size of ``bundle``
    (it contains only the first ``n_primes`` primes and echo depths
    ``k <= max_power``).  For ``sigma`` small enough that ``g`` has
    negligible support beyond the Hamiltonian's spectral support,
    the truncation error is dominated by the zero-side and
    archimedean-integral truncations rather than by the prime-side
    cutoff.
    """
    test = gaussian_test_function(sigma)
    zero_total, n_used = weil_zero_side(
        test,
        n_zeros=n_zeros,
        convergence_tol=convergence_tol,
        max_zeros=max_zeros,
    )
    pole = weil_pole_side(test)
    arch = weil_archimedean_integral(test, integration_limit=integration_limit)
    prime = weil_prime_side_from_hamiltonian(bundle, test)
    log_pi_term = -test.g_zero() * math.log(math.pi)
    rhs = pole + log_pi_term + arch + prime
    residual = zero_total - rhs
    denom = max(abs(zero_total), 1e-30)
    rel = abs(residual) / denom
    return WeilExplicitFormulaCertificate(
        sigma=float(sigma),
        n_zeros_used=int(n_used),
        zero_side=float(zero_total),
        pole_side=float(pole + log_pi_term),
        archimedean_side=float(arch),
        prime_side=float(prime),
        rhs_total=float(rhs),
        residual=float(residual),
        relative_residual=float(rel),
        tolerance=float(tolerance),
        verified=bool(abs(residual) < tolerance),
    )