TNFR Logo
TheoryLearnSoftwareResearch

On this page

TNFR

Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

About
  • Project history
  • Editorial policy
  • Contact
Resources
  • GitHub
  • PyPI
  • DOI · Zenodo
Legal
  • MIT License
  • Citation
© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
.pre-commit-config.yaml.semgrep.yaml.zenodo.jsonARCHITECTURE.mdbandit.yamlCHANGELOG.mdCITATION.cffCONTRIBUTING.mdEMERGENT_CANON_AUDIT.mdEMERGENT_DERIVATION_PLAN.mdLICENSE.mdMakefileMANIFEST.inpyproject.tomlpyrightconfig.jsonPYTORCH_CUDA_INTEGRATION.mdREADME.mdSECURITY.mdTESTING.mdTNFR_Website_Content_Brief.md
FILE: src/tnfr/riemann/weil_positivity.py

weil_positivity.py

Source Code

python
r"""P17: Weil positivity bridge between the RH-equivalent Weil functional
and the canonical TNFR Lyapunov energy.

Mathematical background
-----------------------

For a real, even Schwartz test function :math:`f` with positive
Fourier-Plancherel image :math:`h(t) := |\hat f(t)|^2`, the
**Weil positivity criterion** (Weil 1952, Bombieri 2000) states

.. math::

    \text{RH}\ \Longleftrightarrow\
    W[f]\;:=\;\sum_{\gamma}\, h(\gamma)\ \ge\ 0
    \quad\text{for every admissible } f,

where the sum ranges over the imaginary parts :math:`\gamma` of the
non-trivial zeros :math:`\rho = 1/2 + i\gamma` of :math:`\zeta(s)`.
(If some :math:`\gamma` were complex, the Gaussian-type :math:`h` would
take complex values whose real part can be negative — so positivity of
:math:`W[f]` over a dense admissible family is strictly equivalent to
RH.)

This module performs two operations:

1. **Weil-positivity certificate**.  For the Gaussian admissible family
   :math:`h_\sigma(t) = \exp(-t^2/(2\sigma^2))` (this is :math:`|\hat
   f_\sigma|^2` with :math:`f_\sigma` Gaussian), it computes
   :math:`W[\sigma]` two ways — directly from the zero side and via the
   Weil-Guinand explicit formula evaluated with the P14 prime-ladder
   Hamiltonian — and reports whether :math:`W[\sigma] \ge 0`.  This is
   the RH-equivalent diagnostic, in pure TNFR form.

2. **TNFR-Lyapunov bridge**.  It defines a *canonical structural test
   state* on the P14 prime-ladder graph driven by the same Gaussian
   profile :math:`h_\sigma`, computes the canonical TNFR Lyapunov
   energy :math:`E_{\mathrm{TNFR}}[\sigma]` via
   :func:`tnfr.physics.conservation.compute_energy_functional`, and
   tabulates the ratio :math:`\alpha(\sigma) := W[\sigma]\,/\,
   E_{\mathrm{TNFR}}[\sigma]` across a grid of widths.  If
   :math:`\alpha(\sigma) > 0` uniformly across an admissible family,
   the inequality :math:`W[\sigma] \ge \alpha \cdot E_{\mathrm{TNFR}}
   [\sigma]` constitutes a TNFR-native lower-bound witness for the
   Weil positivity functional.

Honesty disclaimer
------------------
This module **does not prove** the Riemann Hypothesis.  Weil positivity
is RH-equivalent in the limit of a dense admissible family; this module
checks it numerically on a Gaussian grid.  The structural test state
defined here is one *natural* TNFR mapping of :math:`h_\sigma` to the
P14 graph, not the unique one — different mappings yield different
:math:`E_{\mathrm{TNFR}}[\sigma]`.  The bridge certificate reports
:math:`\alpha(\sigma)` for *this* mapping and serves as a structural
diagnostic, not as a theorem of analytic number theory.

Status: EXPERIMENTAL — Research prototype for TNFR-Riemann P17 program.
The deliverable closes the operational distance between the canonical
TNFR Lyapunov positivity (Structural Conservation Theorem) and the
RH-equivalent Weil positivity functional; it does *not* close gap G4
(RH itself), which would require promoting the numerical inequality
:math:`W[\sigma] \ge \alpha \cdot E_{\mathrm{TNFR}}[\sigma]` to a
theorem over a dense admissible class.
"""

from __future__ import annotations

import math
from dataclasses import dataclass
from typing import Sequence

import networkx as nx

from ..mathematics.unified_numerical import np
from ..physics.conservation import compute_energy_functional
from .prime_ladder_hamiltonian import PrimeLadderHamiltonian
from .weil_explicit_formula import (
    gaussian_test_function,
    weil_archimedean_integral,
    weil_pole_side,
    weil_prime_side_from_hamiltonian,
    weil_zero_side,
)

__all__ = [
    "WeilPositivityCertificate",
    "WeilTNFRBridgeCertificate",
    "build_structural_test_state",
    "tnfr_lyapunov_of_test_state",
    "verify_weil_positivity",
    "verify_weil_tnfr_bridge",
]


# ---------------------------------------------------------------------------
# Certificates
# ---------------------------------------------------------------------------


@dataclass(frozen=True)
class WeilPositivityCertificate:
    r"""Outcome of :func:`verify_weil_positivity` for a single :math:`\sigma`.

    Attributes
    ----------
    sigma
        Width of the Gaussian admissible test function
        :math:`h_\sigma(t) = \exp(-t^2 / (2\sigma^2))`.
    weil_functional_zero_side
        :math:`W[\sigma] = \sum_{\gamma} h_\sigma(\gamma)` from the
        classical zero side (sum over Riemann zeros).
    weil_functional_explicit_formula
        Same quantity computed via the Weil-Guinand explicit formula
        using the P14 Hamiltonian for the prime side.
    explicit_formula_residual
        Difference between the two computations; a small residual
        confirms self-consistency with P15.
    n_zeros_used
        Number of positive-axis zeros used for the zero-side sum.
    positive
        Boolean: ``True`` iff :math:`W[\sigma] \ge 0` (Weil positivity
        satisfied for this test function).
    """

    sigma: float
    weil_functional_zero_side: float
    weil_functional_explicit_formula: float
    explicit_formula_residual: float
    n_zeros_used: int
    positive: bool

    def summary(self) -> str:
        return (
            "WeilPositivityCertificate("
            f"sigma={self.sigma:.4f}, "
            f"W_zero={self.weil_functional_zero_side:.6e}, "
            f"W_xf={self.weil_functional_explicit_formula:.6e}, "
            f"residual={self.explicit_formula_residual:.2e}, "
            f"n_zeros={self.n_zeros_used}, "
            f"positive={self.positive})"
        )


@dataclass(frozen=True)
class WeilTNFRBridgeCertificate:
    r"""Outcome of :func:`verify_weil_tnfr_bridge` across a :math:`\sigma` grid.

    Attributes
    ----------
    sigmas
        Grid of widths evaluated.
    weil_functional
        :math:`W[\sigma]` per width (zero-side computation).
    tnfr_lyapunov_energy
        :math:`E_{\mathrm{TNFR}}[\sigma]` per width.
    alpha
        :math:`\alpha(\sigma) = W[\sigma] / E_{\mathrm{TNFR}}[\sigma]`
        per width (``inf`` when energy is zero).
    weil_positive
        Boolean per width: ``W[\sigma] \ge 0``.
    bridge_positive
        Boolean per width: ``alpha(\sigma) > 0``.
    weil_positive_all
        Aggregate: ``all(weil_positive)``.
    bridge_positive_all
        Aggregate: ``all(bridge_positive)``.
    alpha_min
        Minimum :math:`\alpha` across the grid (lower bound candidate).
    alpha_max
        Maximum :math:`\alpha` across the grid (upper bound).
    """

    sigmas: np.ndarray
    weil_functional: np.ndarray
    tnfr_lyapunov_energy: np.ndarray
    alpha: np.ndarray
    weil_positive: np.ndarray
    bridge_positive: np.ndarray
    weil_positive_all: bool
    bridge_positive_all: bool
    alpha_min: float
    alpha_max: float

    def summary(self) -> str:
        return (
            "WeilTNFRBridgeCertificate("
            f"n_sigma={len(self.sigmas)}, "
            f"sigma_range=[{float(self.sigmas[0]):.3f}, "
            f"{float(self.sigmas[-1]):.3f}], "
            f"W_all_positive={self.weil_positive_all}, "
            f"alpha_all_positive={self.bridge_positive_all}, "
            f"alpha_min={self.alpha_min:.4e}, "
            f"alpha_max={self.alpha_max:.4e})"
        )


# ---------------------------------------------------------------------------
# Structural test state on the P14 prime-ladder graph
# ---------------------------------------------------------------------------


def build_structural_test_state(
    bundle: PrimeLadderHamiltonian,
    sigma: float,
) -> nx.Graph:
    r"""Map the Gaussian test profile :math:`h_\sigma` onto the P14 graph.

    For each prime-ladder node :math:`(p, k)` with structural energy
    :math:`E_n = k \log p`, the following structural attributes are
    written on a *copy* of ``bundle.graph``:

    * ``dnfr_(p,k) = h_\sigma(E_n) = exp(-E_n^2 / (2 sigma^2))``
      — the test profile becomes the local reorganisation pressure.
    * ``phase_(p,k) = wrap(h_\sigma(E_n))``
      — same profile drives a small phase gradient along each ladder,
      so that :math:`|\nabla\phi|` and :math:`K_\phi` are non-zero.
    * ``EPI_(p,k) = h_\sigma(E_n)``
      — primary information amplitude tracks the test profile.
    * ``nu_f_(p,k) = E_n``
      — inherited unchanged from the P14 construction.

    Rationale
    ---------
    This is a *canonical* (but not unique) TNFR realisation of the test
    function :math:`h_\sigma`.  The ``dnfr`` channel feeds
    :math:`\Phi_s = \sum_j \mathrm{dnfr}_j / d(i,j)^2`; the ``phase``
    channel feeds :math:`|\nabla\phi|` and :math:`K_\phi`; the result
    is a structural state in which every component of the tetrad
    responds to :math:`h_\sigma`.  Different mappings (e.g. encoding
    :math:`h_\sigma` only in ``phase`` or only in ``dnfr``) would
    activate different sectors of the Lyapunov functional and yield
    different :math:`E_{\mathrm{TNFR}}[\sigma]`.

    Parameters
    ----------
    bundle
        Prime-ladder Hamiltonian bundle from P14.
    sigma
        Width of the Gaussian test function (must be positive).

    Returns
    -------
    networkx.Graph
        A copy of ``bundle.graph`` with structural attributes overwritten.

    Raises
    ------
    ValueError
        If ``sigma <= 0``.
    """
    if sigma <= 0.0:
        raise ValueError("sigma must be strictly positive")

    G = bundle.graph.copy()
    inv_two_sigma_sq = 1.0 / (2.0 * sigma * sigma)

    for node in G.nodes():
        p, k = node
        E_n = float(k) * math.log(float(p))
        h_val = math.exp(-(E_n * E_n) * inv_two_sigma_sq)
        # Wrap into [-pi, pi] (h_val is in (0, 1] so always in-range)
        phase = h_val if h_val <= math.pi else math.pi
        G.nodes[node]["dnfr"] = h_val
        G.nodes[node]["phase"] = phase
        G.nodes[node]["EPI"] = h_val
        # nu_f stays as set by build_prime_ladder_graph (k * log p)
    return G


def tnfr_lyapunov_of_test_state(
    bundle: PrimeLadderHamiltonian,
    sigma: float,
) -> float:
    r"""Compute the canonical TNFR Lyapunov energy
    :math:`E_{\mathrm{TNFR}}[\sigma]` for the structural test state.

    Equivalent to::

        G = build_structural_test_state(bundle, sigma)
        return compute_energy_functional(G)

    The Lyapunov energy is the canonical structural functional

    .. math::

        E[G] \;=\; \tfrac12\sum_i\bigl[\Phi_s^2(i) + |\nabla\phi|^2(i)
                  + K_\phi^2(i) + J_\phi^2(i) + J_{\Delta\!NFR}^2(i)\bigr],

    guaranteed non-negative by construction.  Under grammar-compliant
    evolution (U1-U6) the time derivative is non-positive (Structural
    Conservation Theorem, see :mod:`tnfr.physics.conservation`).
    """
    G = build_structural_test_state(bundle, sigma)
    return compute_energy_functional(G)


# ---------------------------------------------------------------------------
# Verification drivers
# ---------------------------------------------------------------------------


def verify_weil_positivity(
    bundle: PrimeLadderHamiltonian,
    *,
    sigma: float = 2.0,
    n_zeros: int = 80,
    convergence_tol: float = 1e-12,
    max_zeros: int = 500,
    integration_limit: float | None = None,
) -> WeilPositivityCertificate:
    r"""Verify the Weil positivity functional :math:`W[\sigma] \ge 0`.

    Computes :math:`W[\sigma] := \sum_\gamma h_\sigma(\gamma)` two ways:

    * **Zero side**: sum over Riemann zeros via :mod:`mpmath` (reuses
      :func:`weil_zero_side` from P15).
    * **Explicit formula side**: pole + archimedean + prime sides per
      the Weil-Guinand identity, with the prime side computed from the
      P14 Hamiltonian via :func:`weil_prime_side_from_hamiltonian`.

    The two computations are exposed independently; their difference
    is the consistency residual (which should be small if P15 is
    consistent for this :math:`\sigma`).

    Parameters
    ----------
    bundle
        Prime-ladder Hamiltonian bundle from P14.
    sigma
        Width of the Gaussian test function.
    n_zeros, convergence_tol, max_zeros
        Forwarded to :func:`weil_zero_side`.
    integration_limit
        Forwarded to :func:`weil_archimedean_integral`.

    Returns
    -------
    WeilPositivityCertificate
        Frozen result with both computations, residual, and positivity
        flag.
    """
    test = gaussian_test_function(sigma)

    zero_side, n_used = weil_zero_side(
        test,
        n_zeros=n_zeros,
        convergence_tol=convergence_tol,
        max_zeros=max_zeros,
    )

    pole_side = weil_pole_side(test)
    arch_side = weil_archimedean_integral(test, integration_limit=integration_limit)
    prime_side = weil_prime_side_from_hamiltonian(bundle, test)
    g_zero = test.g_zero()
    explicit_formula_rhs = (
        pole_side - g_zero * math.log(math.pi) + arch_side + prime_side
    )

    residual = float(abs(zero_side - explicit_formula_rhs))
    positive = bool(zero_side >= 0.0)

    return WeilPositivityCertificate(
        sigma=float(sigma),
        weil_functional_zero_side=float(zero_side),
        weil_functional_explicit_formula=float(explicit_formula_rhs),
        explicit_formula_residual=residual,
        n_zeros_used=int(n_used),
        positive=positive,
    )


def verify_weil_tnfr_bridge(
    bundle: PrimeLadderHamiltonian,
    sigmas: Sequence[float],
    *,
    n_zeros: int = 80,
    convergence_tol: float = 1e-12,
    max_zeros: int = 500,
) -> WeilTNFRBridgeCertificate:
    r"""Tabulate the TNFR-Weil positivity bridge across a :math:`\sigma` grid.

    For each :math:`\sigma` in ``sigmas``, computes

    * :math:`W[\sigma]` via :func:`verify_weil_positivity` (zero side),
    * :math:`E_{\mathrm{TNFR}}[\sigma]` via
      :func:`tnfr_lyapunov_of_test_state`,
    * :math:`\alpha(\sigma) = W[\sigma] / E_{\mathrm{TNFR}}[\sigma]`.

    A constant positive lower bound :math:`\alpha_{\min} > 0` across a
    dense admissible family would constitute a TNFR-native witness for
    the Weil positivity inequality (and hence, via Weil's equivalence,
    for the Riemann Hypothesis).  This module checks the inequality
    numerically; it does not prove uniform positivity.

    Parameters
    ----------
    bundle
        Prime-ladder Hamiltonian bundle from P14.
    sigmas
        Grid of Gaussian widths to evaluate.
    n_zeros, convergence_tol, max_zeros
        Forwarded to :func:`verify_weil_positivity` for the zero-side
        sum.

    Returns
    -------
    WeilTNFRBridgeCertificate
        Frozen result with per-:math:`\sigma` arrays and aggregate
        positivity flags.

    Raises
    ------
    ValueError
        If ``sigmas`` is empty or contains non-positive values.
    """
    sigma_array = np.array(list(sigmas), dtype=float)
    if sigma_array.size == 0:
        raise ValueError("sigmas must be non-empty")
    if np.any(sigma_array <= 0.0):
        raise ValueError("all sigmas must be strictly positive")

    n = sigma_array.size
    W_vals = np.zeros(n, dtype=float)
    E_vals = np.zeros(n, dtype=float)
    alpha_vals = np.zeros(n, dtype=float)
    weil_pos = np.zeros(n, dtype=bool)
    bridge_pos = np.zeros(n, dtype=bool)

    for i, sigma in enumerate(sigma_array):
        sigma_f = float(sigma)
        cert = verify_weil_positivity(
            bundle,
            sigma=sigma_f,
            n_zeros=n_zeros,
            convergence_tol=convergence_tol,
            max_zeros=max_zeros,
        )
        W = float(cert.weil_functional_zero_side)
        E = float(tnfr_lyapunov_of_test_state(bundle, sigma_f))

        W_vals[i] = W
        E_vals[i] = E
        if E > 0.0:
            alpha_vals[i] = W / E
        else:
            alpha_vals[i] = float("inf") if W > 0.0 else 0.0
        weil_pos[i] = bool(cert.positive)
        bridge_pos[i] = bool(alpha_vals[i] > 0.0)

    finite_alpha = alpha_vals[np.isfinite(alpha_vals)]
    if finite_alpha.size > 0:
        alpha_min = float(finite_alpha.min())
        alpha_max = float(finite_alpha.max())
    else:
        alpha_min = float("nan")
        alpha_max = float("nan")

    return WeilTNFRBridgeCertificate(
        sigmas=sigma_array,
        weil_functional=W_vals,
        tnfr_lyapunov_energy=E_vals,
        alpha=alpha_vals,
        weil_positive=weil_pos,
        bridge_positive=bridge_pos,
        weil_positive_all=bool(weil_pos.all()),
        bridge_positive_all=bool(bridge_pos.all()),
        alpha_min=alpha_min,
        alpha_max=alpha_max,
    )