TNFR Logo
TheoryLearnSoftwareResearch

On this page

TNFR

Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

About
  • Project history
  • Editorial policy
  • Contact
Resources
  • GitHub
  • PyPI
  • DOI · Zenodo
Legal
  • MIT License
  • Citation
© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
.pre-commit-config.yaml.semgrep.yaml.zenodo.jsonARCHITECTURE.mdbandit.yamlCHANGELOG.mdCITATION.cffCONTRIBUTING.mdEMERGENT_CANON_AUDIT.mdEMERGENT_DERIVATION_PLAN.mdLICENSE.mdMakefileMANIFEST.inpyproject.tomlpyrightconfig.jsonPYTORCH_CUDA_INTEGRATION.mdREADME.mdSECURITY.mdTESTING.mdTNFR_Website_Content_Brief.md
FILE: src/tnfr/sense.py

sense.py

Sense calculations and structural operator symbol vector analysis.

This module implements the sense index (Si) calculation and related vector operations for analyzing the distribution of structural operator applications.

The 'glyph rose' visualization represents the distribution of structural operator symbols in a circular format, where each glyph corresponds to an angle representing the associated structural operator.

Source Code

python
"""Sense calculations and structural operator symbol vector analysis.

This module implements the sense index (Si) calculation and related vector
operations for analyzing the distribution of structural operator applications.

The 'glyph rose' visualization represents the distribution of structural operator
symbols in a circular format, where each glyph corresponds to an angle representing
the associated structural operator.
"""

from __future__ import annotations

import math
from collections import Counter
from collections.abc import Iterable, Iterator, Mapping
from itertools import tee
from typing import Any, Callable, TypeVar

import networkx as nx

from .alias import get_attr
from .config.constants import ANGLE_MAP, GLYPHS_CANONICAL
from .constants import get_graph_param
from .constants.aliases import ALIAS_EPI, ALIAS_SI
from .errors import TNFRValueError
from .glyph_history import append_metric, count_glyphs, ensure_history
from .glyph_runtime import last_glyph
from .mathematics.unified_numerical import np
from .types import NodeId, SigmaVector, TNFRGraph
from .utils import CallbackEvent, callback_manager, clamp01, kahan_sum_nd

# -------------------------
# Canon: circular glyph order and angles
# -------------------------

GLYPH_UNITS: dict[str, complex] = {
    g: complex(math.cos(a), math.sin(a)) for g, a in ANGLE_MAP.items()
}

__all__ = (
    "GLYPH_UNITS",
    "glyph_angle",
    "glyph_unit",
    "sigma_vector_node",
    "sigma_vector",
    "sigma_vector_from_graph",
    "push_sigma_snapshot",
    "register_sigma_callback",
    "sigma_rose",
)

# -------------------------
# Basic utilities
# -------------------------

T = TypeVar("T")


def _resolve_glyph(g: str, mapping: Mapping[str, T]) -> T:
    """Return ``mapping[g]`` or raise ``KeyError`` with a standard message."""

    try:
        return mapping[g]
    except KeyError as e:  # pragma: no cover - small helper
        raise KeyError(f"Unknown glyph: {g}") from e


def glyph_angle(g: str) -> float:
    """Return the canonical angle for structural operator symbol ``g``.

    Each structural operator symbol (glyph) is mapped to a specific angle
    in the circular representation used for sense vector calculations.
    """

    return float(_resolve_glyph(g, ANGLE_MAP))


def glyph_unit(g: str) -> complex:
    """Return the unit vector for structural operator symbol ``g``.

    Each structural operator symbol (glyph) corresponds to a unit vector
    in the complex plane, used for aggregating operator applications.
    """

    return _resolve_glyph(g, GLYPH_UNITS)


MODE_FUNCS: dict[str, Callable[[Mapping[str, Any]], float]] = {
    "Si": lambda nd: clamp01(get_attr(nd, ALIAS_SI, 0.5)),
    "EPI": lambda nd: max(0.0, get_attr(nd, ALIAS_EPI, 0.0)),
}


def _weight(nd: Mapping[str, Any], mode: str) -> float:
    return MODE_FUNCS.get(mode, lambda _: 1.0)(nd)


def _node_weight(
    nd: Mapping[str, Any], weight_mode: str
) -> tuple[str, float, complex] | None:
    """Return ``(glyph, weight, weighted_unit)`` or ``None`` if no glyph."""
    g = last_glyph(nd)
    if not g:
        return None
    w = _weight(nd, weight_mode)
    z = glyph_unit(g) * w  # precompute weighted unit vector
    return g, w, z


def _sigma_cfg(G: TNFRGraph) -> dict[str, Any]:
    return get_graph_param(G, "SIGMA", dict)


def _to_complex(val: complex | float | int) -> complex:
    """Return ``val`` as complex, promoting real numbers."""

    if isinstance(val, complex):
        return val
    if isinstance(val, (int, float)):
        return complex(val, 0.0)
    raise TypeError("values must be an iterable of real or complex numbers")


def _empty_sigma(fallback_angle: float) -> SigmaVector:
    """Return an empty σ-vector with ``fallback_angle``.

    Helps centralise the default structure returned when no values are
    available for σ calculations.
    """

    return {
        "x": 0.0,
        "y": 0.0,
        "mag": 0.0,
        "angle": float(fallback_angle),
        "n": 0,
    }


# -------------------------
# σ per node and global σ
# -------------------------


def _sigma_from_iterable(
    values: Iterable[complex | float | int] | complex | float | int,
    fallback_angle: float = 0.0,
) -> SigmaVector:
    """Normalise vectors in the σ-plane.

    ``values`` may contain complex or real numbers; real inputs are promoted to
    complex with zero imaginary part. The returned dictionary includes the
    number of processed values under the ``"n"`` key.
    """

    if isinstance(values, Iterable) and not isinstance(
        values, (str, bytes, bytearray, Mapping)
    ):
        iterator = iter(values)
    else:
        iterator = iter((values,))

    if np is not None:
        iterator, np_iter = tee(iterator)
        arr = np.fromiter((_to_complex(v) for v in np_iter), dtype=np.complex128)
        cnt = int(arr.size)
        if cnt == 0:
            return _empty_sigma(fallback_angle)
        x = float(np.mean(arr.real))
        y = float(np.mean(arr.imag))
        mag = float(np.hypot(x, y))
        ang = float(np.arctan2(y, x)) if mag > 0 else float(fallback_angle)
        return {
            "x": float(x),
            "y": float(y),
            "mag": float(mag),
            "angle": float(ang),
            "n": int(cnt),
        }
    cnt = 0

    def pair_iter() -> Iterator[tuple[float, float]]:
        nonlocal cnt
        for val in iterator:
            z = _to_complex(val)
            cnt += 1
            yield (z.real, z.imag)

    sum_x, sum_y = kahan_sum_nd(pair_iter(), dims=2)

    if cnt == 0:
        return _empty_sigma(fallback_angle)

    x = sum_x / cnt
    y = sum_y / cnt
    mag = math.hypot(x, y)
    ang = math.atan2(y, x) if mag > 0 else float(fallback_angle)
    return {
        "x": float(x),
        "y": float(y),
        "mag": float(mag),
        "angle": float(ang),
        "n": int(cnt),
    }


def _ema_update(prev: SigmaVector, current: SigmaVector, alpha: float) -> SigmaVector:
    """Exponential moving average update for σ vectors."""
    x = (1 - alpha) * prev["x"] + alpha * current["x"]
    y = (1 - alpha) * prev["y"] + alpha * current["y"]
    mag = math.hypot(x, y)
    ang = math.atan2(y, x)
    return {
        "x": float(x),
        "y": float(y),
        "mag": float(mag),
        "angle": float(ang),
        "n": int(current["n"]),
    }


def _sigma_from_nodes(
    nodes: Iterable[Mapping[str, Any]],
    weight_mode: str,
    fallback_angle: float = 0.0,
) -> tuple[SigmaVector, list[tuple[str, float, complex]]]:
    """Aggregate weighted glyph vectors for ``nodes``.

    Returns the aggregated σ vector and the list of ``(glyph, weight, vector)``
    triples used in the calculation.
    """

    nws = [nw for nd in nodes if (nw := _node_weight(nd, weight_mode))]
    sv = _sigma_from_iterable((nw[2] for nw in nws), fallback_angle)
    return sv, nws


def sigma_vector_node(
    G: TNFRGraph, n: NodeId, weight_mode: str | None = None
) -> SigmaVector | None:
    """Return the σ vector for node ``n`` using the configured weighting."""

    cfg = _sigma_cfg(G)
    nd = G.nodes[n]
    weight_mode = weight_mode or cfg.get("weight", "Si")
    sv, nws = _sigma_from_nodes([nd], weight_mode)
    if not nws:
        return None
    g, w, _ = nws[0]
    if sv["mag"] == 0:
        sv["angle"] = glyph_angle(g)
    sv["glyph"] = g
    sv["w"] = float(w)
    return sv


def sigma_vector(dist: Mapping[str, float]) -> SigmaVector:
    """Compute Σ⃗ from a glyph distribution.

    ``dist`` may contain raw counts or proportions. All ``(glyph, weight)``
    pairs are converted to vectors and passed to :func:`_sigma_from_iterable`.
    The resulting vector includes the number of processed pairs under ``n``.
    """

    vectors = (glyph_unit(g) * float(w) for g, w in dist.items())
    return _sigma_from_iterable(vectors)


def sigma_vector_from_graph(
    G: TNFRGraph, weight_mode: str | None = None
) -> SigmaVector:
    """Global vector in the σ sense plane for a graph.

    Parameters
    ----------
    G:
        NetworkX graph with per-node states.
    weight_mode:
        How to weight each node ("Si", "EPI" or ``None`` for unit weight).

    Returns
    -------
    dict[str, float]
        Cartesian components, magnitude and angle of the average vector.
    """

    if not isinstance(G, nx.Graph):
        raise TypeError("sigma_vector_from_graph requires a networkx.Graph")

    cfg = _sigma_cfg(G)
    weight_mode = weight_mode or cfg.get("weight", "Si")
    sv, _ = _sigma_from_nodes((nd for _, nd in G.nodes(data=True)), weight_mode)
    return sv


# -------------------------
# History / series
# -------------------------


def push_sigma_snapshot(G: TNFRGraph, t: float | None = None) -> None:
    """Record a global σ snapshot (and optional per-node traces) for ``G``."""

    cfg = _sigma_cfg(G)
    if not cfg.get("enabled", True):
        return

    # Local history cache to avoid repeated lookups
    hist = ensure_history(G)
    key = cfg.get("history_key", "sigma_global")

    weight_mode = cfg.get("weight", "Si")
    sv = sigma_vector_from_graph(G, weight_mode)

    # Optional exponential smoothing (EMA)
    alpha = float(cfg.get("smooth", 0.0))
    if alpha > 0 and hist.get(key):
        sv = _ema_update(hist[key][-1], sv, alpha)

    current_t = float(G.graph.get("_t", 0.0) if t is None else t)
    sv["t"] = current_t

    append_metric(hist, key, sv)

    # Glyph count per step (useful for the glyph rose)
    counts = count_glyphs(G, last_only=True)
    append_metric(hist, "sigma_counts", {"t": current_t, **counts})

    # Optional per-node trajectory
    if cfg.get("per_node", False):
        per = hist.setdefault("sigma_per_node", {})
        for n, nd in G.nodes(data=True):
            g = last_glyph(nd)
            if not g:
                continue
            d = per.setdefault(n, [])
            d.append({"t": current_t, "g": g, "angle": glyph_angle(g)})


# -------------------------
# Register as an automatic callback (after_step)
# -------------------------


def register_sigma_callback(G: TNFRGraph) -> None:
    """Attach :func:`push_sigma_snapshot` to the ``AFTER_STEP`` callback bus."""

    callback_manager.register_callback(
        G,
        event=CallbackEvent.AFTER_STEP.value,
        func=push_sigma_snapshot,
        name="sigma_snapshot",
    )


def sigma_rose(G: TNFRGraph, steps: int | None = None) -> dict[str, int]:
    """Histogram of glyphs in the last ``steps`` steps (or all)."""
    hist = ensure_history(G)
    counts = hist.get("sigma_counts", [])
    if not counts:
        return {g: 0 for g in GLYPHS_CANONICAL}
    if steps is not None:
        steps = int(steps)
        if steps < 0:
            raise TNFRValueError(
                "steps must be non-negative",
                context={"steps": steps},
                suggestion="Provide a non-negative integer for steps.",
            )
        rows = counts if steps >= len(counts) else counts[-steps:]  # noqa: E203
    else:
        rows = counts
    counter: Counter[str] = Counter()
    for row in rows:
        for k, v in row.items():
            if k != "t":
                counter[k] += int(v)
    return {g: int(counter.get(g, 0)) for g in GLYPHS_CANONICAL}