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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: src/tnfr/utils/cache.pyi

cache.pyi

Source Code

python
from __future__ import annotations

import logging
import threading
from collections import defaultdict
from collections.abc import (
    Callable,
    Hashable,
    Iterable,
    Iterator,
    Mapping,
    MutableMapping,
)
from dataclasses import dataclass
from typing import Any, ClassVar, ContextManager, Generic, TypeVar

import networkx as nx
from cachetools import LRUCache

from ..types import GraphLike, NodeId, TimingContext, TNFRGraph

K = TypeVar("K", bound=Hashable)
V = TypeVar("V")
T = TypeVar("T")

class SecurityError(RuntimeError):
    """Raised when a cache payload fails hardened validation."""

    ...

@dataclass(frozen=True)
class CacheCapacityConfig:
    default_capacity: int | None
    overrides: dict[str, int | None]

@dataclass(frozen=True)
class CacheStatistics:
    hits: int = ...
    misses: int = ...
    evictions: int = ...
    total_time: float = ...
    timings: int = ...

    def merge(self, other: CacheStatistics) -> CacheStatistics: ...

class CacheLayer:
    def load(self, name: str) -> Any: ...
    def store(self, name: str, value: Any) -> None: ...
    def delete(self, name: str) -> None: ...
    def clear(self) -> None: ...
    def close(self) -> None: ...

class MappingCacheLayer(CacheLayer):
    def __init__(self, storage: MutableMapping[str, Any] | None = ...) -> None: ...

class ShelveCacheLayer(CacheLayer):
    def __init__(
        self,
        path: str,
        *,
        flag: str = ...,
        protocol: int | None = ...,
        writeback: bool = ...,
    ) -> None: ...

class RedisCacheLayer(CacheLayer):
    def __init__(self, client: Any | None = ..., *, namespace: str = ...) -> None: ...

class CacheManager:
    _MISSING: ClassVar[object]

    def __init__(
        self,
        storage: MutableMapping[str, Any] | None = ...,
        *,
        default_capacity: int | None = ...,
        overrides: Mapping[str, int | None] | None = ...,
        layers: Iterable[CacheLayer] | None = ...,
    ) -> None: ...
    @staticmethod
    def _normalise_capacity(value: int | None) -> int | None: ...
    def register(
        self,
        name: str,
        factory: Callable[[], Any],
        *,
        lock_factory: Callable[[], threading.Lock | threading.RLock] | None = ...,
        reset: Callable[[Any], Any] | None = ...,
        create: bool = ...,
        encoder: Callable[[Any], Any] | None = ...,
        decoder: Callable[[Any], Any] | None = ...,
    ) -> None: ...
    def configure(
        self,
        *,
        default_capacity: int | None | object = ...,
        overrides: Mapping[str, int | None] | None = ...,
        replace_overrides: bool = ...,
    ) -> None: ...
    def configure_from_mapping(self, config: Mapping[str, Any]) -> None: ...
    def export_config(self) -> CacheCapacityConfig: ...
    def get_capacity(
        self,
        name: str,
        *,
        requested: int | None = ...,
        fallback: int | None = ...,
        use_default: bool = ...,
    ) -> int | None: ...
    def has_override(self, name: str) -> bool: ...
    def get_lock(self, name: str) -> threading.Lock | threading.RLock: ...
    def names(self) -> Iterator[str]: ...
    def get(self, name: str, *, create: bool = ...) -> Any: ...
    def peek(self, name: str) -> Any: ...
    def store(self, name: str, value: Any) -> None: ...
    def update(
        self,
        name: str,
        updater: Callable[[Any], Any],
        *,
        create: bool = ...,
    ) -> Any: ...
    def clear(self, name: str | None = ...) -> None: ...
    def increment_hit(
        self,
        name: str,
        *,
        amount: int = ...,
        duration: float | None = ...,
    ) -> None: ...
    def increment_miss(
        self,
        name: str,
        *,
        amount: int = ...,
        duration: float | None = ...,
    ) -> None: ...
    def increment_eviction(self, name: str, *, amount: int = ...) -> None: ...
    def record_timing(self, name: str, duration: float) -> None: ...
    def timer(self, name: str) -> TimingContext: ...
    def get_metrics(self, name: str) -> CacheStatistics: ...
    def iter_metrics(self) -> Iterator[tuple[str, CacheStatistics]]: ...
    def aggregate_metrics(self) -> CacheStatistics: ...
    def register_metrics_publisher(
        self, publisher: Callable[[str, CacheStatistics], None]
    ) -> None: ...
    def publish_metrics(
        self,
        *,
        publisher: Callable[[str, CacheStatistics], None] | None = ...,
    ) -> None: ...
    def log_metrics(self, logger: logging.Logger, *, level: int = ...) -> None: ...

class InstrumentedLRUCache(MutableMapping[K, V], Generic[K, V]):
    _MISSING: ClassVar[object]

    def __init__(
        self,
        maxsize: int,
        *,
        manager: CacheManager | None = ...,
        metrics_key: str | None = ...,
        telemetry_callbacks: (
            Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None
        ) = ...,
        eviction_callbacks: (
            Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None
        ) = ...,
        locks: MutableMapping[K, Any] | None = ...,
        getsizeof: Callable[[V], int] | None = ...,
        count_overwrite_hit: bool = ...,
    ) -> None: ...
    @property
    def telemetry_callbacks(self) -> tuple[Callable[[K, V], None], ...]: ...
    @property
    def eviction_callbacks(self) -> tuple[Callable[[K, V], None], ...]: ...
    def set_telemetry_callbacks(
        self,
        callbacks: Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None,
        *,
        append: bool = ...,
    ) -> None: ...
    def set_eviction_callbacks(
        self,
        callbacks: Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None,
        *,
        append: bool = ...,
    ) -> None: ...
    def pop(self, key: K, default: Any = ...) -> V: ...
    def popitem(self) -> tuple[K, V]: ...
    def clear(self) -> None: ...
    @property
    def maxsize(self) -> int: ...
    @property
    def currsize(self) -> int: ...
    def get(self, key: K, default: V | None = ...) -> V | None: ...

class ManagedLRUCache(LRUCache[K, V], Generic[K, V]):
    def __init__(
        self,
        maxsize: int,
        *,
        manager: CacheManager | None = ...,
        metrics_key: str | None = ...,
        eviction_callbacks: (
            Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None
        ) = ...,
        telemetry_callbacks: (
            Iterable[Callable[[K, V], None]] | Callable[[K, V], None] | None
        ) = ...,
        locks: MutableMapping[K, Any] | None = ...,
    ) -> None: ...
    def popitem(self) -> tuple[K, V]: ...

def prune_lock_mapping(
    cache: Mapping[K, Any] | MutableMapping[K, Any] | None,
    locks: MutableMapping[K, Any] | None,
) -> None: ...

__all__ = (
    "CacheLayer",
    "CacheManager",
    "CacheCapacityConfig",
    "CacheStatistics",
    "InstrumentedLRUCache",
    "ManagedLRUCache",
    "MappingCacheLayer",
    "RedisCacheLayer",
    "ShelveCacheLayer",
    "prune_lock_mapping",
    "EdgeCacheManager",
    "NODE_SET_CHECKSUM_KEY",
    "cached_node_list",
    "cached_nodes_and_A",
    "clear_node_repr_cache",
    "edge_version_cache",
    "edge_version_update",
    "ensure_node_index_map",
    "ensure_node_offset_map",
    "get_graph_version",
    "increment_edge_version",
    "increment_graph_version",
    "node_set_checksum",
    "stable_json",
    "configure_graph_cache_limits",
    "DNFR_PREP_STATE_KEY",
    "DnfrCache",
    "DnfrPrepState",
    "new_dnfr_cache",
    "build_cache_manager",
    "configure_global_cache_layers",
    "reset_global_cache_manager",
    "_GRAPH_CACHE_LAYERS_KEY",
    "_SeedHashCache",
    "ScopedCounterCache",
)

NODE_SET_CHECKSUM_KEY: str
_GRAPH_CACHE_LAYERS_KEY: str
DNFR_PREP_STATE_KEY: str

class DnfrCache:
    idx: dict[Any, int]
    theta: list[float]
    epi: list[float]
    vf: list[float]
    cos_theta: list[float]
    sin_theta: list[float]
    neighbor_x: list[float]
    neighbor_y: list[float]
    neighbor_epi_sum: list[float]
    neighbor_vf_sum: list[float]
    neighbor_count: list[float]
    neighbor_deg_sum: list[float] | None
    th_bar: list[float] | None
    epi_bar: list[float] | None
    vf_bar: list[float] | None
    deg_bar: list[float] | None
    degs: dict[Any, float] | None
    deg_list: list[float] | None
    theta_np: Any | None
    epi_np: Any | None
    vf_np: Any | None
    cos_theta_np: Any | None
    sin_theta_np: Any | None
    deg_array: Any | None
    edge_src: Any | None
    edge_dst: Any | None
    checksum: Any | None
    neighbor_x_np: Any | None
    neighbor_y_np: Any | None
    neighbor_epi_sum_np: Any | None
    neighbor_vf_sum_np: Any | None
    neighbor_count_np: Any | None
    neighbor_deg_sum_np: Any | None
    th_bar_np: Any | None
    epi_bar_np: Any | None
    vf_bar_np: Any | None
    deg_bar_np: Any | None
    grad_phase_np: Any | None
    grad_epi_np: Any | None
    grad_vf_np: Any | None
    grad_topo_np: Any | None
    grad_total_np: Any | None
    dense_components_np: Any | None
    dense_accum_np: Any | None
    dense_degree_np: Any | None
    neighbor_accum_np: Any | None
    neighbor_inv_count_np: Any | None
    neighbor_cos_avg_np: Any | None
    neighbor_sin_avg_np: Any | None
    neighbor_mean_tmp_np: Any | None
    neighbor_mean_length_np: Any | None
    edge_signature: Any | None
    neighbor_accum_signature: Any | None
    neighbor_edge_values_np: Any | None

class EdgeCacheState:
    cache: MutableMapping[Hashable, Any]
    locks: defaultdict[Hashable, threading.RLock]
    max_entries: int | None
    dirty: bool

def new_dnfr_cache() -> DnfrCache: ...

class DnfrPrepState:
    cache: DnfrCache
    cache_lock: threading.RLock
    vector_lock: threading.RLock

class EdgeCacheManager:
    _STATE_KEY: str

    def __init__(self, graph: MutableMapping[str, Any]) -> None: ...
    def record_hit(self) -> None: ...
    def record_miss(self, *, track_metrics: bool = ...) -> None: ...
    def record_eviction(self, *, track_metrics: bool = ...) -> None: ...
    def timer(self) -> TimingContext: ...
    def _default_state(self) -> EdgeCacheState: ...
    def resolve_max_entries(self, max_entries: int | None | object) -> int | None: ...
    def _build_state(self, max_entries: int | None) -> EdgeCacheState: ...
    def _ensure_state(
        self, state: EdgeCacheState | None, max_entries: int | None | object
    ) -> EdgeCacheState: ...
    def _reset_state(self, state: EdgeCacheState | None) -> EdgeCacheState: ...
    def get_cache(
        self,
        max_entries: int | None | object,
        *,
        create: bool = ...,
    ) -> EdgeCacheState | None: ...
    def flush_state(self, state: EdgeCacheState) -> None: ...
    def clear(self) -> None: ...

def get_graph_version(graph: Any, key: str, default: int = ...) -> int: ...
def increment_graph_version(graph: Any, key: str) -> int: ...
def stable_json(obj: Any) -> str: ...
def clear_node_repr_cache() -> None: ...
def configure_global_cache_layers(
    *,
    shelve: Mapping[str, Any] | None = ...,
    redis: Mapping[str, Any] | None = ...,
    replace: bool = ...,
) -> None: ...
def node_set_checksum(
    G: nx.Graph,
    nodes: Iterable[Any] | None = ...,
    *,
    presorted: bool = ...,
    store: bool = ...,
) -> str: ...
def reset_global_cache_manager() -> None: ...
def build_cache_manager(
    *,
    graph: MutableMapping[str, Any] | None = ...,
    storage: MutableMapping[str, Any] | None = ...,
    default_capacity: int | None = ...,
    overrides: Mapping[str, int | None] | None = ...,
) -> CacheManager: ...
def cached_node_list(G: nx.Graph) -> tuple[Any, ...]: ...
def ensure_node_index_map(G: TNFRGraph) -> dict[NodeId, int]: ...
def ensure_node_offset_map(G: TNFRGraph) -> dict[NodeId, int]: ...
def configure_graph_cache_limits(
    G: GraphLike | TNFRGraph | MutableMapping[str, Any],
    *,
    default_capacity: int | None | object = CacheManager._MISSING,
    overrides: Mapping[str, int | None] | None = ...,
    replace_overrides: bool = ...,
) -> CacheCapacityConfig: ...
def increment_edge_version(G: Any) -> None: ...
def edge_version_cache(
    G: Any,
    key: Hashable,
    builder: Callable[[], T],
    *,
    max_entries: int | None | object = CacheManager._MISSING,
) -> T: ...
def cached_nodes_and_A(
    G: nx.Graph,
    *,
    cache_size: int | None = ...,
    require_numpy: bool = ...,
    prefer_sparse: bool = ...,
    nodes: tuple[Any, ...] | None = ...,
) -> tuple[tuple[Any, ...], Any]: ...
def edge_version_update(G: TNFRGraph) -> ContextManager[None]: ...

class _SeedCacheState:
    cache: InstrumentedLRUCache[tuple[int, int], int] | None
    maxsize: int

class _CounterState(Generic[K]):
    cache: InstrumentedLRUCache[K, int]
    locks: dict[K, threading.RLock]
    max_entries: int

class _SeedHashCache(MutableMapping[tuple[int, int], int]):
    _state_key: str

    def __init__(
        self,
        *,
        manager: CacheManager | None = ...,
        state_key: str = ...,
        default_maxsize: int = ...,
    ) -> None: ...
    def configure(self, maxsize: int) -> None: ...
    def __getitem__(self, key: tuple[int, int]) -> int: ...
    def __setitem__(self, key: tuple[int, int], value: int) -> None: ...
    def __delitem__(self, key: tuple[int, int]) -> None: ...
    def __iter__(self) -> Iterator[tuple[int, int]]: ...
    def __len__(self) -> int: ...
    def clear(self) -> None: ...
    @property
    def maxsize(self) -> int: ...
    @property
    def enabled(self) -> bool: ...
    @property
    def data(self) -> InstrumentedLRUCache[tuple[int, int], int] | None: ...

class ScopedCounterCache(Generic[K]):
    _state_key: str

    def __init__(
        self,
        name: str,
        max_entries: int | None = ...,
        *,
        manager: CacheManager | None = ...,
        default_max_entries: int = ...,
    ) -> None: ...
    def configure(
        self, *, force: bool = ..., max_entries: int | None = ...
    ) -> None: ...
    def clear(self) -> None: ...
    def bump(self, key: K) -> int: ...
    def __len__(self) -> int: ...
    @property
    def lock(self) -> threading.Lock | threading.RLock: ...
    @property
    def max_entries(self) -> int: ...
    @property
    def cache(self) -> InstrumentedLRUCache[K, int]: ...
    @property
    def locks(self) -> dict[K, threading.RLock]: ...

# Internal symbols used by utils.__init__.py
_GRAPH_CACHE_MANAGER_KEY: str

def _graph_cache_manager(graph: MutableMapping[str, Any]) -> CacheManager: ...