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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: tests/physics/test_conservation_gauge_unification.py

test_conservation_gauge_unification.py

Tests for TNFR Conservation-Gauge Unification.

Validates the central theoretical result:

text
Grammar (U1-U6) → Symmetry (Translation × U(1))
    → Conservation (H = E, Q) → Gauge (Ψ, A, F) — UNIFIED

All four arise as different projections of the TNFR action functional:

text
S_TNFR = Σ_n Δt · Σ_i [½(J_φ² + J_ΔNFR²) − ½(Φ_s² + |∇φ|² + K_φ²)]

Tests verify:

  1. Grammar symmetry mapping covers all 6 rules
  2. Action-energy identity: H_variational ≡ E_conservation (rel_err < 1e-10)
  3. Noether-gauge decomposition: Q, E, S_YM, S_matter are finite
  4. Gauge-conservation coupling: energy IS gauge-invariant, charge is NOT
  5. Symplectic-gauge compatibility: ω preserved under U(1) rotation
  6. Full unification pipeline produces coherent result
  7. Multi-topology validation (WS, BA, Grid)
  8. Conjugate pair structure: geometric (K_φ, J_φ) + potential (Φ_s, J_ΔNFR)
  9. Sector energy decomposition: E_geo + E_pot > 0
  10. Gauge charge sensitivity: ΔQ > 0 under gauge rotation
  11. Summary dict contains all required keys
  12. Seed reproducibility

TIER: CORE PHYSICS — unification of conservation and gauge sectors.

Source Code

python
"""Tests for TNFR Conservation-Gauge Unification.

Validates the central theoretical result:

    Grammar (U1-U6) → Symmetry (Translation × U(1))
        → Conservation (H = E, Q) → Gauge (Ψ, A, F) — UNIFIED

All four arise as different projections of the TNFR action functional:

    S_TNFR = Σ_n Δt · Σ_i [½(J_φ² + J_ΔNFR²) − ½(Φ_s² + |∇φ|² + K_φ²)]

Tests verify:
 1.  Grammar symmetry mapping covers all 6 rules
 2.  Action-energy identity: H_variational ≡ E_conservation (rel_err < 1e-10)
 3.  Noether-gauge decomposition: Q, E, S_YM, S_matter are finite
 4.  Gauge-conservation coupling: energy IS gauge-invariant, charge is NOT
 5.  Symplectic-gauge compatibility: ω preserved under U(1) rotation
 6.  Full unification pipeline produces coherent result
 7.  Multi-topology validation (WS, BA, Grid)
 8.  Conjugate pair structure: geometric (K_φ, J_φ) + potential (Φ_s, J_ΔNFR)
 9.  Sector energy decomposition: E_geo + E_pot > 0
10.  Gauge charge sensitivity: ΔQ > 0 under gauge rotation
11.  Summary dict contains all required keys
12.  Seed reproducibility

TIER: CORE PHYSICS — unification of conservation and gauge sectors.
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np
import pytest

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.physics.conservation_gauge_unification import (
    ActionEnergyConsistency,
    ConservationGaugeUnification,
    GaugeConservationCoupling,
    GrammarSymmetryMapping,
    NoetherGaugeDecomposition,
    SymplecticGaugeCompatibility,
    compute_gauge_conservation_coupling,
    compute_grammar_symmetry_mapping,
    compute_noether_gauge_decomposition,
    run_conservation_gauge_unification,
    verify_action_energy_consistency,
    verify_symplectic_gauge_compatibility,
)

# ---------------------------------------------------------------------------
# Fixtures
# ---------------------------------------------------------------------------


def _make_tnfr_graph(
    n: int = 30,
    topology: str = "watts_strogatz",
    seed: int = 42,
) -> nx.Graph:
    """Build a TNFR-ready graph with canonical attributes."""
    rng = np.random.default_rng(seed)

    if topology == "watts_strogatz":
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)
    elif topology == "barabasi_albert":
        G = nx.barabasi_albert_graph(n, 3, seed=seed)
    elif topology == "grid":
        side = int(math.sqrt(n))
        G = nx.grid_2d_graph(side, side)
    else:
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)

    inject_defaults(G)

    for node in G.nodes():
        G.nodes[node]["phase"] = rng.uniform(0, 2 * math.pi)
        G.nodes[node]["frequency"] = rng.uniform(0.1, 1.0)
        G.nodes[node]["delta_nfr"] = rng.uniform(-0.5, 0.5)
        G.nodes[node]["EPI"] = f"epi_{node}"

    return G


@pytest.fixture
def ws_graph():
    return _make_tnfr_graph(30, "watts_strogatz", seed=42)


@pytest.fixture
def ba_graph():
    return _make_tnfr_graph(30, "barabasi_albert", seed=42)


@pytest.fixture
def grid_graph():
    return _make_tnfr_graph(25, "grid", seed=42)


# ---------------------------------------------------------------------------
# 1. Grammar Symmetry Mapping
# ---------------------------------------------------------------------------


class TestGrammarSymmetryMapping:
    """Grammar rules U1-U6 map to symmetries and conservation laws."""

    def test_covers_all_six_rules(self, ws_graph):
        """Mapping must return exactly 6 entries, one per U-rule."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        assert len(mappings) == 6
        rules = [m.rule for m in mappings]
        assert rules == ["U1", "U2", "U3", "U4", "U5", "U6"]

    def test_all_entries_are_dataclass(self, ws_graph):
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        for m in mappings:
            assert isinstance(m, GrammarSymmetryMapping)
            assert isinstance(m.rule, str)
            assert isinstance(m.symmetry_type, str)
            assert isinstance(m.conservation_law, str)
            assert isinstance(m.variational_role, str)
            assert isinstance(m.is_satisfied, bool)
            assert isinstance(m.diagnostic_value, float)

    def test_symmetry_types_are_distinct(self, ws_graph):
        """Each grammar rule maps to a different symmetry type."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        types = [m.symmetry_type for m in mappings]
        expected = {
            "boundary",
            "stability",
            "gauge",
            "topological",
            "hierarchical",
            "confinement",
        }
        assert set(types) == expected

    def test_u1_boundary_satisfied(self, ws_graph):
        """U1 (initiation/closure) is satisfied for any existing graph."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        u1 = [m for m in mappings if m.rule == "U1"][0]
        assert u1.is_satisfied
        assert u1.diagnostic_value == 0.0

    def test_u2_stability_finite_energy(self, ws_graph):
        """U2 is satisfied when energy functional is finite."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        u2 = [m for m in mappings if m.rule == "U2"][0]
        assert u2.is_satisfied

    def test_u6_confinement_check(self, ws_graph):
        """U6 checks structural potential confinement < φ."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        u6 = [m for m in mappings if m.rule == "U6"][0]
        # Well-initialised graph should have confined Φ_s
        assert isinstance(u6.is_satisfied, bool)

    def test_diagnostic_values_nonnegative(self, ws_graph):
        """All diagnostic values are ≥ 0."""
        mappings = compute_grammar_symmetry_mapping(ws_graph)
        for m in mappings:
            assert m.diagnostic_value >= 0.0


# ---------------------------------------------------------------------------
# 2. Action-Energy Consistency: H_var ≡ E_cons
# ---------------------------------------------------------------------------


class TestActionEnergyConsistency:
    """The variational Hamiltonian equals the conservation energy functional."""

    def test_exact_identity(self, ws_graph):
        """H_variational = E_conservation to machine precision."""
        result = verify_action_energy_consistency(ws_graph)
        assert isinstance(result, ActionEnergyConsistency)
        assert result.relative_error < 1e-10
        assert result.is_consistent

    def test_hamiltonian_equals_T_plus_V(self, ws_graph):
        """H = T + V (energy partitioning)."""
        result = verify_action_energy_consistency(ws_graph)
        H = result.hamiltonian_variational
        T_plus_V = result.total_kinetic + result.total_potential
        assert abs(H - T_plus_V) / max(abs(H), 1e-15) < 1e-12

    def test_kinetic_fraction_bounded(self, ws_graph):
        """T/H must be in [0, 1]."""
        result = verify_action_energy_consistency(ws_graph)
        assert 0.0 <= result.kinetic_fraction <= 1.0

    def test_energy_positive(self, ws_graph):
        """Total energy H > 0 for a non-trivial graph."""
        result = verify_action_energy_consistency(ws_graph)
        assert result.hamiltonian_variational > 0.0

    def test_consistency_across_topologies(self, ws_graph, ba_graph, grid_graph):
        """H = E for WS, BA, and grid topologies."""
        for G in [ws_graph, ba_graph, grid_graph]:
            result = verify_action_energy_consistency(G)
            assert result.is_consistent, (
                f"H={result.hamiltonian_variational:.6f} != "
                f"E={result.energy_conservation:.6f}"
            )

    def test_custom_tolerance(self, ws_graph):
        """Respects custom tolerance parameter."""
        result = verify_action_energy_consistency(ws_graph, tolerance=1e-20)
        # rel_err is ~1e-16, so with tolerance 1e-20 it should still pass
        # for well-implemented identity
        assert isinstance(result.is_consistent, bool)


# ---------------------------------------------------------------------------
# 3. Noether-Gauge Decomposition
# ---------------------------------------------------------------------------


class TestNoetherGaugeDecomposition:
    """Symmetry decomposes into external (Noether) and internal (gauge) sectors."""

    def test_returns_correct_type(self, ws_graph):
        result = compute_noether_gauge_decomposition(ws_graph)
        assert isinstance(result, NoetherGaugeDecomposition)

    def test_energy_finite_positive(self, ws_graph):
        """Gauge-invariant energy E > 0 and finite."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert np.isfinite(result.energy_functional)
        assert result.energy_functional > 0.0

    def test_gauge_invariant_energy_equals_functional(self, ws_graph):
        """E is gauge-invariant → gauge_invariant_energy = energy_functional."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert result.gauge_invariant_energy == result.energy_functional

    def test_noether_charge_finite(self, ws_graph):
        """Noether charge Q is finite."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert np.isfinite(result.noether_charge)

    def test_yang_mills_nonnegative(self, ws_graph):
        """S_YM ≥ 0 (gauge field action is positive semi-definite)."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert result.yang_mills_action >= -1e-12

    def test_matter_action_nonnegative(self, ws_graph):
        """S_matter = Σ|DΨ|² ≥ 0."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert result.matter_action >= -1e-12

    def test_decomposition_quality_bounded(self, ws_graph):
        """Quality metric in [0, 1]."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert 0.0 <= result.decomposition_quality <= 1.0

    def test_noether_gauge_ratio_nonnegative(self, ws_graph):
        """|Q|/E ≥ 0."""
        result = compute_noether_gauge_decomposition(ws_graph)
        assert result.noether_gauge_ratio >= 0.0

    def test_multi_topology(self, ws_graph, ba_graph, grid_graph):
        """Decomposition works on all standard topologies."""
        for G in [ws_graph, ba_graph, grid_graph]:
            result = compute_noether_gauge_decomposition(G)
            assert np.isfinite(result.energy_functional)
            assert np.isfinite(result.noether_charge)


# ---------------------------------------------------------------------------
# 4. Gauge-Conservation Coupling
# ---------------------------------------------------------------------------


class TestGaugeConservationCoupling:
    """Quantifies the K_φ-mediated coupling between gauge and conservation."""

    def test_returns_correct_type(self, ws_graph):
        result = compute_gauge_conservation_coupling(ws_graph)
        assert isinstance(result, GaugeConservationCoupling)

    def test_energy_is_gauge_invariant(self, ws_graph):
        """Energy deviation under gauge rotation should be ≈ 0."""
        result = compute_gauge_conservation_coupling(ws_graph)
        assert result.energy_gauge_invariance < 1e-6

    def test_charge_is_not_gauge_invariant(self, ws_graph):
        """Charge sensitivity ΔQ > 0 (charge changes under gauge rotation)."""
        result = compute_gauge_conservation_coupling(ws_graph)
        # For most non-trivial graphs, ΔQ > 0
        assert result.gauge_charge_sensitivity >= 0.0

    def test_sector_energies_positive(self, ws_graph):
        """Geometric and potential sector energies > 0."""
        result = compute_gauge_conservation_coupling(ws_graph)
        assert result.geometric_sector_energy > 0.0
        assert result.potential_sector_energy > 0.0

    def test_kappa_bounded(self, ws_graph):
        """Sector coupling parameter κ ∈ [0, 1]."""
        result = compute_gauge_conservation_coupling(ws_graph)
        assert 0.0 <= result.sector_coupling_parameter <= 1.0

    def test_shared_field_fraction_nonnegative(self, ws_graph):
        """K_φ fraction of ρ is well-defined and non-negative.

        Note: fraction can exceed 1 when K_φ and Φ_s have opposite signs
        (|K_φ| > |Φ_s + K_φ|), so we only check non-negativity.
        """
        result = compute_gauge_conservation_coupling(ws_graph)
        assert result.shared_field_fraction >= 0.0
        assert np.isfinite(result.shared_field_fraction)

    def test_ward_gauge_consistency_meaningful(self, ws_graph):
        """Ward-gauge consistency value is > 0."""
        result = compute_gauge_conservation_coupling(ws_graph)
        assert result.ward_gauge_consistency > 0.0

    def test_different_gauge_angles(self, ws_graph):
        """Sensitivity scales with gauge angle."""
        r1 = compute_gauge_conservation_coupling(ws_graph, gauge_angle=0.01)
        r2 = compute_gauge_conservation_coupling(ws_graph, gauge_angle=0.5)
        # Larger angle → larger ΔQ (approximately)
        if r1.gauge_charge_sensitivity > 1e-12:
            assert r2.gauge_charge_sensitivity > r1.gauge_charge_sensitivity * 0.5

    def test_seed_reproducibility(self, ws_graph):
        """Same seed → identical results."""
        r1 = compute_gauge_conservation_coupling(ws_graph, seed=77)
        r2 = compute_gauge_conservation_coupling(ws_graph, seed=77)
        assert r1.geometric_sector_energy == r2.geometric_sector_energy
        assert r1.energy_gauge_invariance == r2.energy_gauge_invariance


# ---------------------------------------------------------------------------
# 5. Symplectic-Gauge Compatibility
# ---------------------------------------------------------------------------


class TestSymplecticGaugeCompatibility:
    """Symplectic form ω is preserved under gauge rotations (det R = 1)."""

    def test_returns_correct_type(self, ws_graph):
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert isinstance(result, SymplecticGaugeCompatibility)

    def test_is_compatible(self, ws_graph):
        """Symplectic form must be gauge-compatible (area-preserving)."""
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert result.is_compatible

    def test_volumes_nonnegative(self, ws_graph):
        """Phase space volumes ≥ 0."""
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert result.geometric_volume >= 0.0
        assert result.potential_volume >= 0.0
        assert result.total_volume >= 0.0

    def test_total_is_sum(self, ws_graph):
        """Ω = Ω_geo + Ω_pot."""
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert (
            abs(
                result.total_volume
                - (result.geometric_volume + result.potential_volume)
            )
            < 1e-12
        )

    def test_poisson_brackets_finite(self, ws_graph):
        """Poisson bracket estimates are finite."""
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert np.isfinite(result.geometric_poisson)
        assert np.isfinite(result.potential_poisson)

    def test_gauge_volume_invariance_small(self, ws_graph):
        """Gauge volume deviation is a diagnostic, should be small for
        the 2-form (which is EXACTLY preserved)."""
        result = verify_symplectic_gauge_compatibility(ws_graph)
        assert np.isfinite(result.gauge_volume_invariance)

    def test_multi_topology(self, ws_graph, ba_graph, grid_graph):
        """Compatible across topologies."""
        for G in [ws_graph, ba_graph, grid_graph]:
            result = verify_symplectic_gauge_compatibility(G)
            assert result.is_compatible


# ---------------------------------------------------------------------------
# 6. Full Unification
# ---------------------------------------------------------------------------


class TestConservationGaugeUnification:
    """Complete pipeline: Grammar → Symmetry → Conservation → Gauge."""

    def test_returns_correct_type(self, ws_graph):
        result = run_conservation_gauge_unification(ws_graph)
        assert isinstance(result, ConservationGaugeUnification)

    def test_all_sub_results_present(self, ws_graph):
        """All 6 sub-analyses must be present."""
        result = run_conservation_gauge_unification(ws_graph)
        assert isinstance(result.grammar_symmetry, list)
        assert len(result.grammar_symmetry) == 6
        assert isinstance(result.action_consistency, ActionEnergyConsistency)
        assert isinstance(result.noether_gauge, NoetherGaugeDecomposition)
        assert isinstance(result.gauge_conservation, GaugeConservationCoupling)
        assert isinstance(result.symplectic_gauge, SymplecticGaugeCompatibility)

    def test_action_energy_identity_holds(self, ws_graph):
        """H_var = E_cons within the full pipeline."""
        result = run_conservation_gauge_unification(ws_graph)
        assert result.action_consistency.is_consistent

    def test_gauge_invariance_verified(self, ws_graph):
        """Gauge invariance is checked and reported."""
        result = run_conservation_gauge_unification(ws_graph)
        assert hasattr(result.gauge_invariance, "is_invariant")

    def test_symplectic_compatible(self, ws_graph):
        """Symplectic form is gauge-compatible."""
        result = run_conservation_gauge_unification(ws_graph)
        assert result.symplectic_gauge.is_compatible

    def test_quality_in_range(self, ws_graph):
        """Unification quality ∈ [0, 1]."""
        result = run_conservation_gauge_unification(ws_graph)
        assert 0.0 <= result.unification_quality <= 1.0

    def test_summary_contains_required_keys(self, ws_graph):
        """Summary dict must have all essential keys."""
        result = run_conservation_gauge_unification(ws_graph)
        required = {
            "grammar_rules_satisfied",
            "H_variational",
            "E_conservation",
            "H_E_relative_error",
            "T_kinetic",
            "V_potential",
            "kinetic_fraction",
            "noether_charge_Q",
            "gauge_invariant_energy",
            "yang_mills_action",
            "mean_psi_magnitude",
            "geometric_sector_energy",
            "potential_sector_energy",
            "sector_coupling_kappa",
            "shared_K_phi_fraction",
            "gauge_charge_sensitivity",
            "energy_gauge_invariance_dev",
            "symplectic_volume_geo",
            "symplectic_volume_pot",
            "poisson_bracket_geo",
            "poisson_bracket_pot",
            "unification_quality",
            "is_unified",
            "narrative",
        }
        assert required <= set(result.summary.keys())

    def test_narrative_is_string(self, ws_graph):
        """Narrative must be a non-empty string."""
        result = run_conservation_gauge_unification(ws_graph)
        assert isinstance(result.summary["narrative"], str)
        assert len(result.summary["narrative"]) > 10

    def test_seed_reproducibility(self, ws_graph):
        """Same gauge_seed → identical results."""
        r1 = run_conservation_gauge_unification(ws_graph, gauge_seed=99)
        r2 = run_conservation_gauge_unification(ws_graph, gauge_seed=99)
        assert r1.unification_quality == r2.unification_quality
        assert r1.is_unified == r2.is_unified
        assert (
            r1.action_consistency.hamiltonian_variational
            == r2.action_consistency.hamiltonian_variational
        )

    def test_multi_topology(self, ws_graph, ba_graph, grid_graph):
        """Full pipeline succeeds on all standard topologies."""
        for G in [ws_graph, ba_graph, grid_graph]:
            result = run_conservation_gauge_unification(G)
            assert result.action_consistency.is_consistent
            assert result.symplectic_gauge.is_compatible
            assert result.unification_quality > 0.0


# ---------------------------------------------------------------------------
# 7. Coherent Phase Graph (Phase-aligned — should give full unification)
# ---------------------------------------------------------------------------


class TestCoherentGraph:
    """A graph with aligned phases should pass all checks including U3."""

    @pytest.fixture
    def coherent_graph(self):
        """Graph with closely aligned phases (U3, U6 satisfied)."""
        rng = np.random.default_rng(42)
        G = nx.watts_strogatz_graph(20, 4, 0.3, seed=42)
        inject_defaults(G)
        base_phase = 1.0
        for node in G.nodes():
            # Small phase deviation → U3 satisfied
            G.nodes[node]["phase"] = base_phase + rng.uniform(-0.1, 0.1)
            G.nodes[node]["frequency"] = rng.uniform(0.1, 1.0)
            G.nodes[node]["delta_nfr"] = rng.uniform(-0.1, 0.1)
            G.nodes[node]["EPI"] = f"epi_{node}"
        G.graph["delta_phi_max"] = math.pi / 4
        return G

    def test_all_grammar_rules_satisfied(self, coherent_graph):
        """Coherent graph should satisfy all grammar rules."""
        mappings = compute_grammar_symmetry_mapping(coherent_graph)
        for m in mappings:
            assert (
                m.is_satisfied
            ), f"Rule {m.rule} not satisfied: diag={m.diagnostic_value}"

    def test_full_unification(self, coherent_graph):
        """Coherent graph should achieve full unification."""
        result = run_conservation_gauge_unification(coherent_graph)
        assert result.is_unified
        assert result.unification_quality > 0.8

    def test_high_decomposition_quality(self, coherent_graph):
        """Small δ_NFR → uniform energy → high decomposition quality."""
        result = compute_noether_gauge_decomposition(coherent_graph)
        assert result.decomposition_quality > 0.5

    def test_narrative_unified(self, coherent_graph):
        """Narrative should indicate UNIFIED."""
        result = run_conservation_gauge_unification(coherent_graph)
        assert "UNIFIED" in result.summary["narrative"]


# ---------------------------------------------------------------------------
# 8. Import via physics.__init__
# ---------------------------------------------------------------------------


class TestPhysicsImport:
    """Verify exports are accessible from tnfr.physics."""

    def test_import_dataclasses(self):
        from tnfr.physics import (
            ActionEnergyConsistency,
            ConservationGaugeUnification,
            GaugeConservationCoupling,
            GrammarSymmetryMapping,
            NoetherGaugeDecomposition,
            SymplecticGaugeCompatibility,
        )

        assert GrammarSymmetryMapping is not None

    def test_import_functions(self):
        from tnfr.physics import (
            compute_gauge_conservation_coupling,
            compute_grammar_symmetry_mapping,
            compute_noether_gauge_decomposition,
            run_conservation_gauge_unification,
            verify_action_energy_consistency,
            verify_symplectic_gauge_compatibility,
        )

        assert callable(run_conservation_gauge_unification)