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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
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tetrad_evaluator.py
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FILE: tests/physics/test_phase_transition.py

test_phase_transition.py

Tests for TNFR Phase Transition — Life/Non-Life as Universal Symmetry Breaking.

Validates the Structural Phase Transition Theorem: the symmetry breaking field 𝒮 = (|∇φ|² − K_φ²) + (J_φ² − J_ΔNFR²) serves as order parameter of a second-order phase transition between non-life (⟨𝒮⟩ = 0, symmetric) and life (⟨𝒮⟩ ≠ 0, broken symmetry).

Tests verify:

  1. Symmetric phase: uniform/equilibrium graphs → ⟨𝒮⟩ = 0 (NON_LIFE)
  2. Broken symmetry: heterogeneous phases/ΔNFR → ⟨𝒮⟩ ≠ 0 (LIFE)
  3. Chirality: life phase requires ⟨|χ|⟩ > 0 (homochirality)
  4. Critical exponent reference: γ_c = γ/π ≈ 0.1837 (calibrated TIER-2 scale; audit 2026: the measured exponent is protocol-dependent, not universal)
  5. Susceptibility: diverges near critical point (peak at transition)
  6. Coherence length: grows near critical regime
  7. Phase classification consistency across topologies
  8. Transition time detection via interpolation
  9. Critical time at peak susceptibility
  10. PhaseSnapshot capture correctness
  11. Time-series detect_phase_transition() pipeline
  12. Power-law fit of critical exponent
  13. Constants consistency with canonical module
  14. Dataclass integrity (PhaseTransitionTelemetry fields)
  15. Reproducibility under seed control

TIER: CORE PHYSICS — phase transition axiomatises life/non-life boundary.

Source Code

python
"""Tests for TNFR Phase Transition — Life/Non-Life as Universal Symmetry Breaking.

Validates the Structural Phase Transition Theorem: the symmetry breaking
field 𝒮 = (|∇φ|² − K_φ²) + (J_φ² − J_ΔNFR²) serves as order parameter
of a second-order phase transition between non-life (⟨𝒮⟩ = 0, symmetric)
and life (⟨𝒮⟩ ≠ 0, broken symmetry).

Tests verify:
1.  Symmetric phase: uniform/equilibrium graphs → ⟨𝒮⟩ = 0 (NON_LIFE)
2.  Broken symmetry: heterogeneous phases/ΔNFR → ⟨𝒮⟩ ≠ 0 (LIFE)
3.  Chirality: life phase requires ⟨|χ|⟩ > 0 (homochirality)
4.  Critical exponent reference: γ_c = γ/π ≈ 0.1837 (calibrated TIER-2 scale;
    audit 2026: the measured exponent is protocol-dependent, not universal)
5.  Susceptibility: diverges near critical point (peak at transition)
6.  Coherence length: grows near critical regime
7.  Phase classification consistency across topologies
8.  Transition time detection via interpolation
9.  Critical time at peak susceptibility
10. PhaseSnapshot capture correctness
11. Time-series detect_phase_transition() pipeline
12. Power-law fit of critical exponent
13. Constants consistency with canonical module
14. Dataclass integrity (PhaseTransitionTelemetry fields)
15. Reproducibility under seed control

TIER: CORE PHYSICS — phase transition axiomatises life/non-life boundary.
"""

from __future__ import annotations

import copy
import math
import os
import sys

import networkx as nx
import numpy as np
import pytest

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.physics.phase_transition import (
    Z_SIGNIFICANCE,
    Phase,
    PhaseSnapshot,
    PhaseTransitionTelemetry,
    capture_phase_snapshot,
    classify_phase,
    compute_chirality_statistics,
    compute_order_parameter,
    detect_phase_transition,
    fit_critical_exponent,
    symmetry_zscore,
)
from tnfr.physics.unified import (
    compute_chirality_field,
    compute_symmetry_breaking_field,
)

# ============================================================================
# Fixtures — build TNFR graphs in controlled structural regimes
# ============================================================================


@pytest.fixture
def uniform_graph() -> nx.Graph:
    """Graph with uniform phases and zero ΔNFR → symmetric (non-life)."""
    G = nx.watts_strogatz_graph(20, 4, 0.3, seed=42)
    inject_defaults(G)
    # All defaults are uniform → ⟨𝒮⟩ = 0
    return G


@pytest.fixture
def heterogeneous_graph() -> nx.Graph:
    """Graph with diverse phases and heterogeneous ΔNFR → broken symmetry."""
    rng = np.random.default_rng(42)
    G = nx.watts_strogatz_graph(30, 4, 0.3, seed=42)
    inject_defaults(G)
    for node in G.nodes():
        G.nodes[node]["theta"] = rng.uniform(0, 2 * np.pi)
        G.nodes[node]["phase"] = G.nodes[node]["theta"]
        G.nodes[node]["delta_nfr"] = rng.uniform(0.1, 1.5)
    return G


@pytest.fixture
def critical_graph() -> nx.Graph:
    """Graph near the critical regime — weak chirality, moderate 𝒮."""
    rng = np.random.default_rng(99)
    G = nx.watts_strogatz_graph(25, 4, 0.3, seed=99)
    inject_defaults(G)
    for node in G.nodes():
        # Small phase perturbation → near-zero 𝒮
        G.nodes[node]["theta"] = rng.uniform(0, 0.3)
        G.nodes[node]["phase"] = G.nodes[node]["theta"]
        G.nodes[node]["delta_nfr"] = rng.uniform(0.01, 0.1)
    return G


def _build_transition_sequence(n_steps: int = 20, seed: int = 42) -> tuple:
    """Build a time series that transitions from uniform to heterogeneous.

    Returns (graphs, times) where phases gradually diversify.
    """
    rng = np.random.default_rng(seed)
    graphs = []
    times = []
    for step in range(n_steps):
        t = float(step)
        times.append(t)
        G = nx.watts_strogatz_graph(20, 4, 0.3, seed=42)
        inject_defaults(G)
        # Gradually increase phase diversity and ΔNFR heterogeneity
        scale = step / max(n_steps - 1, 1)  # 0 → 1
        for node in G.nodes():
            G.nodes[node]["theta"] = rng.uniform(0, 2 * np.pi * scale)
            G.nodes[node]["phase"] = G.nodes[node]["theta"]
            G.nodes[node]["delta_nfr"] = rng.uniform(0.0, 1.5 * scale)
        graphs.append(G)
    return graphs, times


# ============================================================================
# Test 1: Constants consistency with canonical module
# ============================================================================


class TestEmergentClassification:
    """The classification scale is the emergent sampling-noise z-score.

    Audit 2026: the magic scales (γ/π)² and γ/(π+γ) were proven INERT
    (they sat in a two-order-of-magnitude gap; sweeping them changed no
    classification) and were removed. The phase is now decided by the
    statistical significance of symmetry breaking measured from the system.
    """

    def test_z_significance_is_one_sigma(self):
        """The only cut is z = 1 (the sampling-noise scale, not a constant)."""
        assert Z_SIGNIFICANCE == 1.0

    def test_zscore_zero_for_uniform_zero_field(self):
        """A perfectly uniform zero field has z = 0 (symmetric)."""
        assert symmetry_zscore(0.0, 0.0, 30) == 0.0

    def test_zscore_infinite_for_uniform_nonzero_field(self):
        """A uniform non-zero field (Var=0, mean>0) is fully broken: z = ∞."""
        assert symmetry_zscore(0.5, 0.0, 30) == math.inf

    def test_zscore_is_mean_over_standard_error(self):
        """z = |mean| / sqrt(Var/N) — emergent, measured from the system."""
        z = symmetry_zscore(0.2, 0.01, 25)
        assert z == pytest.approx(0.2 / math.sqrt(0.01 / 25), rel=1e-12)

    def test_zscore_zero_nodes_is_zero(self):
        """Empty system has no significance."""
        assert symmetry_zscore(1.0, 1.0, 0) == 0.0


# ============================================================================
# Test 2: Symmetric phase (non-life)
# ============================================================================


class TestSymmetricPhase:
    """Uniform equilibrium graphs must be classified as NON_LIFE."""

    def test_uniform_graph_order_parameter_zero(self, uniform_graph):
        """⟨𝒮⟩ = 0 for uniform phases and ΔNFR."""
        op = compute_order_parameter(uniform_graph)
        assert op["mean"] == pytest.approx(0.0, abs=1e-10)
        assert op["abs_mean"] == pytest.approx(0.0, abs=1e-10)

    def test_uniform_graph_chirality_zero(self, uniform_graph):
        """⟨χ⟩ = 0 for uniform phases."""
        chi = compute_chirality_statistics(uniform_graph)
        assert chi["mean"] == pytest.approx(0.0, abs=1e-10)
        assert chi["abs_mean"] == pytest.approx(0.0, abs=1e-10)

    def test_uniform_graph_classified_non_life(self, uniform_graph):
        """Uniform graph → Phase.NON_LIFE."""
        snap = capture_phase_snapshot(uniform_graph)
        assert snap.phase == Phase.NON_LIFE

    def test_uniform_no_homochirality(self, uniform_graph):
        """Uniform graph has no homochirality."""
        snap = capture_phase_snapshot(uniform_graph)
        assert snap.has_homochirality is False

    def test_susceptibility_zero_uniform(self, uniform_graph):
        """χ_𝒮 = 0 when all 𝒮(i) = 0."""
        op = compute_order_parameter(uniform_graph)
        assert op["susceptibility"] == pytest.approx(0.0, abs=1e-10)


# ============================================================================
# Test 3: Broken symmetry (life phase)
# ============================================================================


class TestBrokenSymmetry:
    """Heterogeneous graphs must show broken symmetry → LIFE."""

    def test_heterogeneous_nonzero_order_parameter(self, heterogeneous_graph):
        """⟨|𝒮|⟩ > 0 for diverse phases and ΔNFR."""
        op = compute_order_parameter(heterogeneous_graph)
        assert op["abs_mean"] > 0

    def test_heterogeneous_nonzero_chirality(self, heterogeneous_graph):
        """⟨|χ|⟩ > 0 for diverse phases (broken mirror symmetry)."""
        chi = compute_chirality_statistics(heterogeneous_graph)
        assert chi["abs_mean"] > 0

    def test_heterogeneous_classified_life(self, heterogeneous_graph):
        """Diverse phases with strong ΔNFR → Phase.LIFE."""
        snap = capture_phase_snapshot(heterogeneous_graph)
        assert snap.phase == Phase.LIFE

    def test_heterogeneous_has_homochirality(self, heterogeneous_graph):
        """Heterogeneous graph develops homochirality."""
        snap = capture_phase_snapshot(heterogeneous_graph)
        assert snap.has_homochirality is True

    def test_positive_susceptibility(self, heterogeneous_graph):
        """χ_𝒮 > 0 in the broken phase (finite fluctuations)."""
        op = compute_order_parameter(heterogeneous_graph)
        assert op["susceptibility"] > 0


# ============================================================================
# Test 4: Chirality and homochirality
# ============================================================================


class TestChirality:
    """Verify chirality field behaviour and homochirality detection."""

    def test_chirality_sign_is_handedness(self, heterogeneous_graph):
        """⟨χ⟩ has a definite sign → preferred handedness."""
        chi = compute_chirality_statistics(heterogeneous_graph)
        # Should be non-zero for heterogeneous network
        assert abs(chi["mean"]) > 0

    def test_chirality_abs_mean_geq_abs_mean(self, heterogeneous_graph):
        """⟨|χ|⟩ ≥ |⟨χ⟩| by Jensen's inequality."""
        chi = compute_chirality_statistics(heterogeneous_graph)
        assert chi["abs_mean"] >= abs(chi["mean"]) - 1e-12

    def test_chirality_variance_positive(self, heterogeneous_graph):
        """Chirality variance > 0 in heterogeneous phase."""
        chi = compute_chirality_statistics(heterogeneous_graph)
        assert chi["variance"] > 0

    def test_chirality_per_node_consistency(self, heterogeneous_graph):
        """compute_chirality_statistics consistent with unified.compute_chirality_field."""
        field = compute_chirality_field(heterogeneous_graph)
        stats = compute_chirality_statistics(heterogeneous_graph)
        values = np.array(list(field.values()))
        assert stats["mean"] == pytest.approx(float(np.mean(values)), rel=1e-10)
        assert stats["abs_mean"] == pytest.approx(
            float(np.mean(np.abs(values))), rel=1e-10
        )


# ============================================================================
# Test 5: Phase classification logic
# ============================================================================


class TestPhaseClassification:
    """Verify classify_phase() z-score logic (emergent, no magic constant)."""

    def test_zero_zscore_is_non_life(self):
        """order_z = 0 → NON_LIFE (within sampling noise of zero)."""
        assert classify_phase(0.0, 0.0) == Phase.NON_LIFE

    def test_subsigma_order_is_non_life(self):
        """order_z ≤ 1 → NON_LIFE even with high chirality_z."""
        assert classify_phase(0.9, 5.0) == Phase.NON_LIFE

    def test_boundary_z_equals_one_is_non_life(self):
        """order_z = 1 exactly → NON_LIFE (the cut is z > 1)."""
        assert classify_phase(1.0, 2.0) == Phase.NON_LIFE

    def test_high_order_high_chirality_is_life(self):
        """order_z > 1 AND chirality_z > 1 → LIFE."""
        assert classify_phase(5.0, 5.0) == Phase.LIFE

    def test_high_order_low_chirality_is_critical(self):
        """order_z > 1 but chirality_z ≤ 1 → CRITICAL."""
        assert classify_phase(5.0, 0.5) == Phase.CRITICAL

    def test_phase_is_enum(self):
        """Phase classification returns Phase enum."""
        assert isinstance(classify_phase(0.0, 0.0), Phase)

    def test_all_phases_reachable(self):
        """All three phases are reachable from z-scores."""
        assert classify_phase(0.0, 0.0) == Phase.NON_LIFE
        assert classify_phase(5.0, 5.0) == Phase.LIFE
        assert classify_phase(5.0, 0.5) == Phase.CRITICAL


# ============================================================================
# Test 6: PhaseSnapshot capture
# ============================================================================


class TestPhaseSnapshot:
    """Verify PhaseSnapshot dataclass integrity."""

    def test_snapshot_has_all_fields(self, uniform_graph):
        """Snapshot exposes all required structural diagnostics."""
        snap = capture_phase_snapshot(uniform_graph)
        assert hasattr(snap, "order_parameter")
        assert hasattr(snap, "order_parameter_abs")
        assert hasattr(snap, "chirality_mean")
        assert hasattr(snap, "chirality_abs_mean")
        assert hasattr(snap, "susceptibility")
        assert hasattr(snap, "coherence_length")
        assert hasattr(snap, "phase")
        assert hasattr(snap, "has_homochirality")

    def test_snapshot_order_parameter_abs_nonneg(self, heterogeneous_graph):
        """|⟨𝒮⟩| ≥ 0 always."""
        snap = capture_phase_snapshot(heterogeneous_graph)
        assert snap.order_parameter_abs >= 0

    def test_snapshot_susceptibility_nonneg(self, heterogeneous_graph):
        """χ_𝒮 = N·Var(𝒮) ≥ 0 always."""
        snap = capture_phase_snapshot(heterogeneous_graph)
        assert snap.susceptibility >= 0

    def test_snapshot_coherence_length_nonneg(self, heterogeneous_graph):
        """ξ_C ≥ 0."""
        snap = capture_phase_snapshot(heterogeneous_graph)
        assert snap.coherence_length >= 0


# ============================================================================
# Test 7: Time-series phase transition detection
# ============================================================================


class TestPhaseTransitionDetection:
    """Verify detect_phase_transition() on evolving graph sequences."""

    def test_transition_detected_in_diversifying_sequence(self):
        """System transitioning from uniform to heterogeneous triggers detection."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)

        assert isinstance(tel, PhaseTransitionTelemetry)
        assert len(tel.times) == 20
        assert len(tel.order_parameter) == 20
        assert len(tel.phase_classification) == 20

    def test_early_steps_non_life(self):
        """First time steps (uniform) → NON_LIFE."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        # Step 0 is fully uniform
        assert tel.phase_classification[0] == Phase.NON_LIFE

    def test_late_steps_life(self):
        """Last steps (fully heterogeneous) → LIFE or CRITICAL."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        # Last step has maximum diversity
        assert tel.phase_classification[-1] in (Phase.LIFE, Phase.CRITICAL)

    def test_order_parameter_increases(self):
        """⟨|𝒮|⟩ increases as diversity grows."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        # Final order parameter should exceed initial
        assert tel.order_parameter_abs[-1] > tel.order_parameter_abs[0]

    def test_transition_time_exists(self):
        """Transition time is detected (not None)."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        # Should detect a crossing
        assert tel.transition_time is not None
        assert tel.transition_time >= times[0]
        assert tel.transition_time <= times[-1]

    def test_critical_time_exists(self):
        """Critical time (peak susceptibility) is detected."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        assert tel.critical_time is not None

    def test_measured_exponent_is_only_exponent(self):
        """Only the MEASURED exponent is stored; no derived 'theoretical' one.

        Audit 2026: the exponent is protocol-dependent (measured), not a
        universal γ/π constant, so theoretical_exponent was removed.
        """
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        assert hasattr(tel, "measured_exponent")
        assert not hasattr(tel, "theoretical_exponent")

    def test_telemetry_arrays_correct_length(self):
        """All arrays have matching length."""
        graphs, times = _build_transition_sequence(n_steps=15, seed=7)
        tel = detect_phase_transition(graphs, times)
        assert len(tel.order_parameter) == 15
        assert len(tel.order_parameter_abs) == 15
        assert len(tel.chirality_mean) == 15
        assert len(tel.chirality_abs_mean) == 15
        assert len(tel.susceptibility) == 15
        assert len(tel.coherence_length) == 15
        assert len(tel.phase_classification) == 15


# ============================================================================
# Test 8: Susceptibility behaviour near transition
# ============================================================================


class TestSusceptibility:
    """Susceptibility χ_𝒮 = N·Var(𝒮) should peak near the critical point."""

    def test_susceptibility_peak_in_middle(self):
        """Susceptibility should peak somewhere between fully uniform and fully diverse."""
        graphs, times = _build_transition_sequence(n_steps=25, seed=42)
        tel = detect_phase_transition(graphs, times)
        peak_idx = int(np.argmax(tel.susceptibility))
        # Peak should not be at the very first or very last step
        # (transition occurs in the middle of the ramp)
        assert peak_idx > 0, "Peak susceptibility at step 0 is unexpected"

    def test_susceptibility_nonnegative(self):
        """χ_𝒮 ≥ 0 at all times (it's a variance)."""
        graphs, times = _build_transition_sequence(n_steps=15, seed=42)
        tel = detect_phase_transition(graphs, times)
        assert np.all(tel.susceptibility >= -1e-12)


# ============================================================================
# Test 9: Critical exponent fitting
# ============================================================================


class TestCriticalExponentFit:
    """Verify critical exponent estimation and theoretical comparison."""

    def test_fit_returns_dict(self):
        """fit_critical_exponent returns a dictionary with expected keys."""
        graphs, times = _build_transition_sequence(n_steps=20, seed=42)
        tel = detect_phase_transition(graphs, times)
        result = fit_critical_exponent(
            times, tel.order_parameter_abs, tel.critical_time
        )
        assert "exponent" in result
        assert "r_squared" in result

    def test_fit_result_has_no_theoretical(self):
        """The fit returns only measured observables (no derived 'theoretical').

        Audit 2026: there is no universal γ/π exponent to compare against.
        """
        result = fit_critical_exponent([0, 1, 2], np.array([0.0, 0.1, 0.5]), None)
        assert "theoretical" not in result
        assert "exponent" in result and "r_squared" in result

    def test_fit_with_insufficient_data_returns_none(self):
        """Too few data points → exponent is None."""
        result = fit_critical_exponent([0, 1], np.array([0.0, 0.1]), 0.5)
        assert result["exponent"] is None
        assert result["r_squared"] is None

    def test_measured_exponent_positive(self):
        """Fitted exponent should be positive for an increasing order parameter."""
        graphs, times = _build_transition_sequence(n_steps=30, seed=42)
        tel = detect_phase_transition(graphs, times)
        if tel.measured_exponent is not None:
            # Power-law growth → positive exponent
            assert tel.measured_exponent > 0


# ============================================================================
# Test 10: Multi-topology validation
# ============================================================================


class TestMultiTopology:
    """Phase classification must work across different network topologies."""

    @pytest.mark.parametrize(
        "graph_fn,seed",
        [
            (lambda s: nx.watts_strogatz_graph(20, 4, 0.3, seed=s), 42),
            (lambda s: nx.barabasi_albert_graph(20, 2, seed=s), 42),
            (lambda s: nx.grid_2d_graph(5, 4), 42),
            (lambda s: nx.erdos_renyi_graph(20, 0.3, seed=s), 42),
        ],
        ids=["watts_strogatz", "barabasi_albert", "grid_2d", "erdos_renyi"],
    )
    def test_uniform_is_non_life(self, graph_fn, seed):
        """Uniform initialization → NON_LIFE across topologies."""
        G = graph_fn(seed)
        inject_defaults(G)
        snap = capture_phase_snapshot(G)
        assert snap.phase == Phase.NON_LIFE

    @pytest.mark.parametrize(
        "graph_fn,seed",
        [
            (lambda s: nx.watts_strogatz_graph(30, 4, 0.3, seed=s), 42),
            (lambda s: nx.barabasi_albert_graph(30, 2, seed=s), 42),
            (lambda s: nx.erdos_renyi_graph(30, 0.3, seed=s), 42),
        ],
        ids=["watts_strogatz", "barabasi_albert", "erdos_renyi"],
    )
    def test_heterogeneous_is_life(self, graph_fn, seed):
        """Heterogeneous phases + ΔNFR → LIFE across topologies."""
        rng = np.random.default_rng(seed)
        G = graph_fn(seed)
        inject_defaults(G)
        for node in G.nodes():
            G.nodes[node]["theta"] = rng.uniform(0, 2 * np.pi)
            G.nodes[node]["phase"] = G.nodes[node]["theta"]
            G.nodes[node]["delta_nfr"] = rng.uniform(0.1, 1.5)
        snap = capture_phase_snapshot(G)
        assert snap.phase in (Phase.LIFE, Phase.CRITICAL)
        assert snap.order_parameter_abs > 0


# ============================================================================
# Test 11: Consistency with unified.py field computations
# ============================================================================


class TestUnifiedConsistency:
    """Order parameter and chirality must match unified.py single source of truth."""

    def test_order_parameter_matches_symmetry_breaking_field(self, heterogeneous_graph):
        """compute_order_parameter delegates to unified.compute_symmetry_breaking_field."""
        S_field = compute_symmetry_breaking_field(heterogeneous_graph)
        values = np.array(list(S_field.values()))
        op = compute_order_parameter(heterogeneous_graph)
        assert op["mean"] == pytest.approx(float(np.mean(values)), rel=1e-10)
        assert op["variance"] == pytest.approx(float(np.var(values)), rel=1e-10)

    def test_chirality_matches_chirality_field(self, heterogeneous_graph):
        """compute_chirality_statistics delegates to unified.compute_chirality_field."""
        chi_field = compute_chirality_field(heterogeneous_graph)
        values = np.array(list(chi_field.values()))
        chi = compute_chirality_statistics(heterogeneous_graph)
        assert chi["mean"] == pytest.approx(float(np.mean(values)), rel=1e-10)


# ============================================================================
# Test 12: Reproducibility under seed control
# ============================================================================


class TestReproducibility:
    """Identical seeds must produce identical phase transition telemetry."""

    def test_snapshot_reproducible(self):
        """Same graph → same snapshot."""
        G = nx.watts_strogatz_graph(20, 4, 0.3, seed=42)
        inject_defaults(G)
        rng = np.random.default_rng(42)
        for node in G.nodes():
            G.nodes[node]["theta"] = rng.uniform(0, 2 * np.pi)
            G.nodes[node]["phase"] = G.nodes[node]["theta"]
            G.nodes[node]["delta_nfr"] = rng.uniform(0.1, 1.0)

        snap1 = capture_phase_snapshot(G)
        snap2 = capture_phase_snapshot(G)
        assert snap1.order_parameter == snap2.order_parameter
        assert snap1.chirality_mean == snap2.chirality_mean
        assert snap1.phase == snap2.phase

    def test_transition_detection_reproducible(self):
        """Same sequence → same telemetry."""
        g1, t1 = _build_transition_sequence(n_steps=10, seed=77)
        g2, t2 = _build_transition_sequence(n_steps=10, seed=77)
        tel1 = detect_phase_transition(g1, t1)
        tel2 = detect_phase_transition(g2, t2)
        np.testing.assert_array_almost_equal(tel1.order_parameter, tel2.order_parameter)
        assert tel1.transition_time == tel2.transition_time


# ============================================================================
# Test 13: Coherence length behaviour
# ============================================================================


class TestCoherenceLength:
    """ξ_C should grow as the system approaches the critical regime."""

    def test_coherence_length_nonneg_in_telemetry(self):
        """ξ_C ≥ 0 at all time steps."""
        graphs, times = _build_transition_sequence(n_steps=15, seed=42)
        tel = detect_phase_transition(graphs, times)
        assert np.all(tel.coherence_length >= 0)


# ============================================================================
# Test 14: Edge cases
# ============================================================================


class TestEdgeCases:
    """Handle degenerate inputs gracefully."""

    def test_single_node_graph(self):
        """Single-node graph should not crash."""
        G = nx.Graph()
        G.add_node(0)
        inject_defaults(G)
        snap = capture_phase_snapshot(G)
        assert snap.phase == Phase.NON_LIFE

    def test_two_node_graph(self):
        """Two-node graph computes without error."""
        G = nx.path_graph(2)
        inject_defaults(G)
        snap = capture_phase_snapshot(G)
        assert isinstance(snap.phase, Phase)

    def test_empty_time_series(self):
        """Zero-length time series returns empty telemetry."""
        tel = detect_phase_transition([], [])
        assert len(tel.times) == 0
        assert tel.transition_time is None
        assert tel.critical_time is None

    def test_single_step_time_series(self):
        """Single-step time series computes without crash."""
        G = nx.watts_strogatz_graph(10, 4, 0.3, seed=42)
        inject_defaults(G)
        tel = detect_phase_transition([G], [0.0])
        assert len(tel.phase_classification) == 1


# ============================================================================
# Test 15: Order parameter statistics correctness
# ============================================================================


class TestOrderParameterStatistics:
    """Verify mathematical correctness of order parameter statistics."""

    def test_n_nodes_correct(self, heterogeneous_graph):
        """n_nodes matches graph size."""
        op = compute_order_parameter(heterogeneous_graph)
        assert op["n_nodes"] == heterogeneous_graph.number_of_nodes()

    def test_abs_mean_geq_abs_of_mean(self, heterogeneous_graph):
        """⟨|𝒮|⟩ ≥ |⟨𝒮⟩| by Jensen's inequality."""
        op = compute_order_parameter(heterogeneous_graph)
        assert op["abs_mean"] >= abs(op["mean"]) - 1e-12

    def test_variance_nonneg(self, heterogeneous_graph):
        """Var(𝒮) ≥ 0."""
        op = compute_order_parameter(heterogeneous_graph)
        assert op["variance"] >= -1e-12

    def test_susceptibility_equals_n_times_var(self, heterogeneous_graph):
        """χ_𝒮 = N · Var(𝒮)."""
        op = compute_order_parameter(heterogeneous_graph)
        expected = op["n_nodes"] * op["variance"]
        assert op["susceptibility"] == pytest.approx(expected, rel=1e-10)