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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: tests/physics/test_spectral_conservation.py

test_spectral_conservation.py

Tests for TNFR Spectral Conservation — Conservation Laws in Spectral Space.

Validates the spectral continuity theorem: dρ̂_k/dt + λ_k · Ĵ_k = Ŝ_k (mode-by-mode conservation)

derived via GFT of the structural continuity equation ∂ρ/∂t + div(J) = S_grammar.

Tests verify:

  1. SpectralConservationBalance: Two-snapshot spectral continuity
  2. Parseval identity: ‖ρ‖² = Σ|ρ̂_k|² across snapshots
  3. SpectralWardIdentity: Per-operator spectral signatures
  4. SpectralLyapunovResult: Mode-by-mode energy stability
  5. SpectralSectorDecomposition: Potential vs. geometric sector in eigenbasis
  6. Spectral energy conservation via Parseval across all five fields
  7. Mode classification: conserved / dissipative / accumulative
  8. Cross-topology validation: Watts-Strogatz, Barabási-Albert, Grid
  9. Equilibrium networks: identical snapshots → zero residual
  10. Reproducibility: deterministic seeds → identical results

TIER: CORE PHYSICS — spectral conservation extends the structural conservation theorem to the eigenvalue domain.

Source Code

python
"""Tests for TNFR Spectral Conservation — Conservation Laws in Spectral Space.

Validates the spectral continuity theorem:
    dρ̂_k/dt + λ_k · Ĵ_k = Ŝ_k  (mode-by-mode conservation)

derived via GFT of the structural continuity equation
    ∂ρ/∂t + div(J) = S_grammar.

Tests verify:
1.  SpectralConservationBalance: Two-snapshot spectral continuity
2.  Parseval identity: ‖ρ‖² = Σ|ρ̂_k|² across snapshots
3.  SpectralWardIdentity: Per-operator spectral signatures
4.  SpectralLyapunovResult: Mode-by-mode energy stability
5.  SpectralSectorDecomposition: Potential vs. geometric sector in eigenbasis
6.  Spectral energy conservation via Parseval across all five fields
7.  Mode classification: conserved / dissipative / accumulative
8.  Cross-topology validation: Watts-Strogatz, Barabási-Albert, Grid
9.  Equilibrium networks: identical snapshots → zero residual
10. Reproducibility: deterministic seeds → identical results

TIER: CORE PHYSICS — spectral conservation extends the structural conservation
theorem to the eigenvalue domain.
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np
import pytest

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.constants import inject_defaults
from tnfr.physics.conservation import (
    ConservationSnapshot,
    capture_conservation_snapshot,
    verify_conservation_balance,
)
from tnfr.physics.spectral_conservation import (
    SpectralConservationBalance,
    SpectralLyapunovResult,
    SpectralSectorDecomposition,
    SpectralWardIdentity,
    classify_spectral_modes,
    compute_spectral_energy_conservation,
    compute_spectral_lyapunov,
    compute_spectral_ward_identity,
    decompose_spectral_sectors,
    verify_spectral_conservation_balance,
)

# ---------------------------------------------------------------------------
# Fixtures
# ---------------------------------------------------------------------------


def _make_tnfr_graph(
    n: int = 30,
    topology: str = "watts_strogatz",
    seed: int = 42,
) -> nx.Graph:
    """Build a TNFR-ready graph with canonical attributes."""
    rng = np.random.default_rng(seed)

    if topology == "watts_strogatz":
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)
    elif topology == "barabasi_albert":
        G = nx.barabasi_albert_graph(n, 3, seed=seed)
    elif topology == "grid":
        side = int(math.sqrt(n))
        G = nx.grid_2d_graph(side, side)
    else:
        G = nx.watts_strogatz_graph(n, 4, 0.3, seed=seed)

    inject_defaults(G)

    for node in G.nodes():
        G.nodes[node]["phase"] = rng.uniform(0, 2 * math.pi)
        G.nodes[node]["frequency"] = rng.uniform(0.1, 1.0)
        G.nodes[node]["delta_nfr"] = rng.uniform(-0.5, 0.5)
        G.nodes[node]["EPI"] = f"epi_{node}"

    return G


def _perturb_graph(G: nx.Graph, seed: int = 99) -> nx.Graph:
    """Create a slightly perturbed copy for two-snapshot tests."""
    import copy

    G2 = copy.deepcopy(G)
    rng = np.random.default_rng(seed)
    for node in G2.nodes():
        G2.nodes[node]["phase"] += rng.uniform(-0.1, 0.1)
        G2.nodes[node]["delta_nfr"] += rng.uniform(-0.05, 0.05)
    return G2


@pytest.fixture
def ws_graph():
    return _make_tnfr_graph(30, "watts_strogatz")


@pytest.fixture
def ba_graph():
    return _make_tnfr_graph(30, "barabasi_albert")


@pytest.fixture
def grid_graph():
    return _make_tnfr_graph(25, "grid")


@pytest.fixture
def two_snapshots(ws_graph):
    """Provide before/after snapshots from WS graph and perturbed copy."""
    snap_before = capture_conservation_snapshot(ws_graph)
    G2 = _perturb_graph(ws_graph)
    snap_after = capture_conservation_snapshot(G2)
    return snap_before, snap_after, ws_graph


# ===========================================================================
# Test: SpectralConservationBalance
# ===========================================================================


class TestSpectralConservationBalance:
    """Two-snapshot spectral continuity verification."""

    def test_returns_valid_dataclass(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert isinstance(result, SpectralConservationBalance)

    def test_array_shapes(self, two_snapshots):
        before, after, G = two_snapshots
        n = G.number_of_nodes()
        result = verify_spectral_conservation_balance(before, after, G)
        assert result.eigenvalues.shape == (n,)
        assert result.eigenvectors.shape == (n, n)
        assert result.rho_spectrum_before.shape == (n,)
        assert result.rho_spectrum_after.shape == (n,)
        assert result.div_spectrum_mean.shape == (n,)
        assert result.mode_residuals.shape == (n,)
        assert result.mode_sources.shape == (n,)

    def test_eigenvalues_ascending(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        diffs = np.diff(result.eigenvalues)
        assert np.all(diffs >= -1e-10)

    def test_zero_mode_eigenvalue(self, two_snapshots):
        """Connected graph has λ_0 ≈ 0."""
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert abs(result.eigenvalues[0]) < 1e-10

    def test_spectral_gap_positive(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert result.spectral_gap > 0.0

    def test_residuals_non_negative(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert np.all(result.mode_residuals >= 0.0)

    def test_parseval_values_non_negative(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert result.parseval_before >= 0.0
        assert result.parseval_after >= 0.0
        assert result.parseval_drift >= 0.0

    def test_conservation_quality_bands_bounded(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        for band in ("low", "mid", "high"):
            assert band in result.conservation_quality_by_band
            q = result.conservation_quality_by_band[band]
            assert 0.0 <= q <= 1.0

    def test_overall_quality_bounded(self, two_snapshots):
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        assert 0.0 < result.overall_spectral_quality <= 1.0

    def test_conserved_modes_count_bounded(self, two_snapshots):
        before, after, G = two_snapshots
        n = G.number_of_nodes()
        result = verify_spectral_conservation_balance(before, after, G)
        assert 0 <= result.n_conserved_modes <= n

    def test_identical_snapshots_zero_temporal_change(self, ws_graph):
        """Identical snapshots → zero temporal change, zero Parseval drift.

        Note: mode_residuals = |drho_dt + λ_k · div_hat| are NOT zero
        because the static source term Ŝ_k = λ_k · div_hat is non-zero
        in a typical TNFR network. This is physically correct — the
        continuity equation reads 0 + div(J) = S_grammar at equilibrium.
        """
        snap = capture_conservation_snapshot(ws_graph)
        result = verify_spectral_conservation_balance(snap, snap, ws_graph)
        # Temporal change is zero
        assert np.allclose(result.rho_spectrum_before, result.rho_spectrum_after)
        # Parseval drift is zero
        assert result.parseval_drift < 1e-12

    def test_low_modes_better_conserved_than_high(self, two_snapshots):
        """Low-frequency modes should generally conserve better."""
        before, after, G = two_snapshots
        result = verify_spectral_conservation_balance(before, after, G)
        q = result.conservation_quality_by_band
        # Low modes should be at least as well-conserved as high modes
        # (statistical tendency, not strict for all networks)
        assert q["low"] >= q["high"] * 0.5  # soft threshold


# ===========================================================================
# Test: Parseval identity
# ===========================================================================


class TestParsevalConservation:
    """Parseval: ‖ρ‖² = Σ|ρ̂_k|² must hold at each snapshot."""

    def test_parseval_matches_spatial_energy(self, ws_graph):
        """Spectral energy must equal spatial energy (Parseval theorem)."""
        snap = capture_conservation_snapshot(ws_graph)
        nodes = sorted(snap.charge_density.keys())
        rho_vec = np.array([snap.charge_density[n] for n in nodes])
        spatial_energy = float(np.sum(rho_vec**2))

        result = verify_spectral_conservation_balance(snap, snap, ws_graph)
        assert abs(result.parseval_before - spatial_energy) < 1e-10

    def test_parseval_after_perturbation(self, ws_graph):
        """Parseval holds on perturbed graph too."""
        G2 = _perturb_graph(ws_graph)
        snap = capture_conservation_snapshot(G2)
        nodes = sorted(snap.charge_density.keys())
        rho_vec = np.array([snap.charge_density[n] for n in nodes])
        spatial_energy = float(np.sum(rho_vec**2))

        result = verify_spectral_conservation_balance(snap, snap, G2)
        assert abs(result.parseval_before - spatial_energy) < 1e-10


# ===========================================================================
# Test: SpectralWardIdentity
# ===========================================================================


class TestSpectralWardIdentity:
    """Per-operator spectral conservation signature."""

    def test_returns_valid_dataclass(self, two_snapshots):
        before, after, G = two_snapshots
        ward = compute_spectral_ward_identity(before, after, "IL", G)
        assert isinstance(ward, SpectralWardIdentity)

    def test_spectrum_shape(self, two_snapshots):
        before, after, G = two_snapshots
        n = G.number_of_nodes()
        ward = compute_spectral_ward_identity(before, after, "OZ", G)
        assert ward.delta_rho_spectrum.shape == (n,)
        assert ward.mode_energy_change.shape == (n,)

    def test_operator_name_persisted(self, two_snapshots):
        before, after, G = two_snapshots
        ward = compute_spectral_ward_identity(before, after, "THOL", G)
        assert ward.operator_name == "THOL"

    def test_affected_band_valid(self, two_snapshots):
        before, after, G = two_snapshots
        ward = compute_spectral_ward_identity(before, after, "AL", G)
        assert ward.affected_band in ("low", "mid", "high")

    def test_spectral_character_valid(self, two_snapshots):
        before, after, G = two_snapshots
        ward = compute_spectral_ward_identity(before, after, "IL", G)
        assert ward.spectral_character in ("conservative", "dissipative", "injective")

    def test_identical_snapshots_conservative(self, ws_graph):
        """No change → conservative character."""
        snap = capture_conservation_snapshot(ws_graph)
        ward = compute_spectral_ward_identity(snap, snap, "IL", ws_graph)
        assert ward.spectral_character == "conservative"
        assert abs(ward.total_spectral_energy_change) < 1e-12

    def test_energy_change_consistent(self, two_snapshots):
        """Total energy change is sum of mode energies."""
        before, after, G = two_snapshots
        ward = compute_spectral_ward_identity(before, after, "OZ", G)
        expected = float(np.sum(ward.mode_energy_change))
        assert abs(ward.total_spectral_energy_change - expected) < 1e-10


# ===========================================================================
# Test: SpectralLyapunovResult
# ===========================================================================


class TestSpectralLyapunov:
    """Mode-by-mode Lyapunov energy stability."""

    def test_returns_valid_dataclass(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_lyapunov(before, after, G)
        assert isinstance(result, SpectralLyapunovResult)

    def test_array_shapes(self, two_snapshots):
        before, after, G = two_snapshots
        n = G.number_of_nodes()
        result = compute_spectral_lyapunov(before, after, G)
        assert result.mode_energies_before.shape == (n,)
        assert result.mode_energies_after.shape == (n,)
        assert result.mode_derivatives.shape == (n,)

    def test_energies_non_negative(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_lyapunov(before, after, G)
        assert np.all(result.mode_energies_before >= -1e-12)
        assert np.all(result.mode_energies_after >= -1e-12)

    def test_total_derivative_equals_sum(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_lyapunov(before, after, G)
        expected = float(np.sum(result.mode_derivatives))
        assert abs(result.total_derivative - expected) < 1e-10

    def test_stable_fraction_bounded(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_lyapunov(before, after, G)
        assert 0.0 <= result.stable_fraction <= 1.0

    def test_identical_snapshots_stable(self, ws_graph):
        """No change → zero derivatives, fully stable."""
        snap = capture_conservation_snapshot(ws_graph)
        result = compute_spectral_lyapunov(snap, snap, ws_graph)
        assert np.allclose(result.mode_derivatives, 0.0, atol=1e-12)
        assert result.is_spectrally_stable
        assert result.n_unstable_modes == 0
        assert result.stable_fraction == 1.0

    def test_unstable_modes_consistent(self, two_snapshots):
        before, after, G = two_snapshots
        n = G.number_of_nodes()
        result = compute_spectral_lyapunov(before, after, G)
        assert 0 <= result.n_unstable_modes <= n
        exp_stable = 1.0 - result.n_unstable_modes / max(n, 1)
        assert abs(result.stable_fraction - exp_stable) < 1e-12


# ===========================================================================
# Test: SpectralSectorDecomposition
# ===========================================================================


class TestSpectralSectorDecomposition:
    """Potential vs. geometric sector in spectral domain."""

    def test_returns_valid_dataclass(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert isinstance(result, SpectralSectorDecomposition)

    def test_spectrum_shapes(self, ws_graph):
        n = ws_graph.number_of_nodes()
        result = decompose_spectral_sectors(ws_graph)
        assert result.phi_s_spectrum.shape == (n,)
        assert result.k_phi_spectrum.shape == (n,)
        assert result.sector_coupling_by_mode.shape == (n,)

    def test_energies_non_negative(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert result.potential_sector_energy >= 0.0
        assert result.geometric_sector_energy >= 0.0

    def test_dominant_sector_valid(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert result.dominant_sector in ("potential", "geometric")

    def test_dominant_sector_matches_energy(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        if result.potential_sector_energy >= result.geometric_sector_energy:
            assert result.dominant_sector == "potential"
        else:
            assert result.dominant_sector == "geometric"

    def test_correlation_bounded(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert -1.0 <= result.cross_sector_correlation <= 1.0

    def test_sector_ratio_positive(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert result.sector_ratio >= 0.0

    def test_coupling_by_mode_non_negative(self, ws_graph):
        result = decompose_spectral_sectors(ws_graph)
        assert np.all(result.sector_coupling_by_mode >= 0.0)

    def test_with_explicit_snapshot(self, ws_graph):
        snap = capture_conservation_snapshot(ws_graph)
        result = decompose_spectral_sectors(ws_graph, snapshot=snap)
        assert isinstance(result, SpectralSectorDecomposition)

    @pytest.mark.parametrize("topo", ["watts_strogatz", "barabasi_albert", "grid"])
    def test_across_topologies(self, topo):
        G = _make_tnfr_graph(25, topo)
        result = decompose_spectral_sectors(G)
        assert isinstance(result, SpectralSectorDecomposition)
        assert result.potential_sector_energy >= 0.0
        assert result.geometric_sector_energy >= 0.0


# ===========================================================================
# Test: Spectral energy conservation (Parseval per field)
# ===========================================================================


class TestSpectralEnergyConservation:
    """Parseval-based energy drift across all five canonical fields."""

    def test_returns_all_keys(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_energy_conservation(before, after, G)
        expected_keys = {
            "phi_s_drift",
            "grad_phi_drift",
            "k_phi_drift",
            "j_phi_drift",
            "j_dnfr_drift",
            "total_energy_before",
            "total_energy_after",
            "total_drift",
        }
        assert set(result.keys()) == expected_keys

    def test_drifts_non_negative(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_energy_conservation(before, after, G)
        for key in (
            "phi_s_drift",
            "grad_phi_drift",
            "k_phi_drift",
            "j_phi_drift",
            "j_dnfr_drift",
            "total_drift",
        ):
            assert result[key] >= 0.0

    def test_energies_non_negative(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_energy_conservation(before, after, G)
        assert result["total_energy_before"] >= 0.0
        assert result["total_energy_after"] >= 0.0

    def test_identical_snapshots_zero_drift(self, ws_graph):
        snap = capture_conservation_snapshot(ws_graph)
        result = compute_spectral_energy_conservation(snap, snap, ws_graph)
        for key in (
            "phi_s_drift",
            "grad_phi_drift",
            "k_phi_drift",
            "j_phi_drift",
            "j_dnfr_drift",
            "total_drift",
        ):
            assert result[key] < 1e-12

    def test_total_drift_finite(self, two_snapshots):
        before, after, G = two_snapshots
        result = compute_spectral_energy_conservation(before, after, G)
        assert np.isfinite(result["total_drift"])


# ===========================================================================
# Test: Mode classification
# ===========================================================================


class TestModeClassification:
    """Conserved / dissipative / accumulative mode labeling."""

    def test_returns_expected_keys(self, ws_graph):
        result = classify_spectral_modes(ws_graph)
        expected_keys = {
            "mode_labels",
            "n_conserved",
            "n_dissipative",
            "n_accumulative",
            "mode_transport_rates",
        }
        assert set(result.keys()) == expected_keys

    def test_labels_valid(self, ws_graph):
        result = classify_spectral_modes(ws_graph)
        valid = {"conserved", "dissipative", "accumulative"}
        for label in result["mode_labels"]:
            assert label in valid

    def test_counts_sum_to_n(self, ws_graph):
        n = ws_graph.number_of_nodes()
        result = classify_spectral_modes(ws_graph)
        total = (
            result["n_conserved"] + result["n_dissipative"] + result["n_accumulative"]
        )
        assert total == n

    def test_transport_rates_shape(self, ws_graph):
        n = ws_graph.number_of_nodes()
        result = classify_spectral_modes(ws_graph)
        assert result["mode_transport_rates"].shape == (n,)

    def test_with_explicit_snapshot(self, ws_graph):
        snap = capture_conservation_snapshot(ws_graph)
        result = classify_spectral_modes(ws_graph, snapshot=snap)
        assert result["n_conserved"] >= 0

    def test_custom_threshold(self, ws_graph):
        result = classify_spectral_modes(ws_graph, threshold=1e-10)
        # Very tight threshold → fewer conserved modes
        assert result["n_conserved"] >= 0

    @pytest.mark.parametrize("topo", ["watts_strogatz", "barabasi_albert", "grid"])
    def test_across_topologies(self, topo):
        G = _make_tnfr_graph(25, topo)
        result = classify_spectral_modes(G)
        n = G.number_of_nodes()
        total = (
            result["n_conserved"] + result["n_dissipative"] + result["n_accumulative"]
        )
        assert total == n


# ===========================================================================
# Test: Cross-topology validation
# ===========================================================================


class TestCrossTopology:
    """Verify all spectral conservation functions across topologies."""

    @pytest.mark.parametrize("topo", ["watts_strogatz", "barabasi_albert", "grid"])
    def test_balance_across_topologies(self, topo):
        G = _make_tnfr_graph(25, topo)
        G2 = _perturb_graph(G)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = verify_spectral_conservation_balance(before, after, G)
        assert isinstance(result, SpectralConservationBalance)
        assert result.spectral_gap >= 0.0

    @pytest.mark.parametrize("topo", ["watts_strogatz", "barabasi_albert", "grid"])
    def test_lyapunov_across_topologies(self, topo):
        G = _make_tnfr_graph(25, topo)
        G2 = _perturb_graph(G)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = compute_spectral_lyapunov(before, after, G)
        assert isinstance(result, SpectralLyapunovResult)
        assert 0.0 <= result.stable_fraction <= 1.0


# ===========================================================================
# Test: Reproducibility (Invariant #6)
# ===========================================================================


class TestReproducibility:
    """Same seed produces identical spectral conservation results."""

    def test_deterministic_balance(self):
        G1 = _make_tnfr_graph(20, "watts_strogatz", seed=77)
        G1p = _perturb_graph(G1, seed=88)
        b1 = capture_conservation_snapshot(G1)
        a1 = capture_conservation_snapshot(G1p)

        G2 = _make_tnfr_graph(20, "watts_strogatz", seed=77)
        G2p = _perturb_graph(G2, seed=88)
        b2 = capture_conservation_snapshot(G2)
        a2 = capture_conservation_snapshot(G2p)

        r1 = verify_spectral_conservation_balance(b1, a1, G1)
        r2 = verify_spectral_conservation_balance(b2, a2, G2)

        assert np.allclose(r1.mode_residuals, r2.mode_residuals)
        assert abs(r1.parseval_drift - r2.parseval_drift) < 1e-12

    def test_deterministic_sectors(self):
        G1 = _make_tnfr_graph(20, "watts_strogatz", seed=77)
        G2 = _make_tnfr_graph(20, "watts_strogatz", seed=77)

        s1 = decompose_spectral_sectors(G1)
        s2 = decompose_spectral_sectors(G2)

        assert np.allclose(s1.phi_s_spectrum, s2.phi_s_spectrum)
        assert np.allclose(s1.k_phi_spectrum, s2.k_phi_spectrum)


# ===========================================================================
# P3 Deep-Physics Tests — Spectral conservation invariant validation
# ===========================================================================
# These tests exercise spectral conservation under physically meaningful
# conditions rather than just structural (shape/type) checks.
#
# Gap analysis reference (AGENTS.md P3 audit):
#   1. Near-static spectral continuity
#   2. Parseval drift bounded for small perturbations
#   3. Spectral Lyapunov monotonicity under stabilizers
#   4. Operator spectral signatures (Ward identity)
#   5. Multi-step spectral tracking
#   6. Spectral-spatial consistency
# ===========================================================================


def _tiny_perturb_graph(G: nx.Graph, scale: float = 1e-4, seed: int = 123) -> nx.Graph:
    """Create a near-identical copy with O(scale) perturbations."""
    import copy

    G2 = copy.deepcopy(G)
    rng = np.random.default_rng(seed)
    for node in G2.nodes():
        G2.nodes[node]["phase"] += rng.uniform(-scale, scale)
        G2.nodes[node]["delta_nfr"] += rng.uniform(-scale * 0.5, scale * 0.5)
    return G2


class TestNearStaticSpectralContinuity:
    """Gap #1: Near-static evolution produces negligible spectral drift.

    Physics: Spectral quality measures equilibrium proximity (source term
    magnitude), not perturbation sensitivity.  For near-static evolution,
    the correct observables are:
    - Parseval drift → near zero (energy bookkeeping identity)
    - Δρ̂_k → scales with perturbation magnitude
    - Low-band quality ≥ high-band quality (physics: low modes conserve best)
    """

    def test_tiny_perturbation_negligible_parseval_drift(self):
        """Tiny perturbations → Parseval drift ≈ 0."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        G2 = _tiny_perturb_graph(G, scale=1e-5, seed=200)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = verify_spectral_conservation_balance(before, after, G)
        assert (
            result.parseval_drift < 1e-4
        ), f"Near-static Parseval drift {result.parseval_drift:.2e} too large"

    def test_delta_rho_spectrum_scales_with_perturbation(self):
        """Δρ̂_k magnitude scales with perturbation scale."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        before = capture_conservation_snapshot(G)

        norms = []
        for scale in [1e-5, 1e-3, 1e-1]:
            G2 = _tiny_perturb_graph(G, scale=scale, seed=201)
            after = capture_conservation_snapshot(G2)
            result = verify_spectral_conservation_balance(before, after, G)
            delta = result.rho_spectrum_after - result.rho_spectrum_before
            norms.append(float(np.linalg.norm(delta)))

        # Δρ̂ norm must increase monotonically with perturbation scale
        assert (
            norms[0] < norms[1] < norms[2]
        ), f"Δρ̂ norm not monotone with scale: {norms}"

    def test_low_band_quality_geq_high_band(self):
        """Low-frequency modes conserve better than high-frequency modes."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        G2 = _perturb_graph(G, seed=202)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = verify_spectral_conservation_balance(before, after, G)
        bands = result.conservation_quality_by_band
        assert (
            bands["low"] >= bands["high"]
        ), f"Low band quality {bands['low']:.4f} < high band {bands['high']:.4f}"

    @pytest.mark.parametrize("topo", ["watts_strogatz", "barabasi_albert", "grid"])
    def test_low_band_best_cross_topology(self, topo):
        """Low-frequency band conserves best across all topologies."""
        n = 25 if topo == "grid" else 30
        G = _make_tnfr_graph(n, topo, seed=42)
        G2 = _perturb_graph(G, seed=203)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = verify_spectral_conservation_balance(before, after, G)
        bands = result.conservation_quality_by_band
        assert (
            bands["low"] >= bands["high"]
        ), f"{topo}: low={bands['low']:.4f} < high={bands['high']:.4f}"


class TestParsevalDriftBounded:
    """Gap #2: Parseval drift should scale with perturbation magnitude.

    Physics: Parseval identity ‖ρ‖² = Σ|ρ̂_k|² is exact.  Drift between
    snapshots reflects actual structural change, so small perturbations
    must yield proportionally small drift.
    """

    def test_drift_scales_with_perturbation_size(self):
        """Larger perturbation → larger Parseval drift (monotone)."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        before = capture_conservation_snapshot(G)

        drifts = []
        for scale in [1e-5, 1e-3, 1e-1]:
            G2 = _tiny_perturb_graph(G, scale=scale, seed=300)
            after = capture_conservation_snapshot(G2)
            result = verify_spectral_conservation_balance(before, after, G)
            drifts.append(result.parseval_drift)

        # Drift must be monotonically increasing with perturbation scale
        assert (
            drifts[0] < drifts[1] < drifts[2]
        ), f"Parseval drift not monotone with scale: {drifts}"

    def test_small_perturbation_small_drift(self):
        """Parseval drift < 0.01 for O(1e-4) perturbations."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        G2 = _tiny_perturb_graph(G, scale=1e-4, seed=301)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = verify_spectral_conservation_balance(before, after, G)
        assert (
            result.parseval_drift < 0.01
        ), f"Parseval drift {result.parseval_drift:.6f} exceeds 0.01 for tiny perturbation"

    def test_energy_conservation_drift_bounded(self):
        """Per-field spectral energy drifts are bounded for small perturbations."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        G2 = _tiny_perturb_graph(G, scale=1e-4, seed=302)
        before = capture_conservation_snapshot(G)
        after = capture_conservation_snapshot(G2)
        result = compute_spectral_energy_conservation(before, after, G)
        for field in ["phi_s", "grad_phi", "k_phi", "j_phi", "j_dnfr"]:
            drift_val = result[f"{field}_drift"]
            assert drift_val < 0.05, f"Field {field} drift {drift_val:.6f} exceeds 0.05"


class TestSpectralLyapunovMonotonicity:
    """Gap #3: Spectral Lyapunov stability under stabilizer-dominated evolution.

    Physics: Under grammar-compliant sequences (U2), the Lyapunov energy
    E = ½Σ[Φ_s² + |∇φ|² + K_φ² + J_φ² + J_ΔNFR²] should not increase.
    In spectral domain: dE/dt = Σ dE_k/dt ≤ 0 (Structural Conservation
    Theorem §7).

    We test with the Coherence (IL) operator which is the canonical stabilizer.
    """

    def _apply_coherence_to_all(self, G: nx.Graph) -> None:
        """Apply IL (Coherence) to every node — pure stabilizer sequence."""
        from tnfr.operators.definitions import Coherence

        coherence = Coherence()
        for node in G.nodes():
            try:
                coherence(G, node)
            except Exception:
                pass  # Some nodes may not support IL if νf=0

    def test_stabilizer_does_not_increase_total_energy(self):
        """Total Lyapunov derivative ≤ 0 after IL application."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        before = capture_conservation_snapshot(G)
        self._apply_coherence_to_all(G)
        after = capture_conservation_snapshot(G)
        result = compute_spectral_lyapunov(before, after, G)
        assert (
            result.total_derivative <= 0.0 or result.is_spectrally_stable
        ), f"Stabilizer increased spectral energy: dE/dt={result.total_derivative:.6f}"

    def test_stabilizer_high_stable_fraction(self):
        """After IL, most modes should be stable (dE_k/dt ≤ 0)."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        before = capture_conservation_snapshot(G)
        self._apply_coherence_to_all(G)
        after = capture_conservation_snapshot(G)
        result = compute_spectral_lyapunov(before, after, G)
        assert (
            result.stable_fraction >= 0.5
        ), f"Stabilizer stable_fraction={result.stable_fraction:.3f}, expected ≥ 0.5"


class TestOperatorSpectralSignatures:
    """Gap #4: Canonical operators produce predictable spectral signatures.

    Physics: Each operator has a characteristic spectral Ward identity.
    - IL (Coherence/stabilizer): Energy decreasing (dissipative character)
    - OZ (Dissonance/destabilizer): Energy increasing (injective character)
    - SHA (Silence): Near-zero energy change (conservative character)
    """

    @staticmethod
    def _fresh_graph(seed: int = 42) -> nx.Graph:
        return _make_tnfr_graph(30, "watts_strogatz", seed=seed)

    def test_coherence_ward_has_valid_character(self):
        """IL should produce a valid spectral character classification."""
        from tnfr.operators.definitions import Coherence

        G = self._fresh_graph()
        before = capture_conservation_snapshot(G)
        Coherence()(G, list(G.nodes())[0])
        after = capture_conservation_snapshot(G)
        ward = compute_spectral_ward_identity(before, after, "Coherence", G)
        # IL's primary contract is C(t) monotonicity, not spectral charge energy
        # monotonicity.  Phase redistribution can appear injective in ρ̂ even
        # as coherence increases.  We verify the Ward identity classifies correctly.
        assert ward.spectral_character in (
            "dissipative",
            "conservative",
            "injective",
        ), (
            f"Coherence Ward identity: {ward.spectral_character}; "
            "expected a valid spectral character"
        )
        # But the affected band should be meaningful (not empty/missing)
        assert ward.affected_band in ("low", "mid", "high")

    def test_dissonance_ward_injective_or_conservative(self):
        """OZ should have injective or conservative spectral character."""
        from tnfr.operators.definitions import Dissonance

        G = self._fresh_graph()
        before = capture_conservation_snapshot(G)
        Dissonance()(G, list(G.nodes())[0])
        after = capture_conservation_snapshot(G)
        ward = compute_spectral_ward_identity(before, after, "Dissonance", G)
        # OZ destabilizes: should inject energy or be conservative
        assert ward.spectral_character in ("injective", "conservative"), (
            f"Dissonance Ward identity: {ward.spectral_character}; "
            "expected injective or conservative"
        )

    def test_silence_ward_conservative(self):
        """SHA should have (near-)conservative spectral character."""
        from tnfr.operators.definitions import Silence

        G = self._fresh_graph()
        before = capture_conservation_snapshot(G)
        Silence()(G, list(G.nodes())[0])
        after = capture_conservation_snapshot(G)
        ward = compute_spectral_ward_identity(before, after, "Silence", G)
        # SHA freezes evolution: near-zero energy change
        assert abs(ward.total_spectral_energy_change) < 1.0, (
            f"Silence energy change {ward.total_spectral_energy_change:.4f} "
            "unexpectedly large"
        )

    def test_ward_operator_name_preserved(self):
        """Ward identity records the correct operator name."""
        from tnfr.operators.definitions import Emission

        G = self._fresh_graph()
        # Set node to vacuum for Emission
        node = list(G.nodes())[0]
        G.nodes[node]["EPI"] = 0.0
        G.nodes[node]["nu_f"] = 1.0
        G.nodes[node]["delta_nfr"] = 0.0
        before = capture_conservation_snapshot(G)
        Emission()(G, node)
        after = capture_conservation_snapshot(G)
        ward = compute_spectral_ward_identity(before, after, "Emission", G)
        assert ward.operator_name == "Emission"


class TestMultiStepSpectralTracking:
    """Gap #5: Spectral conservation quality across a multi-step sequence.

    Physics: A grammar-compliant operator sequence should maintain or
    improve spectral quality over successive steps.  Quality degradation
    signals structural fragmentation.
    """

    def test_multi_step_quality_does_not_collapse(self):
        """5-step perturb-and-measure: quality stays positive (non-degenerate)."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        qualities = []
        for step_seed in range(100, 105):
            before = capture_conservation_snapshot(G)
            G = _perturb_graph(G, seed=step_seed)
            after = capture_conservation_snapshot(G)
            result = verify_spectral_conservation_balance(before, after, G)
            qualities.append(result.overall_spectral_quality)

        # Quality must remain strictly positive (system not degenerate)
        for i, q in enumerate(qualities):
            assert q > 0.0, f"Step {i}: spectral quality collapsed to {q:.4f}"
        # Low-band quality should stay above high-band across steps
        for step_seed in range(100, 105):
            G_tmp = _make_tnfr_graph(30, "watts_strogatz", seed=42)
            before = capture_conservation_snapshot(G_tmp)
            G_tmp = _perturb_graph(G_tmp, seed=step_seed)
            after = capture_conservation_snapshot(G_tmp)
            result = verify_spectral_conservation_balance(before, after, G_tmp)
            bands = result.conservation_quality_by_band
            assert (
                bands["low"] >= bands["high"]
            ), f"Step {step_seed}: low={bands['low']:.4f} < high={bands['high']:.4f}"

    def test_parseval_drift_bounded_across_steps(self):
        """Parseval drift stays bounded across multiple perturbation steps."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        drifts = []
        for step_seed in range(200, 208):
            before = capture_conservation_snapshot(G)
            G = _perturb_graph(G, seed=step_seed)
            after = capture_conservation_snapshot(G)
            result = verify_spectral_conservation_balance(before, after, G)
            drifts.append(result.parseval_drift)

        # No single step should produce extreme Parseval drift
        for i, d in enumerate(drifts):
            assert d < 1.0, f"Step {i}: Parseval drift {d:.4f} exceeds 1.0"

    def test_multi_step_lyapunov_energies_finite(self):
        """Spectral Lyapunov energies remain finite across steps."""
        G = _make_tnfr_graph(25, "watts_strogatz", seed=42)
        for step_seed in range(300, 305):
            before = capture_conservation_snapshot(G)
            G = _perturb_graph(G, seed=step_seed)
            after = capture_conservation_snapshot(G)
            result = compute_spectral_lyapunov(before, after, G)
            assert np.all(
                np.isfinite(result.mode_energies_after)
            ), f"Step {step_seed}: non-finite spectral Lyapunov energies"
            assert np.isfinite(
                result.total_derivative
            ), f"Step {step_seed}: non-finite total Lyapunov derivative"


class TestSpectralSpatialConsistency:
    """Gap #6: Spectral and spatial conservation quality must correlate.

    Physics: The spectral continuity theorem is derived via GFT of the
    spatial continuity equation.  Both views measure the same conservation
    law, so their quality metrics should agree directionally.
    """

    def test_parseval_drift_correlates_with_spatial_charge_drift(self):
        """Parseval drift and spatial charge drift both increase with perturbation."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        spatial_drifts = []
        spectral_drifts = []

        for scale in [1e-5, 1e-3, 1e-1]:
            G2 = _tiny_perturb_graph(G, scale=scale, seed=400)
            before = capture_conservation_snapshot(G)
            after = capture_conservation_snapshot(G2)

            spatial = verify_conservation_balance(before, after)
            spectral = verify_spectral_conservation_balance(before, after, G)

            spatial_drifts.append(spatial.charge_drift)
            spectral_drifts.append(spectral.parseval_drift)

        # Both should increase monotonically with perturbation scale
        assert (
            spatial_drifts[0] < spatial_drifts[2]
        ), f"Spatial charge drift not increasing: {spatial_drifts}"
        assert (
            spectral_drifts[0] < spectral_drifts[2]
        ), f"Spectral Parseval drift not increasing: {spectral_drifts}"

    def test_large_perturbation_both_parseval_and_spatial_increase(self):
        """Large perturbation produces larger drift in both domains."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        G_small = _tiny_perturb_graph(G, scale=1e-5, seed=401)
        G_large = _perturb_graph(G, seed=402)

        before = capture_conservation_snapshot(G)
        after_small = capture_conservation_snapshot(G_small)
        after_large = capture_conservation_snapshot(G_large)

        spectral_small = verify_spectral_conservation_balance(before, after_small, G)
        spectral_large = verify_spectral_conservation_balance(before, after_large, G)

        # Parseval drift: small perturbation → smaller drift
        assert spectral_small.parseval_drift < spectral_large.parseval_drift, (
            f"Parseval: small={spectral_small.parseval_drift:.6f} vs "
            f"large={spectral_large.parseval_drift:.6f}"
        )

    def test_spectral_energy_conservation_consistent_with_spatial(self):
        """Total spectral energy drift (Parseval) correlates with spatial RMS."""
        G = _make_tnfr_graph(30, "watts_strogatz", seed=42)
        spatial_rms_vals = []
        spectral_total_drifts = []

        for scale in [1e-5, 1e-3, 1e-1]:
            G2 = _tiny_perturb_graph(G, scale=scale, seed=403)
            before = capture_conservation_snapshot(G)
            after = capture_conservation_snapshot(G2)

            spatial = verify_conservation_balance(before, after)
            energy = compute_spectral_energy_conservation(before, after, G)

            spatial_rms_vals.append(spatial.rms_residual)
            spectral_total_drifts.append(energy["total_drift"])

        # Both should increase with perturbation: smallest < largest
        assert (
            spatial_rms_vals[0] < spatial_rms_vals[2]
        ), f"Spatial RMS not increasing: {spatial_rms_vals}"
        assert (
            spectral_total_drifts[0] < spectral_total_drifts[2]
        ), f"Spectral total drift not increasing: {spectral_total_drifts}"