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Resonant Fractal Nature Theory — a mathematical framework for coherent patterns on graph-coupled networks.

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© 2026 TNFR project — MIT licensed.DOI 10.5281/zenodo.17602860
docs
grammar
PHYSICS_VERIFICATION.md
API_CONTRACTS.mdCANONICAL_OZ_SEQUENCES.mdEMPIRICAL_CONFRONTATION_EEG.mdREADME.mdSTRUCTURAL_FIELDS_TETRAD.mdSTRUCTURAL_INTERFACE_THEORY.md
theory
APPLIED_STRUCTURAL_ANALYSIS.mdCATALOG_TYPE_HYGIENE_PROGRAMME.mdDISSIPATIVE_AND_OPEN_SYSTEMS.mdEMERGENT_ONTOLOGY.mdEXTENDED_FIELDS_AND_DERIVED_QUANTITIES.mdFUNDAMENTAL_THEORY.mdGAUGE_SYMMETRY_AND_UNIFICATION.mdGLOSSARY.mdMATHEMATICAL_DYNAMICS_BASIS.mdMINIMAL_STRUCTURAL_DEGREES.mdNUCLEUS_A_PRIME_LADDER_ATLAS.mdNUCLEUS_B_EQUIVARIANCE_OBSTRUCTIONS.mdPHYSICAL_REGIME_CORRESPONDENCES.mdREADME.mdREMESH_INFINITY_DERIVATION.mdSTRUCTURAL_CONSERVATION_THEOREM.mdSTRUCTURAL_OPERATORS.mdSTRUCTURAL_STABILITY_AND_DYNAMICS.mdTNFR_BSD_RESEARCH_NOTES.mdTNFR_HODGE_RESEARCH_NOTES.mdTNFR_NAVIER_STOKES_RESEARCH_NOTES.mdTNFR_NUMBER_THEORY.mdTNFR_P_VS_NP_RESEARCH_NOTES.mdTNFR_RIEMANN_RESEARCH_NOTES.mdTNFR_VARIATIONAL_PRINCIPLE.mdTNFR_YANG_MILLS_RESEARCH_NOTES.mdTNFR.pdfUNIFIED_GRAMMAR_RULES.md
factorization-lab
analysis
analyze_patterns.pycertificate_manifest.py
benchmarks
benchmark_analysis.pybenchmark_expansion_suite.pyfull_spectrum_factorization.pypaley_gap_extended.pypaley_gap_smoke.pytest_benchmark_suite.py
demos
experiment_contexts
exp_0b1663cd19b7.jsonexp_0bf0054b7474.jsonexp_75a4c8ca616a.jsonexp_848ee0fd1857.jsonexp_f6fe00562193.jsonexp_fdf3da424e1e.json
failure_telemetry_batch.pyfeedback_integration_demo.pyintegration_demo_snapshots.dbseed_management_integration_demo.pysnapshot_integration_demo.pytrajectory_143.jsontrajectory_77.jsontrajectory_89.jsontrajectory_91.jsontrajectory_97.json
docs
FACTORING_PLAYBOOK.mdFALSE_POSITIVE_TEST_SUITE.mdOPERATOR_CERTIFICATES.mdROADMAP.mdSPECTRAL_ROUTE.md
experiment_contexts
exp_cebe1d9e7d8e.json
notebooks
spectral_history.ipynb
scripts
run_false_positive_tests.py
tests
run_false_positive_test_suite.pytest_cli.pytest_false_positive_methodology.pytest_false_positive_verifier.pytest_feedback_integration.pytest_partitioning.pytest_seed_management.pytest_self_opt_support.pytest_snapshot_system.pytest_spectral_paley.pytest_verification_robustness.py
tnfr_factorization
__init__.pyapi.pycli.pyfailure_telemetry.pyfeedback_adapter.pyfeedback_integration.pypartitioning.pyself_opt_support.pyspectral_paley.py
demo_snapshots.dbLICENSE_SNAPSHOT.mdPACKAGE_SUMMARY.mdREADME.mdseed_management.pysnapshot_system.pytest_certificate_hashing.pytest_installation.pyverification_trajectory_77.json
benchmarks
analyze_tetrad_universality.pyb0star_alpha_canonical_product_graphs.pybenchmark_optimization_tracks.pybenchmark_utils.pyboundary_vibration.pybridge_primes_riemann.pychiral_involution.pycli_utils.pycoherence_projector_sense_index.pycommutant_bridge.pycomposition_arithmetic.pyconfinement_zones_test.pyconservation_law_validation.pydirected_paley_bridge.pyemergent_arithmetic_pulse.pyemergent_atom_dynamics.pyemergent_atomic_shells.pyemergent_base_dimension.pyemergent_dimension_dynamics.pyemergent_fractal_pulse.pyemergent_fractal_simplex_dimension.pyemergent_integers_symmetry.pyemergent_musical_nfr.pyemergent_nfr_geometry.pyemergent_nfr_where.pyemergent_rationals.pyemergent_rhythm.pyemergent_screening.pyemergent_shell_cardinals.pyemergent_shell_ordering.pyemergent_simplex_dimension.pyemergent_substrate_symmetry.pyequivariance_wall.pyexternal_phase_gate_validation.pyfield_methods_battery.pygolden_residue_remesh_bridge.pyintegrated_force_regime_study.pyinverse_spectrum_to_symmetry.pyk_phi_safety_demo.pykuramoto_farey_bridge.pymissing_piece_bridge.pymultichannel_interface_benchmark.pynavier_stokes_recipe_bridge.pynodal_propagator_residue_bridge.pyns_moment_hierarchy_cascade.pyoperational_irreducibility.pypaley_bridge.pyphase_curvature_investigation.pyphase_wall.pyphi_s_confinement_investigation.pyprimes_as_consequence.pypulse_phase_coherence_budget.pyREADME.mdremesh_infinity_riemann_baseline.pyremesh_infinity_riemann_composed.pyremesh_infinity_riemann_modified_graph.pyremesh_infinity_riemann_operator.pyremesh_infinity_riemann_spectral_basis.pyremesh_infinity_riemann_spectral_robustness.pyremesh_infinity_riemann_spectral.pyresidue_phase_vs_riemann.pystructural_interface_benchmark.pytemporal_interface_benchmark.pytetrad_results_aggregate.pyu2_destabilization_irreversibility.pyuniversality_clusters.pyxi_c_fast_experiment.py
primality-test
benchmarks
comprehensive_benchmark.py
docs
ADVANCED_INTEGRATION.mdmathematical_foundation.mdperformance_analysis.md
examples
advanced_examples.pybasic_usage.py
tnfr_primality
__init__.py__main__.pyadvanced_cli.pyadvanced_core.pycli.pyconstants.pycore.pyoptimized.py
MANIFEST.inPACKAGE_SUMMARY.mdREADME.mdRELEASE_NOTES_v1.0.mdsetup.pytest_installation.py
tests
core_physics
__init__.pytest_conservation_laws.pytest_delta_nfr_computation_paths.pytest_delta_nfr.pytest_dispersion_coherence_sign_invariance.pytest_emergent_constants_guard.pytest_lyapunov_operators.pytest_nodal_equation.pytest_structural_triad.py
data
replay_manifests
sample_run
_manifest_summary.json_manifest.json_partition_files.txt.gz
self_opt_validation
seed_alpha
paley.json
seed_beta
integration.json
seed_gamma
unknown.json
self_optimization
test_run
partitioned
test_run
test_run_p0.jsontest_run_p1.json
_manifest_summary.json_manifest.json
engines
test_pattern_discovery_manifest.pytest_self_optimization_engine.py
mathematics
__init__.pytest_autodiff.pytest_backends.pytest_dissipative_dynamics.pytest_epi.pytest_factory_patterns.pytest_metrics.pytest_navier_stokes_refounded.pytest_number_theory_canonical.pytest_operators.pytest_residue_networks.pytest_riemann_nodal_pulse.pytest_riemann_pulse_coherence.pytest_spaces.pytest_transforms.pytest_validator.py
operators
test_canonical_operators_modern.pytest_grammar_canon.pytest_grammar_canonical_consistency.pytest_grammar_dynamics.pytest_operator_contracts.pytest_operator_strategies.py
parallel
test_fractal_partition_manifest.py
physics
test_conservation_gauge_unification.pytest_dissipative_conservation.pytest_emergent_chemistry.pytest_field_cache_invalidation.pytest_gauge.pytest_phase_transition.pytest_signatures.pytest_spectral_conservation.pytest_structural_diffusion.pytest_structural_integrity.pytest_symplectic_substrate.pytest_tetrad_bounds.pytest_variational.pytest_yang_mills_closure.pytest_yang_mills_derivability.pytest_yang_mills_scaling.pytest_yang_mills_structural_gap.pytest_yang_mills_u6_sweep.py
scripts
test_run_self_opt_validation.pytest_run_self_optimization.py
sdk
__init__.pytest_simple_advanced.py
__init__.pyconftest.pyREADME.mdtest_breast_cancer_phase_gate_demo.pytest_classical_mechanics.pytest_distributed_fft.pytest_external_phase_gate_validation.pytest_factorization_entrypoint.pytest_multichannel_interface.pytest_nodal_optimizer.pytest_phase_gate_api.pytest_replay_register_manifest.pytest_signal_confrontation.pytest_structural_interface_api.pytest_structural_interface_baselines.pytest_structural_interface_benchmark.pytest_temporal_interface.pytest_vectorized_coherence_length_regression.pytest_wine_quality_phase_gate_demo.pyutils.py
examples
01_foundations
01_hello_world.py02_musical_resonance.py03_network_formation.py04_operator_sequences.py05_coherence_evolution.py06_network_topologies.py07_phase_transitions.py08_emergent_phenomena.py09_visualization_suite.py10_simplified_sdk_showcase.py
02_physics_regimes
11_classical_limit_comparison.py115_operator_contract_audit.py12_classical_mechanics_demo.py13_quantum_mechanics_demo.py14_uncertainty_and_interference.py15_train_crossing_demo.py17_conservation_law_demo.py26_gauge_structure_demo.py27_variational_principle_demo.py28_dissipative_systems_demo.py29_lyapunov_stability_demo.py30_self_optimization_demo.py31_mathematical_constants_basis.py33_complex_field_unification.py34_conservation_protocol_suite.py35_tetrad_irreducibility.py36_grammar_violation_detector.py37_operator_tetrad_synergy.py38_grammar_energy_landscape.py39_nodal_equation_decomposition.py
03_riemann_zeta
157_nodal_pulse_phase_attack.py41_von_mangoldt_zeta_demo.py42_riemann_zeros_as_resonances.py43_prime_ladder_hamiltonian_demo.py44_weil_explicit_formula_demo.py45_li_keiper_demo.py46_weil_tnfr_positivity_demo.py47_alpha_sweep_demo.py48_admissible_family_sweep_demo.py49_nodeaware_gauge_sweep_demo.py50_uniform_coercivity_demo.py51_adaptive_coercivity_demo.py52_paley_gap_coercivity_demo.py53_lyapunov_spectral_positivity_demo.py54_hilbert_polya_demo.py55_structural_zero_density_demo.py56_spectral_emergence_demo.py57_admissible_rescaling_demo.py58_oscillatory_correction_demo.py
04_riemann_L_twisted
59_dirichlet_l_function_demo.py60_dirichlet_l_continuation_demo.py61_dirichlet_l_hamiltonian_demo.py62_dirichlet_weil_explicit_formula_demo.py63_dirichlet_li_keiper_demo.py64_twisted_weil_positivity_demo.py65_twisted_alpha_sweep_demo.py66_twisted_admissible_family_sweep_demo.py67_twisted_nodeaware_gauge_sweep_demo.py68_twisted_hermite_family_demo.py69_twisted_coercivity_uniform_demo.py70_twisted_paley_gap_coercivity_demo.py71_twisted_lyapunov_spectral_demo.py72_twisted_hilbert_polya_demo.py73_twisted_structural_zero_density_demo.py74_twisted_spectral_emergence_demo.py75_twisted_admissible_rescaling_demo.py76_twisted_oscillatory_correction_demo.py
05_type_hygiene
77_remesh_infinity_residue_split_demo.py78_nuf_type_signature_demo.py79_epi_type_signature_demo.py80_phi_type_signature_demo.py81_dnfr_type_signature_demo.py82_remesh_window_type_signature_demo.py83_delta_phi_max_type_signature_demo.py84_coupling_weights_type_signature_demo.py85_tetrad_closure_signature_demo.py86_currents_closure_signature_demo.py87_aggregates_closure_signature_demo.py88_urules_consistency_signature_demo.py89_operator_catalog_discipline_signature_demo.py
06_navier_stokes
158_navier_stokes_two_face_refounded.py
07_number_theory
100_prime_families_orbits.py101_numbers_as_coupled_network.py102_nodal_flow_primes_equilibria.py116_nuf_emergent_prime_visibility.py146_primality_grammatical_inertness.py147_numbers_as_free_monoid_words.py148_capacity_arm_carries_von_mangoldt.py149_p14_is_the_capacity_arm_operator.py153_structural_frequency_rank_cyclotomy.py40_arithmetic_number_theory.py94_generative_number_construction.py95_primes_from_spectral_waves.py96_spectral_vibration_of_coherence.py97_goldbach_additive_multiplicative.pyemergent_chemistry_particles_demo.py
08_emergent_geometry
103_emergent_substrate_meets_riemann.py106_per_node_polarization_geometry.py107_orthogonal_structure_emergent_geometry.py108_emergent_field_generating_structure.py112_structure_predicts_coherence_flow.py113_overdamped_projection_bridge.py114_substrate_conserved_quantities.py117_emergent_geometry_residue_graph.py118_emergent_vs_classical_operator.py119_phase_sector_directed_residue.py120_symmetry_wall_substrate_vs_spectrum.py121_canonical_symmetry_break_negative.py122_factorization_phase_sector.py123_symmetry_sector_decomposition.py124_emergent_metric_fractal_consistency.py125_node_is_the_emergent_substrate.py126_two_layers_base_fiber.py127_base_is_emergent_not_imposed.py128_base_substrate_coemergence.py129_spectral_gap_base_fiber_clock.py130_operators_break_substrate_charges.py131_coemergent_loop_convergence.py132_geometric_phase_holonomy.py133_psi_topological_defects.py134_spectral_dimension_heat_kernel.py135_arrow_of_time_h_theorem.py136_heat_kernel_coefficients.py137_synchronization_transition.py138_structure_frequency_synchronization.py139_grammar_formal_language.py140_grammar_automaton.py141_grammar_rule_decomposition.py142_grammar_operator_quotient.py143_glyphic_function_sublanguage.py144_branching_combinator.py145_syntactic_monoid_starfree.py150_emergent_grammatical_pattern_parry.py151_grammar_in_emergent_geometry.py152_operator_contract_tetrahedron.py154_conductor_annotated_qr_spectrum.py155_ontological_position_of_numbers.py156_emergence_directness_law.py98_emergent_symplectic_substrate.py99_structural_diffusion.pyunified_fields_showcase.py
09_millennium
109_p_vs_np_coherence_synthesis.py110_bsd_rank_structural_pressure.py111_hodge_discrete_and_honest_gap.py
10_applications
159_empirical_confrontation_pipeline.py90_phase_gate_monitor_demo.py91_breast_cancer_phase_gate_demo.py92_wine_quality_phase_gate_demo.py93_structural_interface_demo.pypytorch_cuda_demo.py
README.md
scripts
replay
__init__.pyregister_manifest.py
__init__.pyREADME.mdrebuild_failure_manifest.pyrun_reproducible_benchmarks.pyrun_self_opt_validation.pyrun_self_optimization.pytnfr_is_prime.pyvalidate_conservation_law.pyverify_internal_references.py
src
core
__init__.pyevaluation.py
tnfr
backends
__init__.pyjax_backend.pynumpy_backend.pyoptimized_numpy.pyREADME.mdtorch_backend.py
cli
__init__.py__init__.pyiarguments.pyarguments.pyiexecution.pyexecution.pyiinteractive_validator.pyREADME.mdutils.pyutils.pyi
compat
__init__.pydataclass.pyjsonschema_stub.pymatplotlib_stub.pynumpy_stub.pyREADME.md
config
__init__.py__init__.pyiconstants.pyconstants.pyidefaults_core.pydefaults_init.pydefaults_metric.pydefaults.pyfeature_flags.pyfeature_flags.pyiglyph_constants.pyoperator_names.pyoperator_names.pyiphysics_derivation.pyprecision_modes.pypresets.pypresets.pyiREADME.mdsecurity.pythresholds.pytnfr_config.py
constants
__init__.py__init__.pyialiases.pyaliases.pyicanonical.pymetric.pymetric.pyioperational.py
core
__init__.pycontainer.pydefault_implementations.pyexceptions.pyinterfaces.pyREADME.md
dynamics
__init__.py__init__.pyiadaptation.pyadaptation.pyiadaptive_sequences.pyadaptive_sequences.pyiadelic.pyadvanced_cache_optimizer.pyadvanced_fft_arithmetic.pyaliases.pyaliases.pyibifurcation.pycache_aware_fft_engine.pycanonical.pycanonical.pyicomputational_hub.pycoordination.pycoordination.pyidistributed_fft.pydnfr.pydnfr.pyidynamic_limits.pyemergent_centralization.pyemergent_integration_engine.pyfeedback.pyfeedback.pyifft_backend.pyfft_cache_coordinator.pyfft_dispatchers.pyfft_engine.pyfft_workers.pyfused_dnfr.pyhomeostasis.pyhomeostasis.pyiintegrators.pyintegrators.pyilearning.pylearning.pyimetabolism.pymulti_modal_cache.pynbody_tnfr.pynbody.pynodal_optimizer.pyoptimization_orchestrator.pypropagation.pyREADME.mdruntime.pyruntime.pyisampling.pysampling.pyiselectors.pyselectors.pyiself_optimizing_engine.pyspectral_structural_fusion.pystructural_cache.pystructural_clip.pysymplectic.pyunified_backend.pyunified_mathematical_cache_orchestrator.py
engines
computation
__init__.pyfft_engine.pyunified_fft_engine.pyunified_gpu_system.py
constants
__init__.pycanonical.pyoperational.py
integration
__init__.pyemergent_integration.py
pattern_discovery
__init__.pymathematical_patterns.pymulti_modal_cache.py
self_optimization
__init__.pyengine.py
__init__.pyREADME.md
errors
__init__.pycontextual.py
factorization
__init__.py
flatten
README.md
gamma
README.md
glyph_history
README.md
glyph_runtime
README.md
immutable
README.md
initialization
README.md
io
README.md
math
__init__.pyfields_symbolic.pygrammar_validators.pyoptimizer.pyREADME.mdsymbolic.py
mathematics
__init__.pybackend.pybackend.pyidynamics.pydynamics.pyiepi.pyepi.pyigenerators.pygenerators.pyiliouville.pymetrics.pymetrics.pyinumber_theory.pyoperators_factory.pyoperators_factory.pyioperators.pyoperators.pyioptimized_primality.pyprojection.pyprojection.pyiREADME.mdruntime.pyruntime.pyispaces.pyspaces.pyispectral.pytransforms.pytransforms.pyiunified_cache.pyunified_numerical.pyzeta.py
metrics
__init__.py__init__.pyibuffer_cache.pybuffer_cache.pyicache_utils.pycoherence.pycoherence.pyicommon.pycommon.pyicore.pycore.pyidiagnosis.pydiagnosis.pyiemergence.pyexport.pyexport.pyiglyph_timing.pyglyph_timing.pyilearning_metrics.pylearning_metrics.pyilocal_coherence.pyphase_coherence.pyphase_compatibility.pyREADME.mdreporting.pyreporting.pyisense_index.pysense_index.pyitelemetry.pytetrad.pytrig_cache.pytrig_cache.pyitrig.pytrig.pyi
multiscale
__init__.pyhierarchical.pyREADME.md
navier_stokes
__init__.pyconservative_face.pyoperator.py
node
README.md
observers
README.md
operators
network_analysis
__init__.pysource_detection.py
postconditions
__init__.pymutation.py
preconditions
__init__.pycoherence.pydissonance.pyemission.pymutation.pyreception.pyresonance.py
strategies
__init__.pydefaults.pygpu_strategies.pystrategy.py
__init__.py__init__.pyialgebra.pycanonical_patterns.pycascade.pycoherence.pycontraction.pycoupling.pycycle_detection.pydefinitions_base.pydefinitions.pydefinitions.pyidissonance.pyemission.pyexpansion.pygrammar_application.pygrammar_canon.pygrammar_context.pygrammar_core.pygrammar_dynamics.pygrammar_error_factory.pygrammar_memoization.pygrammar_patterns.pygrammar_telemetry.pygrammar_types.pygrammar_u6.pygrammar_validate.pygrammar.pygrammar.pyihamiltonian.pyhealth_analyzer.pyintrospection.pyjitter.pyjitter.pyilifecycle.pymetabolism.pymetrics_basic.pymetrics_core.pymetrics_network.pymetrics_structural.pymetrics_u6.pymetrics.pymutation.pynodal_equation.pyoperator_contracts.pypattern_detection.pypatterns.pyREADME.mdreception.pyrecursivity.pyregistry.pyregistry.pyiremesh.pyremesh.pyiresonance.pyself_organization.pysilence.pystructural_units.pytransition.py
parallel
__init__.pyauto_scaler.pydistributed.pyengine.pymonitoring.pypartitioner.pyREADME.md
performance
guardrails.py
physics
__init__.py_helpers.pycalibration.pycanonical.pycell.pyclassical_mechanics.pyconservation_gauge_unification.pyconservation.pydissipative_conservation.pyemergent_chemistry.pyemergent_particles.pyextended.pyfields.pygauge.pyintegrity.pyinteractions.pylife.pylyapunov.pypatterns.pyphase_transition.pyquantum_mechanics.pyREADME.mdsignatures.pyspectral_conservation.pyspectral_metrics.pystructural_diffusion.pysymplectic_substrate.pytelemetry.pyunified.pyvariational.pyvectorized_ops.py
primality
__init__.py
recipes
__init__.pycookbook.pyREADME.md
riemann
__init__.pyadmissible_family_sweep.pyadmissible_rescaling.pyaggregates_closure_signature.pyalpha_sweep.pyanalytic_continuation_dirichlet.pyanalytic_continuation.pycoercivity_uniform.pycoupling_weights_type_signature.pycurrents_closure_signature.pydelta_phi_max_type_signature.pydirichlet_l.pydnfr_type_signature.pyepi_type_signature.pyhilbert_polya.pyli_keiper.pylyapunov_spectral_positivity.pynodal_pulse.pynodeaware_gauge_sweep.pynuf_type_signature.pyoperator_catalog_discipline_signature.pyoperator.pyoscillatory_correction.pypaley_gap_coercivity.pyphi_type_signature.pyprime_ladder_hamiltonian.pypulse_coherence.pyremesh_infinity_residue_split.pyremesh_window_type_signature.pyspectral_emergence.pystructural_zero_density.pytelemetry.pytetrad_closure_signature.pytwisted_admissible_family_sweep.pytwisted_admissible_rescaling.pytwisted_alpha_sweep.pytwisted_coercivity_uniform.pytwisted_hermite_family.pytwisted_hilbert_polya.pytwisted_li_keiper.pytwisted_lyapunov_spectral_positivity.pytwisted_nodeaware_gauge_sweep.pytwisted_oscillatory_correction.pytwisted_paley_gap_coercivity.pytwisted_prime_ladder_hamiltonian.pytwisted_spectral_emergence.pytwisted_structural_zero_density.pytwisted_weil_explicit_formula.pytwisted_weil_positivity.pyurules_consistency_signature.pyvon_mangoldt.pyweil_explicit_formula.pyweil_positivity.py
schemas
__init__.pygrammar.jsonREADME.md
sdk
__init__.py__init__.pyiadaptive_system.pyadaptive_system.pyibuilders.pybuilders.pyifluent.pyfluent.pyiREADME.mdself_opt.pysimple.pytemplates.pytemplates.pyiutils.py
security
__init__.pycrypto.pydatabase.pyREADME.mdsubprocess.pyvalidation.py
sequencing
__init__.pypatterns.pyREADME.md
services
__init__.pyorchestrator.pyREADME.md
sparse
__init__.pyREADME.mdrepresentations.py
structural
README.md
telemetry
__init__.pycache_metrics.pycache_metrics.pyiconstants.pynu_f.pynu_f.pyiREADME.mdunified_telemetry_system.pyverbosity.pyverbosity.pyi
tools
__init__.pydomain_templates.pyREADME.mdsequence_generator.pytnfr_is_prime_cli_optimized.pytnfr_is_prime_cli.py
topology
__init__.pyasymmetry.pyREADME.md
utils
cache_layers.pycache.pycache.pyicallbacks.pycallbacks.pyichunks.pychunks.pyidata.pydata.pyifast_diameter.pygraph.pygraph.pyiinit.pyinit.pyiio.pyio.pyinumeric.pynumeric.pyiREADME.mdtopology.pyunified_cache.py
validation
__init__.py__init__.pyiaggregator.pybase.pycompatibility.pycompatibility.pyiconfig.pygraph.pygraph.pyihealth.pyinput_validation.pyinterface_baselines.pyinvariants.pymultichannel_interface.pyphase_gate.pyREADME.mdrules.pyrules.pyiruntime.pyruntime.pyisequence_validator.pysignal_confrontation.pysoft_filters.pysoft_filters.pyispectral.pyspectral.pyistructural_interface.pytemporal_interface.pyunified_validation_system.pyvalidator.pywindow.pywindow.pyi
visualization
__init__.pycascade_viz.pyhierarchy.pyREADME.mdsequence_plotter.py
yang_mills
__init__.pyclosure.pyderivability.pyscaling.pystructural_gap.pyu6_sweep.py
__init__.py__init__.pyi_compat.py_version.py_version.pyialias.pyalias.pyibackend_config.pycache.pycache.pyiexecution.pyexecution.pyiflatten.pyflatten.pyigamma.pygamma.pyiglyph_history.pyglyph_history.pyiglyph_runtime.pyglyph_runtime.pyiimmutable.pyimmutable.pyiinitialization.pyinitialization.pyiio.pyio.pyilocking.pylocking.pyinode.pynode.pyiobservers.pyobservers.pyiontosim.pyontosim.pyipy.typedrng.pyrng.pyisecure_config.pyselector.pyselector.pyisense.pysense.pyistructural.pystructural.pyitokens.pytokens.pyitrace.pytrace.pyitypes.pytypes.pyiunits.pyunits.pyi
tetrad_evaluator.py
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FILE: tests/physics/test_structural_integrity.py

test_structural_integrity.py

Tests for TNFR Structural Integrity Monitor — closed-loop conservation enforcement.

Validates the real-time conservation enforcement bridge between: conservation.py → integrity.py → definitions_base.py → self_optimizing_engine.py

Tests verify:

  1. MonitorMode semantics: OFF, OBSERVE, ENFORCE
  2. Postcondition evaluation for canonical operators
  3. Conservation quality assessment via snapshots
  4. Lyapunov stability detection (dE/dt ≤ 0)
  5. Noether charge drift tracking
  6. Grammar violation detection from conservation residuals
  7. IntegritySummary running statistics
  8. StructuralIntegrityViolation raised in ENFORCE mode
  9. Corrective suggestions generation
  10. feedback_vector() output for self-optimization engine
  11. Integration with operator execution (definitions_base.py wiring)
  12. Backward compatibility: no overhead when monitor is not attached

Source Code

python
"""Tests for TNFR Structural Integrity Monitor — closed-loop conservation enforcement.

Validates the real-time conservation enforcement bridge between:
  conservation.py → integrity.py → definitions_base.py → self_optimizing_engine.py

Tests verify:
1. MonitorMode semantics: OFF, OBSERVE, ENFORCE
2. Postcondition evaluation for canonical operators
3. Conservation quality assessment via snapshots
4. Lyapunov stability detection (dE/dt ≤ 0)
5. Noether charge drift tracking
6. Grammar violation detection from conservation residuals
7. IntegritySummary running statistics
8. StructuralIntegrityViolation raised in ENFORCE mode
9. Corrective suggestions generation
10. feedback_vector() output for self-optimization engine
11. Integration with operator execution (definitions_base.py wiring)
12. Backward compatibility: no overhead when monitor is not attached
"""

from __future__ import annotations

import math
import os
import sys

import networkx as nx
import numpy as np
import pytest

sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "..", "src"))

from tnfr.alias import get_attr, set_attr
from tnfr.constants.aliases import ALIAS_DNFR, ALIAS_EPI, ALIAS_THETA, ALIAS_VF
from tnfr.physics.integrity import (
    IntegrityReport,
    IntegritySummary,
    MonitorMode,
    OperatorContractAudit,
    OperatorContractResult,
    StructuralIntegrityMonitor,
    StructuralIntegrityViolation,
    audit_operator_contracts,
    enable_integrity_monitor,
)

# ═══════════════════════════════════════════════════════════════════════════
# Helpers
# ═══════════════════════════════════════════════════════════════════════════


def _make_graph(num_nodes: int = 5, connected: bool = True) -> nx.Graph:
    """Build a small TNFR graph with proper node attributes."""
    if connected:
        G = nx.cycle_graph(num_nodes)
    else:
        G = nx.Graph()
        G.add_nodes_from(range(num_nodes))
    for n in G.nodes():
        G.nodes[n]["EPI"] = 1.0 + 0.1 * n
        G.nodes[n]["nu_f"] = 1.0
        G.nodes[n]["ΔNFR"] = 0.05
        G.nodes[n]["theta"] = float(n) * 0.5
        G.nodes[n]["delta_nfr"] = 0.05
        G.nodes[n]["phase"] = float(n) * 0.5
    return G


# ═══════════════════════════════════════════════════════════════════════════
# Monitor creation and attachment
# ═══════════════════════════════════════════════════════════════════════════


class TestMonitorCreation:
    """Test StructuralIntegrityMonitor instantiation and attachment."""

    def test_default_mode_is_observe(self) -> None:
        monitor = StructuralIntegrityMonitor()
        assert monitor.mode == MonitorMode.OBSERVE

    def test_explicit_mode_off(self) -> None:
        monitor = StructuralIntegrityMonitor(mode=MonitorMode.OFF)
        assert monitor.mode == MonitorMode.OFF

    def test_explicit_mode_enforce(self) -> None:
        monitor = StructuralIntegrityMonitor(mode=MonitorMode.ENFORCE)
        assert monitor.mode == MonitorMode.ENFORCE

    def test_attach_stores_in_graph(self) -> None:
        G = _make_graph()
        monitor = StructuralIntegrityMonitor()
        monitor.attach(G)
        assert G.graph.get("integrity_monitor") is monitor

    def test_get_retrieves_from_graph(self) -> None:
        G = _make_graph()
        monitor = StructuralIntegrityMonitor()
        monitor.attach(G)
        retrieved = StructuralIntegrityMonitor.get(G)
        assert retrieved is monitor

    def test_get_returns_none_when_not_attached(self) -> None:
        G = _make_graph()
        assert StructuralIntegrityMonitor.get(G) is None

    def test_enable_convenience_function(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        assert isinstance(monitor, StructuralIntegrityMonitor)
        assert StructuralIntegrityMonitor.get(G) is monitor
        assert monitor.mode == MonitorMode.OBSERVE


# ═══════════════════════════════════════════════════════════════════════════
# Before/After Operator cycle
# ═══════════════════════════════════════════════════════════════════════════


class TestBeforeAfterCycle:
    """Test the before_operator/after_operator cycle."""

    def test_before_after_produces_report(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        assert isinstance(report, IntegrityReport)

    def test_report_has_conservation_quality(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        assert isinstance(report.conservation_quality, float)
        assert 0.0 <= report.conservation_quality <= 1.0

    def test_off_mode_returns_default_report(self) -> None:
        """OFF mode returns a default (healthy) report with no computation."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OFF)
        monitor.before_operator(G, 0)
        result = monitor.after_operator(G, 0, "Coherence")
        assert isinstance(result, IntegrityReport)
        assert result.is_healthy

    def test_observe_mode_does_not_raise(self) -> None:
        """OBSERVE mode should never raise even with violations."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Tamper with state to ensure postcondition violation
        G.nodes[0]["EPI"] = -999.0
        # Should not raise
        report = monitor.after_operator(G, 0, "Coherence")
        assert isinstance(report, IntegrityReport)

    def test_enforce_mode_raises_on_unhealthy(self) -> None:
        """ENFORCE mode should raise StructuralIntegrityViolation."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.ENFORCE)
        monitor.before_operator(G, 0)
        # Tamper: reduce coherence dramatically to trigger violation
        for n in G.nodes():
            G.nodes[n]["ΔNFR"] = 999.0
            G.nodes[n]["delta_nfr"] = 999.0
        try:
            monitor.after_operator(G, 0, "Coherence")
            # If it doesn't raise, the report might still be healthy
            # depending on how conservation quality is computed
        except StructuralIntegrityViolation:
            pass  # Expected


# ═══════════════════════════════════════════════════════════════════════════
# Postcondition evaluation
# ═══════════════════════════════════════════════════════════════════════════


class TestPostconditions:
    """Test that operator-specific postconditions are checked."""

    def test_coherence_postcondition_passes_on_stable(self) -> None:
        """IL postcondition: C(t) must not decrease."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # State unchanged → coherence unchanged → postcondition passes
        report = monitor.after_operator(G, 0, "Coherence")
        assert report.postcondition_ok is True

    def test_silence_postcondition_passes_on_unchanged_epi(self) -> None:
        """SHA postcondition: EPI must remain unchanged."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # State unchanged → EPI unchanged
        report = monitor.after_operator(G, 0, "Silence")
        assert report.postcondition_ok is True

    def test_silence_postcondition_fails_on_changed_epi(self) -> None:
        """SHA postcondition detects EPI change."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Tamper EPI
        G.nodes[0]["EPI"] = 999.0
        report = monitor.after_operator(G, 0, "Silence")
        assert report.postcondition_ok is False

    def test_emission_postcondition_passes_on_vf_increase(self) -> None:
        """AL postcondition: νf must increase."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Increase vf
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] + 1.0
        report = monitor.after_operator(G, 0, "Emission")
        assert report.postcondition_ok is True

    def test_emission_postcondition_fails_on_vf_decrease(self) -> None:
        """AL postcondition detects νf decrease."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Decrease vf
        G.nodes[0]["nu_f"] = 0.01
        report = monitor.after_operator(G, 0, "Emission")
        assert report.postcondition_ok is False

    def test_mutation_postcondition_passes_on_theta_change(self) -> None:
        """ZHIR postcondition: θ must change."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Change theta
        G.nodes[0]["theta"] = G.nodes[0]["theta"] + 1.0
        report = monitor.after_operator(G, 0, "Mutation")
        assert report.postcondition_ok is True

    def test_mutation_postcondition_fails_on_unchanged_theta(self) -> None:
        """ZHIR postcondition detects unchanged θ."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # θ stays the same
        report = monitor.after_operator(G, 0, "Mutation")
        assert report.postcondition_ok is False

    def test_expansion_postcondition_passes_on_vf_increase(self) -> None:
        """VAL postcondition: νf (capacity) must not decrease."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] + 0.5
        report = monitor.after_operator(G, 0, "Expansion")
        assert report.postcondition_ok is True

    def test_expansion_postcondition_fails_on_vf_decrease(self) -> None:
        """VAL postcondition detects νf decrease (capacity must not shrink)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = 0.01
        report = monitor.after_operator(G, 0, "Expansion")
        assert report.postcondition_ok is False
        assert "νf decreased" in report.postcondition_detail

    def test_contraction_postcondition_passes_on_vf_decrease(self) -> None:
        """NUL postcondition: νf (capacity) must not increase."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] * 0.85
        report = monitor.after_operator(G, 0, "Contraction")
        assert report.postcondition_ok is True

    def test_contraction_postcondition_fails_on_vf_increase(self) -> None:
        """NUL postcondition detects νf increase (capacity must not grow)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] + 0.5
        report = monitor.after_operator(G, 0, "Contraction")
        assert report.postcondition_ok is False
        assert "νf increased" in report.postcondition_detail

    def test_resonance_postcondition_preserves_identity(self) -> None:
        """RA postcondition: EPI sign (structural identity) preserved."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # νf up (amplification) and same-sign EPI change → identity preserved
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] * 1.05
        report = monitor.after_operator(G, 0, "Resonance")
        assert report.postcondition_ok is True

    def test_resonance_postcondition_fails_on_sign_flip(self) -> None:
        """RA postcondition detects EPI sign flip (identity not preserved)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Flip EPI sign → structural identity violated
        G.nodes[0]["EPI"] = -abs(G.nodes[0]["EPI"]) - 0.5
        report = monitor.after_operator(G, 0, "Resonance")
        assert report.postcondition_ok is False
        assert "sign flipped" in report.postcondition_detail

    def test_unknown_operator_skips_postcondition(self) -> None:
        """Operators without specific postconditions pass by default."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "SomeUnknownOperator")
        # Unknown operator → no postcondition → defaults to ok
        assert isinstance(report.postcondition_ok, bool)

    # ── Enriched postconditions ────────────────────────────────────────

    def test_emission_postcondition_fails_on_epi_decrease(self) -> None:
        """AL enriched: EPI must not decrease during Emission."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["EPI"] = 0.001  # Decrease EPI
        report = monitor.after_operator(G, 0, "Emission")
        assert report.postcondition_ok is False
        assert "EPI decreased" in report.postcondition_detail

    def test_coherence_postcondition_fails_on_dnfr_increase(self) -> None:
        """IL enriched: |ΔNFR| must not increase during Coherence."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Increase ΔNFR dramatically
        G.nodes[0]["ΔNFR"] = 999.0
        G.nodes[0]["delta_nfr"] = 999.0
        report = monitor.after_operator(G, 0, "Coherence")
        assert report.postcondition_ok is False

    def test_coherence_postcondition_reuses_dnfr_tracking(self) -> None:
        """IL enriched: ΔNFR check reuses IL_dnfr_reductions telemetry."""
        G = _make_graph()
        G.graph["IL_dnfr_reductions"] = [
            {"node": 0, "before": 0.5, "after": 0.35, "reduction": 0.15}
        ]
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        # ΔNFR "decreased" per telemetry (0.5 → 0.35) → passes
        assert report.postcondition_ok is True

    def test_silence_postcondition_fails_on_vf_increase(self) -> None:
        """SHA enriched: νf must not increase during Silence."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] + 5.0
        report = monitor.after_operator(G, 0, "Silence")
        assert report.postcondition_ok is False
        assert "νf increased" in report.postcondition_detail

    def test_silence_postcondition_passes_on_vf_decrease(self) -> None:
        """SHA enriched: νf decrease is expected (freeze)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] * 0.85
        report = monitor.after_operator(G, 0, "Silence")
        assert report.postcondition_ok is True

    def test_resonance_postcondition_fails_on_vf_decrease(self) -> None:
        """RA enriched: νf must not decrease during Resonance."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = 0.01  # Decrease νf
        report = monitor.after_operator(G, 0, "Resonance")
        assert report.postcondition_ok is False
        assert "νf decreased" in report.postcondition_detail

    def test_resonance_postcondition_passes_on_vf_increase(self) -> None:
        """RA enriched: νf increase expected (amplification)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] * 1.05
        report = monitor.after_operator(G, 0, "Resonance")
        assert report.postcondition_ok is True

    # ── New postconditions for UM, THOL, NAV, REMESH ──────────────────

    def test_coupling_postcondition_passes_on_dnfr_decrease(self) -> None:
        """UM: |ΔNFR| must not increase during Coupling."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # ΔNFR decreases (expected by coupling)
        G.nodes[0]["ΔNFR"] = G.nodes[0]["ΔNFR"] * 0.85
        G.nodes[0]["delta_nfr"] = G.nodes[0]["delta_nfr"] * 0.85
        report = monitor.after_operator(G, 0, "Coupling")
        assert report.postcondition_ok is True

    def test_coupling_postcondition_fails_on_dnfr_increase(self) -> None:
        """UM: |ΔNFR| increase during Coupling is a violation."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        G.nodes[0]["ΔNFR"] = 99.0
        G.nodes[0]["delta_nfr"] = 99.0
        report = monitor.after_operator(G, 0, "Coupling")
        assert report.postcondition_ok is False
        assert "|ΔNFR| increased" in report.postcondition_detail

    def test_self_organization_postcondition_passes_on_stable_coherence(self) -> None:
        """THOL: Small coherence change is tolerable."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # No state change → coherence unchanged → passes
        report = monitor.after_operator(G, 0, "Self_organization")
        assert report.postcondition_ok is True

    def test_self_organization_postcondition_fails_on_catastrophic_drop(self) -> None:
        """THOL: >10% coherence drop is a violation."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # Cause catastrophic coherence drop by spiking ΔNFR everywhere
        for n in G.nodes():
            G.nodes[n]["ΔNFR"] = 999.0
            G.nodes[n]["delta_nfr"] = 999.0
        report = monitor.after_operator(G, 0, "Self_organization")
        assert report.postcondition_ok is False
        assert "Coherence dropped" in report.postcondition_detail

    def test_transition_postcondition_passes_on_state_change(self) -> None:
        """NAV: At least one state variable must change."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # NAV modifies νf (regime transition)
        G.nodes[0]["nu_f"] = G.nodes[0]["nu_f"] * 1.2
        report = monitor.after_operator(G, 0, "Transition")
        assert report.postcondition_ok is True

    def test_transition_postcondition_fails_on_no_change(self) -> None:
        """NAV: No state change is a violation (trivial transition)."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        # No state changes at all
        report = monitor.after_operator(G, 0, "Transition")
        assert report.postcondition_ok is False
        assert "No state change" in report.postcondition_detail

    def test_recursivity_postcondition_always_passes(self) -> None:
        """REMESH: Advisory glyph always passes postcondition."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Recursivity")
        assert report.postcondition_ok is True

    # ── Full coverage: all 13 operators registered ────────────────────

    def test_all_13_operators_have_postconditions(self) -> None:
        """Verify POSTCONDITIONS dict covers all 13 canonical operators."""
        from tnfr.physics.integrity import POSTCONDITIONS

        expected = {
            "coherence",
            "dissonance",
            "silence",
            "reception",
            "resonance",
            "emission",
            "expansion",
            "contraction",
            "mutation",
            "coupling",
            "self_organization",
            "transition",
            "recursivity",
        }
        assert set(POSTCONDITIONS.keys()) == expected


# ═══════════════════════════════════════════════════════════════════════════
# IntegritySummary accumulation
# ═══════════════════════════════════════════════════════════════════════════


class TestIntegritySummary:
    """Test running statistics accumulation."""

    def test_summary_increments_total(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        # Run two cycles
        monitor.before_operator(G, 0)
        monitor.after_operator(G, 0, "Coherence")
        monitor.before_operator(G, 1)
        monitor.after_operator(G, 1, "Coherence")
        assert monitor.summary.total_operators == 2

    def test_summary_tracks_violations(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        # Break silence postcondition to cause violation
        G.nodes[0]["EPI"] = 999.0
        report = monitor.after_operator(G, 0, "Silence")
        if not report.is_healthy:
            assert monitor.summary.violations_count >= 1

    def test_summary_mean_conservation_quality(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        s = monitor.summary
        assert isinstance(s.mean_conservation_quality, float)


# ═══════════════════════════════════════════════════════════════════════════
# IntegrityReport health check
# ═══════════════════════════════════════════════════════════════════════════


class TestIntegrityReportHealth:
    """Test the is_healthy property of IntegrityReport."""

    def test_healthy_on_stable_graph(self) -> None:
        """Clean graph with no changes → healthy report."""
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        # On an unmodified graph, should be healthy
        assert isinstance(report.is_healthy, bool)

    def test_report_fields_populated(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        assert report.conservation_quality is not None
        assert report.energy_derivative is not None
        assert isinstance(report.is_lyapunov_stable, bool)
        assert isinstance(report.grammar_violations, list)
        assert isinstance(report.postcondition_ok, bool)


# ═══════════════════════════════════════════════════════════════════════════
# Corrective suggestions
# ═══════════════════════════════════════════════════════════════════════════


class TestCorrectiveSuggestions:
    """Test that corrective suggestions are generated for violations."""

    def test_no_suggestion_for_healthy_report(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        report = monitor.after_operator(G, 0, "Coherence")
        if report.is_healthy:
            assert (
                report.corrective_suggestion is None
                or report.corrective_suggestion == ""
            )

    def test_suggestion_for_postcondition_failure(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        # Break silence postcondition
        G.nodes[0]["EPI"] = 999.0
        report = monitor.after_operator(G, 0, "Silence")
        # Should have a suggestion or at least not crash
        assert isinstance(report.corrective_suggestion, (str, type(None)))


# ═══════════════════════════════════════════════════════════════════════════
# feedback_vector for self-optimization
# ═══════════════════════════════════════════════════════════════════════════


class TestFeedbackVector:
    """Test feedback_vector() produces correct structure for optimization engine."""

    def test_feedback_vector_keys(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        monitor.after_operator(G, 0, "Coherence")
        fv = monitor.feedback_vector()
        expected_keys = {
            "conservation_quality",
            "energy_derivative",
            "charge_drift",
            "violation_rate",
        }
        assert set(fv.keys()) == expected_keys

    def test_feedback_vector_types(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        monitor.after_operator(G, 0, "Coherence")
        fv = monitor.feedback_vector()
        for key, value in fv.items():
            assert isinstance(
                value, float
            ), f"feedback_vector['{key}'] should be float, got {type(value)}"

    def test_feedback_vector_conservation_quality_bounded(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        monitor.after_operator(G, 0, "Coherence")
        fv = monitor.feedback_vector()
        assert 0.0 <= fv["conservation_quality"] <= 1.0

    def test_feedback_vector_violation_rate_bounded(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        monitor.before_operator(G, 0)
        monitor.after_operator(G, 0, "Coherence")
        fv = monitor.feedback_vector()
        assert 0.0 <= fv["violation_rate"] <= 1.0

    def test_feedback_vector_empty_before_any_cycle(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        fv = monitor.feedback_vector()
        # No operations yet → defaults
        assert fv["violation_rate"] == 0.0


# ═══════════════════════════════════════════════════════════════════════════
# Backward compatibility
# ═══════════════════════════════════════════════════════════════════════════


class TestBackwardCompatibility:
    """Ensure zero overhead when monitor is not attached."""

    def test_no_monitor_no_overhead(self) -> None:
        """Graph without monitor should have no 'integrity_monitor' key."""
        G = _make_graph()
        assert "integrity_monitor" not in G.graph

    def test_operator_runs_without_monitor(self) -> None:
        """Operators should work normally without monitor."""
        try:
            from tnfr.operators.definitions import Coherence

            G = _make_graph()
            op = Coherence()
            op(G, 0)
        except ImportError:
            pytest.skip("Operator definitions not available")

    def test_operator_runs_with_monitor(self) -> None:
        """Operators should work normally with monitor in OBSERVE mode."""
        try:
            from tnfr.operators.definitions import Coherence

            G = _make_graph()
            enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
            op = Coherence()
            op(G, 0)
            monitor = StructuralIntegrityMonitor.get(G)
            # Monitor should have recorded at least one cycle
            assert monitor.summary.total_operators >= 1
        except ImportError:
            pytest.skip("Operator definitions not available")

    def test_transition_operator_runs_with_monitor(self) -> None:
        """NAV operator (custom __call__) must trigger integrity monitor hooks."""
        try:
            from tnfr.operators.definitions import Transition

            G = _make_graph()
            enable_integrity_monitor(G, mode=MonitorMode.OBSERVE)
            op = Transition()
            op(G, 0)
            monitor = StructuralIntegrityMonitor.get(G)
            assert monitor.summary.total_operators >= 1
            # Verify "transition" was the recorded operator name
            assert any(r.operator == "transition" for r in monitor._summary.reports)
        except ImportError:
            pytest.skip("Operator definitions not available")


# ═══════════════════════════════════════════════════════════════════════════
# StructuralIntegrityViolation exception
# ═══════════════════════════════════════════════════════════════════════════


class TestStructuralIntegrityViolation:
    """Test the violation exception."""

    def test_violation_inherits_from_exception(self) -> None:
        exc = StructuralIntegrityViolation(
            operator="Coherence",
            violation_type="postcondition_failed",
            details={"reason": "C(t) decreased"},
        )
        assert isinstance(exc, Exception)

    def test_violation_attributes(self) -> None:
        exc = StructuralIntegrityViolation(
            operator="Silence",
            violation_type="epi_changed",
            details={"reason": "EPI shifted by 0.5", "delta": 0.5},
        )
        assert exc.operator == "Silence"
        assert exc.violation_type == "epi_changed"
        assert isinstance(exc.details, dict)
        assert "0.5" in exc.details["reason"]

    def test_violation_str_representation(self) -> None:
        exc = StructuralIntegrityViolation(
            operator="Emission",
            violation_type="vf_unchanged",
            details={"reason": "νf did not increase"},
        )
        text = str(exc)
        assert "Emission" in text


# ═══════════════════════════════════════════════════════════════════════════
# Multi-operator sequence tracking
# ═══════════════════════════════════════════════════════════════════════════


class TestMultiOperatorSequence:
    """Test monitoring across sequences of operators."""

    def test_multiple_operators_accumulate(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        ops = ["Coherence", "Coherence", "Silence", "Coherence"]
        for i, op_name in enumerate(ops):
            node = i % len(G.nodes())
            monitor.before_operator(G, node)
            monitor.after_operator(G, node, op_name)
        assert monitor.summary.total_operators == len(ops)

    def test_feedback_vector_reflects_history(self) -> None:
        G = _make_graph()
        monitor = enable_integrity_monitor(G)
        for i in range(5):
            monitor.before_operator(G, 0)
            monitor.after_operator(G, 0, "Coherence")
        fv = monitor.feedback_vector()
        # After 5 clean operations, conservation quality should be decent
        assert fv["conservation_quality"] >= 0.0
        assert fv["violation_rate"] >= 0.0


class TestOperatorContractAudit:
    """Proactive measured fidelity of the 13 operators to their contracts."""

    def test_audit_returns_thirteen_results(self) -> None:
        audit = audit_operator_contracts()
        assert isinstance(audit, OperatorContractAudit)
        assert audit.n_operators == 13
        assert all(isinstance(r, OperatorContractResult) for r in audit.results)

    def test_all_thirteen_contracts_satisfied(self) -> None:
        # every canonical operator satisfies its postcondition contract
        # when MEASURED in its correct canonical context
        audit = audit_operator_contracts()
        assert audit.all_satisfied, audit.summary()
        assert audit.n_satisfied == 13
        assert audit.violations == ()

    def test_all_thirteen_glyphs_present(self) -> None:
        audit = audit_operator_contracts()
        glyphs = {r.glyph for r in audit.results}
        assert glyphs == {
            "AL",
            "EN",
            "IL",
            "OZ",
            "UM",
            "RA",
            "SHA",
            "VAL",
            "NUL",
            "THOL",
            "ZHIR",
            "NAV",
            "REMESH",
        }

    def test_stabiliser_il_reduces_dnfr(self) -> None:
        # IL is measured at network level: it must not increase |ΔNFR|
        audit = audit_operator_contracts()
        il = next(r for r in audit.results if r.glyph == "IL")
        assert il.satisfied
        assert il.context == "network"

    def test_coupling_um_reduces_dnfr(self) -> None:
        audit = audit_operator_contracts()
        um = next(r for r in audit.results if r.glyph == "UM")
        assert um.satisfied
        assert um.context == "network"

    def test_resonance_ra_preserves_identity(self) -> None:
        audit = audit_operator_contracts()
        ra = next(r for r in audit.results if r.glyph == "RA")
        assert ra.satisfied
        assert ra.context == "identity"

    def test_mutation_zhir_transforms_phase(self) -> None:
        audit = audit_operator_contracts()
        zhir = next(r for r in audit.results if r.glyph == "ZHIR")
        assert zhir.satisfied
        assert zhir.context == "phase"

    def test_audit_is_reproducible(self) -> None:
        a1 = audit_operator_contracts(seed=7)
        a2 = audit_operator_contracts(seed=7)
        assert [r.satisfied for r in a1.results] == [r.satisfied for r in a2.results]

    def test_summary_contains_verdict(self) -> None:
        audit = audit_operator_contracts()
        text = audit.summary()
        assert "ALL SATISFIED" in text
        assert "13/13" in text


class TestSDKOperatorAudit:
    """The SDK exposes the measured operator audit and a working check."""

    def test_sdk_audit_operators(self) -> None:
        from tnfr.sdk import TNFR

        net = TNFR.create(16).random(0.3).evolve(2)
        result = net.audit_operators()
        assert result["all_satisfied"] is True
        assert result["n_satisfied"] == 13
        assert result["n_operators"] == 13
        assert len(result["operators"]) == 13

    def test_sdk_integrity_check_no_longer_empty(self) -> None:
        # regression: integrity_check used to read a non-existent .passed
        # attribute and silently skip every node (nodes_checked=0)
        from tnfr.sdk import TNFR

        net = TNFR.create(16).random(0.3).evolve(2)
        result = net.integrity_check("IL")
        assert result["nodes_checked"] > 0